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The map label for this gene is ybhN [C]

Identifier: 150398573

GI number: 150398573

Start: 3587713

End: 3588660

Strand: Direct

Name: ybhN [C]

Synonym: Smed_3384

Alternate gene names: 150398573

Gene position: 3587713-3588660 (Clockwise)

Preceding gene: 150398572

Following gene: 150398577

Centisome position: 94.87

GC content: 58.86

Gene sequence:

>948_bases
ATGAATCGGTTCAAAGCATATTTCTGGCCCATTGTCGGGCTTATGGCCATCGTGATTTCGGTGCGCGCCCTTATCGATGA
ACTACGCGGCCTGTCGCTCAACGAATTCCTGGCAAGCTTCCAGGCCATATCGCTTGAAAGCTGGCTGCTCGCAATCGGTT
CGACGCTTCTGGCCTATGCGGCTCTTGCCGCTTACGACAAGCTGGCGCTCGACCACCTCGGCCATCGAATCTCGCTCTGG
TTCATCACGCTCTGCTCGTTCACCACCTATGCATTGTCGCATAATCTCGGCGCCTCGGTTTTTTCCGGCGCCGTGGTGCG
TTATCGCGCCTACCGGTCGAAAGGCCTGACGGCCGGAGAGGTGGGCGTTCTCGTTGCCTTCTGCTCCTTCACCTTCACGC
TCGGCACGCTGGTGCTCTCGGCAATCGTTCTGATTCTGAAGCCCAACATAATCGAGAGATTTTCGGAGTTCCTGCCGCTC
GAAATGTCGTTGACGACAGGCGGGCTCATTCTGGCGCTCATAGCGCTTTACGTGCTCGGCAGCCTGGTCGGGCTCAGACC
TCTGCACACACGCTGGTTCCAGCTGCACTATCCGCGGCCCTCCATCGTGCTGAGGCAGTTGATCATCGGCCCTCTGGAGC
TTCTGGGTGCTGCCGGCATCATCTATTTCGCGCTGCCGGAAGCCGGCAATCCCGGCTACGTCGTCATTCTCGGCATTTTC
CTGGCATCCTTTTCCGCCGCGCTTCTCTCCCATGCGCCCGGCGGACTCGGCGTGCTCGAACTCGTCTTCATCGCTGCGCT
TCCGGAAATGGATCCGGCCGACGTTCTGGCTGCACTGGCAATTTTCCGGCTGCTCTATCTCCTCATCCCCTTCGTTATGG
CTCTGGTTGTTATCCTCGCCTTCGAGCATTCCCGCTTTGTGGAGGAGCGGAGCGAGAAGGAGCCATAG

Upstream 100 bases:

>100_bases
CGGCATGCCCACAAACGGCTGCTGCCGTCGGGCATTTGCGCCGCAAGGCTCCTACCTTCGTGATTAGATTTCCGAGAGGG
AATCACGCAGAAGCGCCGGC

Downstream 100 bases:

>100_bases
CGAAGGGACGCGAGATGCGAGCGGAAAACCGCATCTCAGGCGCCTGGAAATTCAAGGAATGTTGCAGGTGGCGGGGAGCG
CCTTCTCTATCGGCCCTTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MNRFKAYFWPIVGLMAIVISVRALIDELRGLSLNEFLASFQAISLESWLLAIGSTLLAYAALAAYDKLALDHLGHRISLW
FITLCSFTTYALSHNLGASVFSGAVVRYRAYRSKGLTAGEVGVLVAFCSFTFTLGTLVLSAIVLILKPNIIERFSEFLPL
EMSLTTGGLILALIALYVLGSLVGLRPLHTRWFQLHYPRPSIVLRQLIIGPLELLGAAGIIYFALPEAGNPGYVVILGIF
LASFSAALLSHAPGGLGVLELVFIAALPEMDPADVLAALAIFRLLYLLIPFVMALVVILAFEHSRFVEERSEKEP

Sequences:

>Translated_315_residues
MNRFKAYFWPIVGLMAIVISVRALIDELRGLSLNEFLASFQAISLESWLLAIGSTLLAYAALAAYDKLALDHLGHRISLW
FITLCSFTTYALSHNLGASVFSGAVVRYRAYRSKGLTAGEVGVLVAFCSFTFTLGTLVLSAIVLILKPNIIERFSEFLPL
EMSLTTGGLILALIALYVLGSLVGLRPLHTRWFQLHYPRPSIVLRQLIIGPLELLGAAGIIYFALPEAGNPGYVVILGIF
LASFSAALLSHAPGGLGVLELVFIAALPEMDPADVLAALAIFRLLYLLIPFVMALVVILAFEHSRFVEERSEKEP
>Mature_315_residues
MNRFKAYFWPIVGLMAIVISVRALIDELRGLSLNEFLASFQAISLESWLLAIGSTLLAYAALAAYDKLALDHLGHRISLW
FITLCSFTTYALSHNLGASVFSGAVVRYRAYRSKGLTAGEVGVLVAFCSFTFTLGTLVLSAIVLILKPNIIERFSEFLPL
EMSLTTGGLILALIALYVLGSLVGLRPLHTRWFQLHYPRPSIVLRQLIIGPLELLGAAGIIYFALPEAGNPGYVVILGIF
LASFSAALLSHAPGGLGVLELVFIAALPEMDPADVLAALAIFRLLYLLIPFVMALVVILAFEHSRFVEERSEKEP

Specific function: Unknown

COG id: COG0392

COG function: function code S; Predicted integral membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybhN [H]

Homologues:

Organism=Escherichia coli, GI1787006, Length=271, Percent_Identity=29.8892988929889, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022791 [H]

Pfam domain/function: PF03706 UPF0104 [H]

EC number: NA

Molecular weight: Translated: 34366; Mature: 34366

Theoretical pI: Translated: 7.21; Mature: 7.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRFKAYFWPIVGLMAIVISVRALIDELRGLSLNEFLASFQAISLESWLLAIGSTLLAYA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALAAYDKLALDHLGHRISLWFITLCSFTTYALSHNLGASVFSGAVVRYRAYRSKGLTAGE
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHH
VGVLVAFCSFTFTLGTLVLSAIVLILKPNIIERFSEFLPLEMSLTTGGLILALIALYVLG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHH
SLVGLRPLHTRWFQLHYPRPSIVLRQLIIGPLELLGAAGIIYFALPEAGNPGYVVILGIF
HHHCCCHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCEEHHHHHH
LASFSAALLSHAPGGLGVLELVFIAALPEMDPADVLAALAIFRLLYLLIPFVMALVVILA
HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FEHSRFVEERSEKEP
HHHHHHHHHHHCCCC
>Mature Secondary Structure
MNRFKAYFWPIVGLMAIVISVRALIDELRGLSLNEFLASFQAISLESWLLAIGSTLLAYA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALAAYDKLALDHLGHRISLWFITLCSFTTYALSHNLGASVFSGAVVRYRAYRSKGLTAGE
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHH
VGVLVAFCSFTFTLGTLVLSAIVLILKPNIIERFSEFLPLEMSLTTGGLILALIALYVLG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHH
SLVGLRPLHTRWFQLHYPRPSIVLRQLIIGPLELLGAAGIIYFALPEAGNPGYVVILGIF
HHHCCCHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCEEHHHHHH
LASFSAALLSHAPGGLGVLELVFIAALPEMDPADVLAALAIFRLLYLLIPFVMALVVILA
HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FEHSRFVEERSEKEP
HHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]