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The map label for this gene is ybjR [H]

Identifier: 152969457

GI number: 152969457

Start: 1005102

End: 1005989

Strand: Direct

Name: ybjR [H]

Synonym: KPN_00900

Alternate gene names: 152969457

Gene position: 1005102-1005989 (Clockwise)

Preceding gene: 152969456

Following gene: 152969462

Centisome position: 18.91

GC content: 59.23

Gene sequence:

>888_bases
ATGGACGTAATCAATGGTCTTATTAACCCGGAGACGCTGCCGGGCAAGGGAGAAGGGATGAAACGGATGATGCGGATCGT
GCTGCTGGCGCTGCTGCTAACCGGCTGCGCTGGGGAAAAGGGCATTATCGATCGCGACGGATACCAGCTGGACACCCGTC
ATCCGGCGCAGGCTGCCTATCCGCGAATAAAGGTGTTAGTGATCCACTATACGGCTGACAATTTTGATGTCTCGCTGGCC
ACGTTGACCGATAAAGAGGTCAGCTCCCACTATTTAATTCCTGAACAGCCCCCGCGTTATCAGCATAAACCGCGGATCTG
GCAGCTGGTGCCGGAAGAGGATTTAGCCTGGCACGCCGGGGTAAGCTACTGGCGCGGTAGTACGCGCATTAACGATACCT
CCATTGGCATTGAGCTGGAGAACCGCGGCTGGCAGAAGACGGCGGGCGTCAAAAGTTTTACCCCCTTTCATCCGGAACAG
ATTGCGGCTCTGATCCCGCTGGCGCGCGATATCATCGCCCGCTACCACATCGCGCCGCAGAATGTGGTCGCCCATGCGGA
TATCGCCCCGCAGCGCAAAGACGATCCGGGGCCGTTATTCCCCTGGCAACAGCTGGCGCAGCAGGGGATCGGCGCCTGGC
CTGACGAGCAGCGGGTGGCCTTTTATCTCAACGGGCGGCCGGCCAGCGAGCCAGTGGACCCCGAAATCGTACTGGATTTG
CTCTCGCGCTATGGCTATCAGGTGACGCCGGAGATGACCCCCGCGCAGAAGAAGCGGGTGATTATCGCCTTCCAGATGCA
CTTCCGTCCGCAGCGCTGGGATGGGGTAGCGGATGCGCAAACCGAAGCGATAGCCGAGGCGCTGTTAGAAAAATATGGCC
AGGGTTAG

Upstream 100 bases:

>100_bases
GAGGTCACCGTGAGTATCGGGATCGTCGCCTCCGATGGCACGGTCCCGATAGAGACGCTGATCGCCCGGGCGGACAGTGC
GCTGTATCAGGCGAAAAATA

Downstream 100 bases:

>100_bases
CGGTGTAGTTTACCGTGGTCGCGAAGCCAGGCGGCGGTGCGCACGATGCCGTCGTCAAGCGTCACCACCGGCTGATAGCC
CAGCTCGTCCTGCGCGCGGG

Product: N-acetylmuramoyl-L-alanine amidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MDVINGLINPETLPGKGEGMKRMMRIVLLALLLTGCAGEKGIIDRDGYQLDTRHPAQAAYPRIKVLVIHYTADNFDVSLA
TLTDKEVSSHYLIPEQPPRYQHKPRIWQLVPEEDLAWHAGVSYWRGSTRINDTSIGIELENRGWQKTAGVKSFTPFHPEQ
IAALIPLARDIIARYHIAPQNVVAHADIAPQRKDDPGPLFPWQQLAQQGIGAWPDEQRVAFYLNGRPASEPVDPEIVLDL
LSRYGYQVTPEMTPAQKKRVIIAFQMHFRPQRWDGVADAQTEAIAEALLEKYGQG

Sequences:

>Translated_295_residues
MDVINGLINPETLPGKGEGMKRMMRIVLLALLLTGCAGEKGIIDRDGYQLDTRHPAQAAYPRIKVLVIHYTADNFDVSLA
TLTDKEVSSHYLIPEQPPRYQHKPRIWQLVPEEDLAWHAGVSYWRGSTRINDTSIGIELENRGWQKTAGVKSFTPFHPEQ
IAALIPLARDIIARYHIAPQNVVAHADIAPQRKDDPGPLFPWQQLAQQGIGAWPDEQRVAFYLNGRPASEPVDPEIVLDL
LSRYGYQVTPEMTPAQKKRVIIAFQMHFRPQRWDGVADAQTEAIAEALLEKYGQG
>Mature_295_residues
MDVINGLINPETLPGKGEGMKRMMRIVLLALLLTGCAGEKGIIDRDGYQLDTRHPAQAAYPRIKVLVIHYTADNFDVSLA
TLTDKEVSSHYLIPEQPPRYQHKPRIWQLVPEEDLAWHAGVSYWRGSTRINDTSIGIELENRGWQKTAGVKSFTPFHPEQ
IAALIPLARDIIARYHIAPQNVVAHADIAPQRKDDPGPLFPWQQLAQQGIGAWPDEQRVAFYLNGRPASEPVDPEIVLDL
LSRYGYQVTPEMTPAQKKRVIIAFQMHFRPQRWDGVADAQTEAIAEALLEKYGQG

Specific function: Unknown

COG id: COG3023

COG function: function code V; Negative regulator of beta-lactamase expression

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-acetylmuramoyl-L-alanine amidase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787092, Length=275, Percent_Identity=76.3636363636364, Blast_Score=431, Evalue=1e-122,
Organism=Escherichia coli, GI1786300, Length=127, Percent_Identity=38.5826771653543, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002502
- InterPro:   IPR002477 [H]

Pfam domain/function: PF01510 Amidase_2 [H]

EC number: =3.5.1.28 [H]

Molecular weight: Translated: 33210; Mature: 33210

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVINGLINPETLPGKGEGMKRMMRIVLLALLLTGCAGEKGIIDRDGYQLDTRHPAQAAY
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCHHHCC
PRIKVLVIHYTADNFDVSLATLTDKEVSSHYLIPEQPPRYQHKPRIWQLVPEEDLAWHAG
CEEEEEEEEEECCCCEEEEEEECCHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHC
VSYWRGSTRINDTSIGIELENRGWQKTAGVKSFTPFHPEQIAALIPLARDIIARYHIAPQ
HHHHCCCCEECCCEEEEEECCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
NVVAHADIAPQRKDDPGPLFPWQQLAQQGIGAWPDEQRVAFYLNGRPASEPVDPEIVLDL
CEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHH
LSRYGYQVTPEMTPAQKKRVIIAFQMHFRPQRWDGVADAQTEAIAEALLEKYGQG
HHHCCCEECCCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDVINGLINPETLPGKGEGMKRMMRIVLLALLLTGCAGEKGIIDRDGYQLDTRHPAQAAY
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCHHHCC
PRIKVLVIHYTADNFDVSLATLTDKEVSSHYLIPEQPPRYQHKPRIWQLVPEEDLAWHAG
CEEEEEEEEEECCCCEEEEEEECCHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHC
VSYWRGSTRINDTSIGIELENRGWQKTAGVKSFTPFHPEQIAALIPLARDIIARYHIAPQ
HHHHCCCCEECCCEEEEEECCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
NVVAHADIAPQRKDDPGPLFPWQQLAQQGIGAWPDEQRVAFYLNGRPASEPVDPEIVLDL
CEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHH
LSRYGYQVTPEMTPAQKKRVIIAFQMHFRPQRWDGVADAQTEAIAEALLEKYGQG
HHHCCCEECCCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]