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The map label for this gene is cph2 [H]

Identifier: 152969456

GI number: 152969456

Start: 1004075

End: 1005127

Strand: Direct

Name: cph2 [H]

Synonym: KPN_00899

Alternate gene names: 152969456

Gene position: 1004075-1005127 (Clockwise)

Preceding gene: 152969449

Following gene: 152969457

Centisome position: 18.89

GC content: 53.47

Gene sequence:

>1053_bases
ATGAGTATGCCCTGGCTCGCCTTTGTCAATATCGCTTTTGCGTTAATGATTTTCTTCCGCAATTTTATCTTTACCTATTT
TGATAAGAGGCTACTGACGCATCGGGCGGTTATTCCTTATATCGAAGCGGCGTTGATTGCGGTTATTATCATTTCGGCCA
TTTTAGTGATTATTGCCGTCACGCCGCGACTGGCGCAGGGACGATATACGTTGAATATCATCACCGGGCTGCTGCTGGTG
CTCAGTCTGTGCTGGTCCCTGAGTAATTATTGTTTTATTTTTTTCTGGACCTTGCCCTTTGCCTGGCCGCTGCTGGTGAT
ATTAATGACTACCGGCCTCACCGCGCTGTATCACCATTGGCCCGGCATTACCGCTTTTATGCTGCCGCTATGGGTGACCG
CCTTGCTGGCGGGAATACAGCTCCACTATCACACCGAGATCCGCTTTTTGATCCTCTGGGCCATTTTTATCGCGATTTTG
CTGTATGGCCGACGTATTTTGCAGCGCTGGTATGACGAGGCCTGGGATACCCACCAGGAGAATATGCAGCTTATTCAGCG
GCTGGAAAGTATCGCCAACCAGGATGCCTTAACCGGAACCGCTAACCGTCGGGCGCTCAATGCTTACCTGGCGGCGATCT
GGCAGCAAAAAACGCCGCTGGCGCTGATGATGATCGATGTCGATTATTTTAAGCGCTATAACGATCGCTATGGCCATCAG
GCTGGTGATGAATGCTTATCTTCTGTCGCGCAGGTGCTTAAAATGGCGGTCCGGGCTGAGGGCGATCTGGTGGCTCGCTA
CGGCGGCGAAGAGTTTGTCGTCGTGTTGCCCGGGGTGTCCTTAGCGCATGCCACCGCTATTGCCGAGCGCATTCAGCAGA
AGATCCGCGAGGCAGGCCTACCGCACGCCGCTTCGGCGGTGGCGTCGGAGGTCACCGTGAGTATCGGGATCGTCGCCTCC
GATGGCACGGTCCCGATAGAGACGCTGATCGCCCGGGCGGACAGTGCGCTGTATCAGGCGAAAAATAATGGACGTAATCA
ATGGTCTTATTAA

Upstream 100 bases:

>100_bases
CCAGGGAGTTAAGATGTTAACAAATAAGCGAGAGCGCGCCCGGCAGCAGCGAGCCGCGTTGTGGGCCACCAGAGATAATG
TCCAGCGCCATGCGCTGTCC

Downstream 100 bases:

>100_bases
CCCGGAGACGCTGCCGGGCAAGGGAGAAGGGATGAAACGGATGATGCGGATCGTGCTGCTGGCGCTGCTGCTAACCGGCT
GCGCTGGGGAAAAGGGCATT

Product: hypothetical protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 350; Mature: 349

Protein sequence:

>350_residues
MSMPWLAFVNIAFALMIFFRNFIFTYFDKRLLTHRAVIPYIEAALIAVIIISAILVIIAVTPRLAQGRYTLNIITGLLLV
LSLCWSLSNYCFIFFWTLPFAWPLLVILMTTGLTALYHHWPGITAFMLPLWVTALLAGIQLHYHTEIRFLILWAIFIAIL
LYGRRILQRWYDEAWDTHQENMQLIQRLESIANQDALTGTANRRALNAYLAAIWQQKTPLALMMIDVDYFKRYNDRYGHQ
AGDECLSSVAQVLKMAVRAEGDLVARYGGEEFVVVLPGVSLAHATAIAERIQQKIREAGLPHAASAVASEVTVSIGIVAS
DGTVPIETLIARADSALYQAKNNGRNQWSY

Sequences:

