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The map label for this gene is 150398688

Identifier: 150398688

GI number: 150398688

Start: 3708455

End: 3709117

Strand: Direct

Name: 150398688

Synonym: Smed_3502

Alternate gene names: NA

Gene position: 3708455-3709117 (Clockwise)

Preceding gene: 150398687

Following gene: 150398689

Centisome position: 98.06

GC content: 64.1

Gene sequence:

>663_bases
ATGACCGGACACCTGACGTCGGCGCATTATTCCGACCTCCTCCGTTTCGCCAGGCGCCAGACCCGGCGCGCGGCCGACGC
GGAGGATCTGCTGCAGGAGGCGCTGATCGTGGCGCTCAGGGCGCGGCGGTTACCGGTCGGCGAAAATCGAGCCTGGTTTC
GCGGCGTCATCCGTAATCTGGCCACGATGCAGGCGCGAACGGCAGCACGCCGTATTCGGCGCGAGCAGCAGATGCCCTTG
CCGGATTCAGAGGATGATGTGGCTGTGAGCGATGTGCTGGCCTTTGCAGCCACGCTTACGCCCCGCCTCCGGATCGTGAT
GCTGCTCGCAATAGCAGGCCACAACCGGCCTGAGATTCGCCATCTCCTCAGAATCTCCGATGAGGCGCTGCGCCAGCGCA
TCCTGATGCTTCGGCGCGCCTGGCGTGACGCTGACCGCGCCGACGCGAATCCGGGAATGATCGGCCTGAACTGCCTGCTG
GAGAACGGCCGGATCCGTCAGGCGCTGCTGCCGATGACGCGCGGCAACCGCGCCGCGTTTGCCAGCCACGATCCGGACGG
CCATCTCTTCGCGATTAATTTTTCTCCCCGCACTCCTCACGAAACGGCAGCCGGCGGCAACAAGCCTGTGTACAAACAGA
AGGGAGCAATCAATGCTATCTAA

Upstream 100 bases:

>100_bases
TGAGGGTGCCGCCATTCCGTAAAGCGATCACGCTCGCCCTTGCGCTTGACGGGCAAGCGCTTCACATTGCCGAAAAATCA
CGCGAGAAGCACTGCCCTTC

Downstream 100 bases:

>100_bases
AACACGCATCGGAAACATCTGCTACTACGTCTCGGACATCGCCCGCACCGAGGCATTCTATCGCGATGTGCTGGGTCTCG
ACGTTCAGCGCATGGGCGAT

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MTGHLTSAHYSDLLRFARRQTRRAADAEDLLQEALIVALRARRLPVGENRAWFRGVIRNLATMQARTAARRIRREQQMPL
PDSEDDVAVSDVLAFAATLTPRLRIVMLLAIAGHNRPEIRHLLRISDEALRQRILMLRRAWRDADRADANPGMIGLNCLL
ENGRIRQALLPMTRGNRAAFASHDPDGHLFAINFSPRTPHETAAGGNKPVYKQKGAINAI

Sequences:

>Translated_220_residues
MTGHLTSAHYSDLLRFARRQTRRAADAEDLLQEALIVALRARRLPVGENRAWFRGVIRNLATMQARTAARRIRREQQMPL
PDSEDDVAVSDVLAFAATLTPRLRIVMLLAIAGHNRPEIRHLLRISDEALRQRILMLRRAWRDADRADANPGMIGLNCLL
ENGRIRQALLPMTRGNRAAFASHDPDGHLFAINFSPRTPHETAAGGNKPVYKQKGAINAI
>Mature_219_residues
TGHLTSAHYSDLLRFARRQTRRAADAEDLLQEALIVALRARRLPVGENRAWFRGVIRNLATMQARTAARRIRREQQMPLP
DSEDDVAVSDVLAFAATLTPRLRIVMLLAIAGHNRPEIRHLLRISDEALRQRILMLRRAWRDADRADANPGMIGLNCLLE
NGRIRQALLPMTRGNRAAFASHDPDGHLFAINFSPRTPHETAAGGNKPVYKQKGAINAI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24714; Mature: 24583

Theoretical pI: Translated: 11.89; Mature: 11.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGHLTSAHYSDLLRFARRQTRRAADAEDLLQEALIVALRARRLPVGENRAWFRGVIRNL
CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
ATMQARTAARRIRREQQMPLPDSEDDVAVSDVLAFAATLTPRLRIVMLLAIAGHNRPEIR
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
HLLRISDEALRQRILMLRRAWRDADRADANPGMIGLNCLLENGRIRQALLPMTRGNRAAF
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHEEEECCCCHHHHHCCCCCCCCCEE
ASHDPDGHLFAINFSPRTPHETAAGGNKPVYKQKGAINAI
CCCCCCCCEEEEECCCCCCCHHCCCCCCCCHHCCCCCCCC
>Mature Secondary Structure 
TGHLTSAHYSDLLRFARRQTRRAADAEDLLQEALIVALRARRLPVGENRAWFRGVIRNL
CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
ATMQARTAARRIRREQQMPLPDSEDDVAVSDVLAFAATLTPRLRIVMLLAIAGHNRPEIR
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
HLLRISDEALRQRILMLRRAWRDADRADANPGMIGLNCLLENGRIRQALLPMTRGNRAAF
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHEEEECCCCHHHHHCCCCCCCCCEE
ASHDPDGHLFAINFSPRTPHETAAGGNKPVYKQKGAINAI
CCCCCCCCEEEEECCCCCCCHHCCCCCCCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA