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The map label for this gene is nifU [H]

Identifier: 152977255

GI number: 152977255

Start: 3636526

End: 3636957

Strand: Reverse

Name: nifU [H]

Synonym: Bcer98_3576

Alternate gene names: 152977255

Gene position: 3636957-3636526 (Counterclockwise)

Preceding gene: 152977256

Following gene: 152977254

Centisome position: 88.99

GC content: 36.57

Gene sequence:

>432_bases
ATGTCTTTTAATAATTTAGATACGTTATATCGTCAAGTTATTATGGATCATTATAAGAATCCACGTAACCATGGCGTGTT
AGAAGATAGTGTTACAGTTAACTTAAACAACCCAACTTGCGGCGATTGTATTCAGCTTACGATGAAAGTAGAAGAGGGAA
TCGTAAAAGAAGCGAAGTTTGAGGGAGAAGGATGTTCCATTTCAATGTCTTCAGCTTCGATGATGACGCAAGCGGTAAAA
GGAAAGAAAATTGAAGATGCACTTAAGCTTTCGAAAATTTTCTCTGACATGATGCTAGGAAAAGAGTATGATGACAGCGT
AGATTTAGGAGATATTGAAGCATTACAAGGTGTATGCAAGTTTCCAGCGCGTATTAAATGTGCAACATTAGCTTGGAAAG
CGTTAGAAAAAGGCTTAAACGAAGAAAAGTAA

Upstream 100 bases:

>100_bases
GCTTCTTCTACAGCACGTGCAAGCTTCTATTTATATAATACAAAAGAAGAAATTGATACATTTGTTGAAGCGCTAACGAA
AACAAAGGAGTATTTCACAA

Downstream 100 bases:

>100_bases
TGTGAGAAGTTCCTAAAGACGGAGTTATCTAAGGAGGGACATACCAACATGGCGAAACAAATGCCAGATATCGGCGATTA
CAAATATGGTTTCAAGGATA

Product: NifU family SUF system FeS assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MSFNNLDTLYRQVIMDHYKNPRNHGVLEDSVTVNLNNPTCGDCIQLTMKVEEGIVKEAKFEGEGCSISMSSASMMTQAVK
GKKIEDALKLSKIFSDMMLGKEYDDSVDLGDIEALQGVCKFPARIKCATLAWKALEKGLNEEK

Sequences:

>Translated_143_residues
MSFNNLDTLYRQVIMDHYKNPRNHGVLEDSVTVNLNNPTCGDCIQLTMKVEEGIVKEAKFEGEGCSISMSSASMMTQAVK
GKKIEDALKLSKIFSDMMLGKEYDDSVDLGDIEALQGVCKFPARIKCATLAWKALEKGLNEEK
>Mature_142_residues
SFNNLDTLYRQVIMDHYKNPRNHGVLEDSVTVNLNNPTCGDCIQLTMKVEEGIVKEAKFEGEGCSISMSSASMMTQAVKG
KKIEDALKLSKIFSDMMLGKEYDDSVDLGDIEALQGVCKFPARIKCATLAWKALEKGLNEEK

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Homo sapiens, GI56699456, Length=141, Percent_Identity=32.6241134751773, Blast_Score=71, Evalue=2e-13,
Organism=Homo sapiens, GI24307953, Length=136, Percent_Identity=32.3529411764706, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1788878, Length=141, Percent_Identity=29.7872340425532, Blast_Score=69, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17543474, Length=137, Percent_Identity=32.1167883211679, Blast_Score=67, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6324800, Length=141, Percent_Identity=28.3687943262411, Blast_Score=68, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6325122, Length=141, Percent_Identity=26.9503546099291, Blast_Score=64, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21355597, Length=88, Percent_Identity=43.1818181818182, Blast_Score=70, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002871
- InterPro:   IPR011341 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 15886; Mature: 15755

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
9.1 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
8.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFNNLDTLYRQVIMDHYKNPRNHGVLEDSVTVNLNNPTCGDCIQLTMKVEEGIVKEAKF
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCC
EGEGCSISMSSASMMTQAVKGKKIEDALKLSKIFSDMMLGKEYDDSVDLGDIEALQGVCK
CCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHC
FPARIKCATLAWKALEKGLNEEK
CCCHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SFNNLDTLYRQVIMDHYKNPRNHGVLEDSVTVNLNNPTCGDCIQLTMKVEEGIVKEAKF
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCC
EGEGCSISMSSASMMTQAVKGKKIEDALKLSKIFSDMMLGKEYDDSVDLGDIEALQGVCK
CCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHC
FPARIKCATLAWKALEKGLNEEK
CCCHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]