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The map label for this gene is yvoA [H]

Identifier: 150398597

GI number: 150398597

Start: 3615557

End: 3616321

Strand: Direct

Name: yvoA [H]

Synonym: Smed_3408

Alternate gene names: 150398597

Gene position: 3615557-3616321 (Clockwise)

Preceding gene: 150398596

Following gene: 150398598

Centisome position: 95.6

GC content: 64.18

Gene sequence:

>765_bases
ATGAACCAGCAGCTCGCCGCCATTTTGCCGCTCGAGACCCTGCAGTCGGGTGGCGCCGGGCCGCTTTACCTGAAGCTCAG
GCAGTCGCTCGAAGAAGCGATCCTGTCGGGAAAGCTCAAACAAGGAGACGCGCTGCCGCCGGAGCGCGATCTTGCCGATT
ACGCCAATGTCAGCCGCGTCACCGTCCGCAAAGCGGTCGATGACCTCGTGCGCGACGGGCTTCTGGTGCGTCGCCACGGT
TCCGGCACCTTCGTCGTTCGGCCCGTTTCTCGCGTCGAGCAGTCGCTCTCGCGCCTGACCTCCTTCACCGAGGACATGGT
CAGGCGGGGACTCAACACACGCGCGGAATGGCTGGAGCGCGGCCTTTTTCAACCCTCGCCGGACGAGATGATGACCTTGG
GGCTTGCGGCCGGCGCGCTTGTGGCGCGTCTCGGGCGGCTGCGAATTGCCGATGACATGCCGCTTGCGATCGAGCGTGCC
TGTGTATCGGCGGAGTTCGTACCCGATCCGCTTGCCGTCACCTCGTCGCTCTATTCGGCGCTCGAGAAGAAGAACGCCCG
GCCCGTGCGCGCTGTGCAGCGCATCTCCGCCTGCAATATAAAGGAACCGGATGCGGCAATGCTCGGCGTCTCCGTCGGCG
CCGCCGGACTTTCGATCGAGCGCGTCTCCTATCTTTCTTCCGGACGCGTGGTCGAATTCACCCGGTCGCTCTATCGAGGC
GACACCTATGATTTCGTGGCGGAGCTGACGATTCCGGAGCAGTGA

Upstream 100 bases:

>100_bases
ACCGACATCAGCCGTGTTTCGTCGAGGCTGAGGCGGACGCGTTGACGGGTGCCGTCGCGCTCGCCGCAGCCCGCTTCGGC
TCCCATTCCGGGGTCCCGGC

Downstream 100 bases:

>100_bases
GCCGGAATGGCGGCCCCCAGTTGATTATGGAAGGACATGATGATGCAGACCAACATGCGGCGAGAAATCGACGAGATTCC
CGAGGCCGCCGCCCGGCTGC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MNQQLAAILPLETLQSGGAGPLYLKLRQSLEEAILSGKLKQGDALPPERDLADYANVSRVTVRKAVDDLVRDGLLVRRHG
SGTFVVRPVSRVEQSLSRLTSFTEDMVRRGLNTRAEWLERGLFQPSPDEMMTLGLAAGALVARLGRLRIADDMPLAIERA
CVSAEFVPDPLAVTSSLYSALEKKNARPVRAVQRISACNIKEPDAAMLGVSVGAAGLSIERVSYLSSGRVVEFTRSLYRG
DTYDFVAELTIPEQ

Sequences:

>Translated_254_residues
MNQQLAAILPLETLQSGGAGPLYLKLRQSLEEAILSGKLKQGDALPPERDLADYANVSRVTVRKAVDDLVRDGLLVRRHG
SGTFVVRPVSRVEQSLSRLTSFTEDMVRRGLNTRAEWLERGLFQPSPDEMMTLGLAAGALVARLGRLRIADDMPLAIERA
CVSAEFVPDPLAVTSSLYSALEKKNARPVRAVQRISACNIKEPDAAMLGVSVGAAGLSIERVSYLSSGRVVEFTRSLYRG
DTYDFVAELTIPEQ
>Mature_254_residues
MNQQLAAILPLETLQSGGAGPLYLKLRQSLEEAILSGKLKQGDALPPERDLADYANVSRVTVRKAVDDLVRDGLLVRRHG
SGTFVVRPVSRVEQSLSRLTSFTEDMVRRGLNTRAEWLERGLFQPSPDEMMTLGLAAGALVARLGRLRIADDMPLAIERA
CVSAEFVPDPLAVTSSLYSALEKKNARPVRAVQRISACNIKEPDAAMLGVSVGAAGLSIERVSYLSSGRVVEFTRSLYRG
DTYDFVAELTIPEQ

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788418, Length=250, Percent_Identity=31.6, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1786950, Length=236, Percent_Identity=33.0508474576271, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI87082252, Length=224, Percent_Identity=28.5714285714286, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1786303, Length=60, Percent_Identity=51.6666666666667, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1790118, Length=114, Percent_Identity=35.9649122807018, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27711; Mature: 27711

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQQLAAILPLETLQSGGAGPLYLKLRQSLEEAILSGKLKQGDALPPERDLADYANVSRV
CCCCHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
TVRKAVDDLVRDGLLVRRHGSGTFVVRPVSRVEQSLSRLTSFTEDMVRRGLNTRAEWLER
HHHHHHHHHHHCCEEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
GLFQPSPDEMMTLGLAAGALVARLGRLRIADDMPLAIERACVSAEFVPDPLAVTSSLYSA
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
LEKKNARPVRAVQRISACNIKEPDAAMLGVSVGAAGLSIERVSYLSSGRVVEFTRSLYRG
HHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHCC
DTYDFVAELTIPEQ
CCHHEEEEECCCCC
>Mature Secondary Structure
MNQQLAAILPLETLQSGGAGPLYLKLRQSLEEAILSGKLKQGDALPPERDLADYANVSRV
CCCCHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
TVRKAVDDLVRDGLLVRRHGSGTFVVRPVSRVEQSLSRLTSFTEDMVRRGLNTRAEWLER
HHHHHHHHHHHCCEEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
GLFQPSPDEMMTLGLAAGALVARLGRLRIADDMPLAIERACVSAEFVPDPLAVTSSLYSA
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
LEKKNARPVRAVQRISACNIKEPDAAMLGVSVGAAGLSIERVSYLSSGRVVEFTRSLYRG
HHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHCC
DTYDFVAELTIPEQ
CCHHEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]