>Translated_350_residues
MSMPWLAFVNIAFALMIFFRNFIFTYFDKRLLTHRAVIPYIEAALIAVIIISAILVIIAVTPRLAQGRYTLNIITGLLLV
LSLCWSLSNYCFIFFWTLPFAWPLLVILMTTGLTALYHHWPGITAFMLPLWVTALLAGIQLHYHTEIRFLILWAIFIAIL
LYGRRILQRWYDEAWDTHQENMQLIQRLESIANQDALTGTANRRALNAYLAAIWQQKTPLALMMIDVDYFKRYNDRYGHQ
AGDECLSSVAQVLKMAVRAEGDLVARYGGEEFVVVLPGVSLAHATAIAERIQQKIREAGLPHAASAVASEVTVSIGIVAS
DGTVPIETLIARADSALYQAKNNGRNQWSY
>Mature_349_residues
SMPWLAFVNIAFALMIFFRNFIFTYFDKRLLTHRAVIPYIEAALIAVIIISAILVIIAVTPRLAQGRYTLNIITGLLLVL
SLCWSLSNYCFIFFWTLPFAWPLLVILMTTGLTALYHHWPGITAFMLPLWVTALLAGIQLHYHTEIRFLILWAIFIAILL
YGRRILQRWYDEAWDTHQENMQLIQRLESIANQDALTGTANRRALNAYLAAIWQQKTPLALMMIDVDYFKRYNDRYGHQA
GDECLSSVAQVLKMAVRAEGDLVARYGGEEFVVVLPGVSLAHATAIAERIQQKIREAGLPHAASAVASEVTVSIGIVASD
GTVPIETLIARADSALYQAKNNGRNQWSY

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=175, Percent_Identity=41.7142857142857, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1787262, Length=162, Percent_Identity=36.4197530864198, Blast_Score=115, Evalue=6e-27,
Organism=Escherichia coli, GI87082007, Length=208, Percent_Identity=37.9807692307692, Blast_Score=114, Evalue=9e-27,
Organism=Escherichia coli, GI145693134, Length=161, Percent_Identity=39.7515527950311, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1787816, Length=158, Percent_Identity=34.1772151898734, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787802, Length=173, Percent_Identity=34.6820809248555, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1788085, Length=168, Percent_Identity=30.952380952381, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1786584, Length=242, Percent_Identity=27.6859504132231, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787056, Length=169, Percent_Identity=33.1360946745562, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787541, Length=172, Percent_Identity=32.5581395348837, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788381, Length=178, Percent_Identity=32.5842696629214, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87081977, Length=156, Percent_Identity=34.6153846153846, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87081974, Length=153, Percent_Identity=30.0653594771242, Blast_Score=72, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 39521; Mature: 39390

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMPWLAFVNIAFALMIFFRNFIFTYFDKRLLTHRAVIPYIEAALIAVIIISAILVIIAV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
TPRLAQGRYTLNIITGLLLVLSLCWSLSNYCFIFFWTLPFAWPLLVILMTTGLTALYHHW
CCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PGITAFMLPLWVTALLAGIQLHYHTEIRFLILWAIFIAILLYGRRILQRWYDEAWDTHQE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
NMQLIQRLESIANQDALTGTANRRALNAYLAAIWQQKTPLALMMIDVDYFKRYNDRYGHQ
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHCCCC
AGDECLSSVAQVLKMAVRAEGDLVARYGGEEFVVVLPGVSLAHATAIAERIQQKIREAGL
HHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCC
PHAASAVASEVTVSIGIVASDGTVPIETLIARADSALYQAKNNGRNQWSY
CHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SMPWLAFVNIAFALMIFFRNFIFTYFDKRLLTHRAVIPYIEAALIAVIIISAILVIIAV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
TPRLAQGRYTLNIITGLLLVLSLCWSLSNYCFIFFWTLPFAWPLLVILMTTGLTALYHHW
CCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PGITAFMLPLWVTALLAGIQLHYHTEIRFLILWAIFIAILLYGRRILQRWYDEAWDTHQE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
NMQLIQRLESIANQDALTGTANRRALNAYLAAIWQQKTPLALMMIDVDYFKRYNDRYGHQ
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHCCCC
AGDECLSSVAQVLKMAVRAEGDLVARYGGEEFVVVLPGVSLAHATAIAERIQQKIREAGL
HHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCC
PHAASAVASEVTVSIGIVASDGTVPIETLIARADSALYQAKNNGRNQWSY
CHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]