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The map label for this gene is pecM [H]

Identifier: 150398687

GI number: 150398687

Start: 3707421

End: 3708296

Strand: Direct

Name: pecM [H]

Synonym: Smed_3501

Alternate gene names: 150398687

Gene position: 3707421-3708296 (Clockwise)

Preceding gene: 150398685

Following gene: 150398688

Centisome position: 98.03

GC content: 66.1

Gene sequence:

>876_bases
ATGAGCGGGCGCCGCACCGATATTATGCTCACGGCCGTAGCTCCGGCGATTTGGGGCAGCACCTATCTCGTAACGACGGA
ATTCCTGCCCGCGGGCTATCCGCTGCACGTCGCGATGCTGAGGGCGCTTCCGGCGGGCCTGCTGCTGTTGATCATCGTCC
GGCGCATGCCGAAGGGAGTCTGGTGGCTGCGCGCCTTTCTGCTCGGCGCCCTCAACTTCTCTTTCTTCTGGGCGATGCTT
TTCGTGTCCGCCTACCGCCTGCCGGGCGGCGTAGCGGCGACCGTCGGTGCCGTTCAGCCGTTGATCGTTGTGGTCCTGTC
GCGGGTCATCCTCGGCTCACCGATAAGGCGTCTGAGCGTCATCGCAGGCGCCGCGGGTCTGGCCGGCGTTGCGCTTCTGG
TGCTGACGCCGAAAGCCGCGCTCGACCCGATCGGCGTTGCGGCCGGCCTCGCAGGCACCGTATCGATGGCTTTCGGAACG
GTGCTGAGCCGTCACTGGACGCCGCCGGTCTCGCCGCTCACCTTCACCGCCTGGCAATTGGCGGCGGGAGGCCTGCTTCT
GGTGCCCGTGGCCCTCTTCTTCGAGCCCGCCTTGCCGCCGCTCACCGCCGAAAACCTTCTCGGCTTCGCCTATCTCGGCC
TGATCGGCGCAGCCTTCACCTATCTGCTCTGGTTCCGCGGACTGTCGCGGCTCGAGCCCTCTCAGGTCTCGCCGCTCGGC
TTCTTAAGCCCGGTCGTGGCGATCCTGCTCGGCTGGGGCATACTTGATCAACAACTCGTCACCGTGCAGGTGGTTGGCAT
CGCAATCGTCTTCGCAAGCGTGTGGATGAGCCAGCAGGCGCAGATGGGGCATCGGGCGTTGCCGATGCGTGCGTAG

Upstream 100 bases:

>100_bases
TGTTTTCTTCCTTCGCCGCTCTAACGTCCGGGTATCTTGACGTCAAGATAAATCAGTGTAGCATCGCGTATCTTGATGTC
GAGATTGTTGAGGTAAAGAT

Downstream 100 bases:

>100_bases
CGGATACGGCACCGAGTTTGCCGGCTGTCCCTTCTCCCCGCAGGTCTCGGCAGCGGAGTGAGGGTGCCGCCATTCCGTAA
AGCGATCACGCTCGCCCTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 290

Protein sequence:

>291_residues
MSGRRTDIMLTAVAPAIWGSTYLVTTEFLPAGYPLHVAMLRALPAGLLLLIIVRRMPKGVWWLRAFLLGALNFSFFWAML
FVSAYRLPGGVAATVGAVQPLIVVVLSRVILGSPIRRLSVIAGAAGLAGVALLVLTPKAALDPIGVAAGLAGTVSMAFGT
VLSRHWTPPVSPLTFTAWQLAAGGLLLVPVALFFEPALPPLTAENLLGFAYLGLIGAAFTYLLWFRGLSRLEPSQVSPLG
FLSPVVAILLGWGILDQQLVTVQVVGIAIVFASVWMSQQAQMGHRALPMRA

Sequences:

>Translated_291_residues
MSGRRTDIMLTAVAPAIWGSTYLVTTEFLPAGYPLHVAMLRALPAGLLLLIIVRRMPKGVWWLRAFLLGALNFSFFWAML
FVSAYRLPGGVAATVGAVQPLIVVVLSRVILGSPIRRLSVIAGAAGLAGVALLVLTPKAALDPIGVAAGLAGTVSMAFGT
VLSRHWTPPVSPLTFTAWQLAAGGLLLVPVALFFEPALPPLTAENLLGFAYLGLIGAAFTYLLWFRGLSRLEPSQVSPLG
FLSPVVAILLGWGILDQQLVTVQVVGIAIVFASVWMSQQAQMGHRALPMRA
>Mature_290_residues
SGRRTDIMLTAVAPAIWGSTYLVTTEFLPAGYPLHVAMLRALPAGLLLLIIVRRMPKGVWWLRAFLLGALNFSFFWAMLF
VSAYRLPGGVAATVGAVQPLIVVVLSRVILGSPIRRLSVIAGAAGLAGVALLVLTPKAALDPIGVAAGLAGTVSMAFGTV
LSRHWTPPVSPLTFTAWQLAAGGLLLVPVALFFEPALPPLTAENLLGFAYLGLIGAAFTYLLWFRGLSRLEPSQVSPLGF
LSPVVAILLGWGILDQQLVTVQVVGIAIVFASVWMSQQAQMGHRALPMRA

Specific function: Involved in pectinase, cellulase, and blue pigment regulation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

Organism=Escherichia coli, GI1788269, Length=192, Percent_Identity=31.7708333333333, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004779
- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 30858; Mature: 30726

Theoretical pI: Translated: 11.76; Mature: 11.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGRRTDIMLTAVAPAIWGSTYLVTTEFLPAGYPLHVAMLRALPAGLLLLIIVRRMPKGV
CCCCCHHEEHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHH
WWLRAFLLGALNFSFFWAMLFVSAYRLPGGVAATVGAVQPLIVVVLSRVILGSPIRRLSV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
IAGAAGLAGVALLVLTPKAALDPIGVAAGLAGTVSMAFGTVLSRHWTPPVSPLTFTAWQL
HHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
AAGGLLLVPVALFFEPALPPLTAENLLGFAYLGLIGAAFTYLLWFRGLSRLEPSQVSPLG
HHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
FLSPVVAILLGWGILDQQLVTVQVVGIAIVFASVWMSQQAQMGHRALPMRA
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SGRRTDIMLTAVAPAIWGSTYLVTTEFLPAGYPLHVAMLRALPAGLLLLIIVRRMPKGV
CCCCHHEEHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHH
WWLRAFLLGALNFSFFWAMLFVSAYRLPGGVAATVGAVQPLIVVVLSRVILGSPIRRLSV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
IAGAAGLAGVALLVLTPKAALDPIGVAAGLAGTVSMAFGTVLSRHWTPPVSPLTFTAWQL
HHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
AAGGLLLVPVALFFEPALPPLTAENLLGFAYLGLIGAAFTYLLWFRGLSRLEPSQVSPLG
HHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
FLSPVVAILLGWGILDQQLVTVQVVGIAIVFASVWMSQQAQMGHRALPMRA
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8022282 [H]