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The map label for this gene is mdcF [H]

Identifier: 150398610

GI number: 150398610

Start: 3629371

End: 3630315

Strand: Direct

Name: mdcF [H]

Synonym: Smed_3424

Alternate gene names: 150398610

Gene position: 3629371-3630315 (Clockwise)

Preceding gene: 150398608

Following gene: 150398613

Centisome position: 95.97

GC content: 64.34

Gene sequence:

>945_bases
ATGTCCGACGTCTTCCTGAACGTTCTACCGATCTTTGTCCTGATCCTGACCGGCTGGCTCATCGTCCGCCTCGGCTATCT
GAAGCCGGCTGTCGGCGAAGCGCTCGGCGACTTCGTCTTCCGGGTCGCGGTGCCCGTGCTTCTTTTTCGTACCATCGCCG
AGGCGGATTTCAAGGAAGGGTCCCCCTGGCCGCTCTGGGTCGCCTACTTCTCCGGCGTCGCGGTGACCTGGGCCATCGGC
CACCTTGCAGCAACGATCGGGTTCGGTCGCGACGCGCGCATGGGGGTGCTTGCGGGCGTCTCGTCCGCCTTCGCCAATAC
CGTCTTCATTGGACTGCCCCTGGTTTCCCGTCTTGTCGGCGAAGACGGCATCGTTGCCCTGTCGATCCTGCTCTCGGTCC
ATCTGCCGGTCATGATGATCGCCGGAACGGTTCTGATGGAGAGAGCGGATCGCCAGACGACCGGAACGCCGGGGCAGGGG
ATATGGAAACTCATGGGCGGTGTTGCGCGCAATCTGGTCCGCAATCCGCTTGTGATAGGCCTTGCCTGTGGCGCTCTCTT
CCACCTTCTCGGGCAGCCGCTCGGCGGGCCGGTGAAGACCGTCGTCGACCAGCTTGCAGGCGTTGCGGCGCCTGCAGCGC
TCGTCTCTATCGGCATGGCCCTCGACAAGTACGGCCTTGCCGGCAACACCGGCCTTGCAACCGTGACGAGCACGCTCAAG
CTCCTGGTGCTGCCCGGCGCCGTTTTTGCCGCGTGCCACCTGCTGGGCCTGAACGACAGCTGGACCGCGGCGCTGGTGCT
CACCTCCTCAGTCCCGACCGGCGTCAACGCCTGGCTGATCGCCAACCACTTCAATGTCGGACACGGGCTCGCCTCCTCGA
CCATTACGCTGACGACCGCGCTCGGCGTGGTCAGCGTGTCGATATGGGCTTATCTCTTGATGTGA

Upstream 100 bases:

>100_bases
GCTCGCTGCGGCCCCGATTCAAGTCGTCTCATCGGATGAGCCTCCCTTGCCTCCGCGGCGCGAACGGGTCTATGGCTTGG
AAACCATTCAAGGCTCTTCC

Downstream 100 bases:

>100_bases
GGGGCCGCTGACCAGACACGCTTATGGCGGTTAGAACAGCCGGTCGAGCCAGCCATGCCTGTCCGGCGCGCGGCCGTTCT
GGATATCGAGCAGTGCCGCC

Product: auxin efflux carrier

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MSDVFLNVLPIFVLILTGWLIVRLGYLKPAVGEALGDFVFRVAVPVLLFRTIAEADFKEGSPWPLWVAYFSGVAVTWAIG
HLAATIGFGRDARMGVLAGVSSAFANTVFIGLPLVSRLVGEDGIVALSILLSVHLPVMMIAGTVLMERADRQTTGTPGQG
IWKLMGGVARNLVRNPLVIGLACGALFHLLGQPLGGPVKTVVDQLAGVAAPAALVSIGMALDKYGLAGNTGLATVTSTLK
LLVLPGAVFAACHLLGLNDSWTAALVLTSSVPTGVNAWLIANHFNVGHGLASSTITLTTALGVVSVSIWAYLLM

Sequences:

>Translated_314_residues
MSDVFLNVLPIFVLILTGWLIVRLGYLKPAVGEALGDFVFRVAVPVLLFRTIAEADFKEGSPWPLWVAYFSGVAVTWAIG
HLAATIGFGRDARMGVLAGVSSAFANTVFIGLPLVSRLVGEDGIVALSILLSVHLPVMMIAGTVLMERADRQTTGTPGQG
IWKLMGGVARNLVRNPLVIGLACGALFHLLGQPLGGPVKTVVDQLAGVAAPAALVSIGMALDKYGLAGNTGLATVTSTLK
LLVLPGAVFAACHLLGLNDSWTAALVLTSSVPTGVNAWLIANHFNVGHGLASSTITLTTALGVVSVSIWAYLLM
>Mature_313_residues
SDVFLNVLPIFVLILTGWLIVRLGYLKPAVGEALGDFVFRVAVPVLLFRTIAEADFKEGSPWPLWVAYFSGVAVTWAIGH
LAATIGFGRDARMGVLAGVSSAFANTVFIGLPLVSRLVGEDGIVALSILLSVHLPVMMIAGTVLMERADRQTTGTPGQGI
WKLMGGVARNLVRNPLVIGLACGALFHLLGQPLGGPVKTVVDQLAGVAAPAALVSIGMALDKYGLAGNTGLATVTSTLKL
LVLPGAVFAACHLLGLNDSWTAALVLTSSVPTGVNAWLIANHFNVGHGLASSTITLTTALGVVSVSIWAYLLM

Specific function: Unknown

COG id: COG0679

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the auxin efflux carrier (TC 2.A.69) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004776 [H]

Pfam domain/function: PF03547 Mem_trans [H]

EC number: NA

Molecular weight: Translated: 32644; Mature: 32513

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDVFLNVLPIFVLILTGWLIVRLGYLKPAVGEALGDFVFRVAVPVLLFRTIAEADFKEG
CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SPWPLWVAYFSGVAVTWAIGHLAATIGFGRDARMGVLAGVSSAFANTVFIGLPLVSRLVG
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
EDGIVALSILLSVHLPVMMIAGTVLMERADRQTTGTPGQGIWKLMGGVARNLVRNPLVIG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHH
LACGALFHLLGQPLGGPVKTVVDQLAGVAAPAALVSIGMALDKYGLAGNTGLATVTSTLK
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
LLVLPGAVFAACHLLGLNDSWTAALVLTSSVPTGVNAWLIANHFNVGHGLASSTITLTTA
HHHCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCHHHHHHH
LGVVSVSIWAYLLM
HHHHHHHHHHHHHC
>Mature Secondary Structure 
SDVFLNVLPIFVLILTGWLIVRLGYLKPAVGEALGDFVFRVAVPVLLFRTIAEADFKEG
CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SPWPLWVAYFSGVAVTWAIGHLAATIGFGRDARMGVLAGVSSAFANTVFIGLPLVSRLVG
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
EDGIVALSILLSVHLPVMMIAGTVLMERADRQTTGTPGQGIWKLMGGVARNLVRNPLVIG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHH
LACGALFHLLGQPLGGPVKTVVDQLAGVAAPAALVSIGMALDKYGLAGNTGLATVTSTLK
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
LLVLPGAVFAACHLLGLNDSWTAALVLTSSVPTGVNAWLIANHFNVGHGLASSTITLTTA
HHHCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCHHHHHHH
LGVVSVSIWAYLLM
HHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10858449; 11481430 [H]