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The map label for this gene is ydcN [C]

Identifier: 150398499

GI number: 150398499

Start: 3502836

End: 3503465

Strand: Direct

Name: ydcN [C]

Synonym: Smed_3309

Alternate gene names: 150398499

Gene position: 3502836-3503465 (Clockwise)

Preceding gene: 150398491

Following gene: 150398500

Centisome position: 92.62

GC content: 58.73

Gene sequence:

>630_bases
ATGACCAATGATCTCGTACCACTGGACGCACCGCCGCGGCCGCGATCCCGGCGTTCGATTGCCGAAACCTTGCGCCAGTT
GCGGCAGGAAAATGGTCTGACCCTCAACGAACTGGCGCGAAGATGCGCTCTGGCGCCTTCGACGCTTTCCAAGATCGAGA
ACGGACAGATGTCGCCGACCTACGACACGATCCTCAGCCTGGCGGAGGGGCTTGGCGCCGACGTTGCCGAGTTGTTCGCA
CGGCGTCAGACCACCACGGTCAGCGGCCGGCGTACCATCAACCGCGCCGGAGATGGTGTCGCCCACAATACAGATCAGTA
CGATTATCAAATGCTGTGCACCGAACTGGCCCACAAGCAGTTCGTGCCGCTCAAGGCAATCATCAAGGCCAATTCGATCA
GCCGCTTTGGTGGCATGCTGTCTCATTCCGGCGAGGAATTTGTCTATGTGCTGTCCGGCGAAATCGAGCTCCACACGCAA
TTTTATGCACCCACGCGTCTCCATACCGGCGACAGTTGCTATTTCGACAGCACGATGGGCCACGCATTGCTGAAGGCCTC
CGAAGAGGATGCCGAGGTCTTATGGGTCTGCTCGCGGATCATCGAACCGCTCAAGGATAACGGGTCATGA

Upstream 100 bases:

>100_bases
CAGGCGGAACATGGCATCGCAATCGCTTCCCAGGGCCTTCCCGCTCTGAACGCATTGGCTATAGCCAAAAGAAATAGACA
CCGCAGAGGACGCGGACCCG

Downstream 100 bases:

>100_bases
TGCTGCTCGTGGTTCCAGTTGCAGATTAAGTTGCATGAGAAGAAATATTTTTTCCTGTTAATTGATTTGACCGAACTGCT
CTGCTAGCAATTGCACCATC

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator XRE Family; Cro/CI Family Transcriptional Regulator; Transcriptional Regulator HTH_3 Family; MerR Family Transcriptional Regulator; Helix-Turn-Helix Family; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator Cro/CI Family; Transcriptional Regulator Protein; Transcriptional Regulator Xre Family; XRE Family-Like Protein; Cupin 2 Conserved Barrel Domain Protein; Epoxidase; Cupin 2 Domain-Containing Protein; Regulatory Protein; Helix-Turn-Helix Family Protein; Transcription Regulator Protein; Transcription Regulator; Transcriptional Regulator XRE Family With Cupin Sensor; HTH_3family Transcriptional Regulator

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MTNDLVPLDAPPRPRSRRSIAETLRQLRQENGLTLNELARRCALAPSTLSKIENGQMSPTYDTILSLAEGLGADVAELFA
RRQTTTVSGRRTINRAGDGVAHNTDQYDYQMLCTELAHKQFVPLKAIIKANSISRFGGMLSHSGEEFVYVLSGEIELHTQ
FYAPTRLHTGDSCYFDSTMGHALLKASEEDAEVLWVCSRIIEPLKDNGS

Sequences:

>Translated_209_residues
MTNDLVPLDAPPRPRSRRSIAETLRQLRQENGLTLNELARRCALAPSTLSKIENGQMSPTYDTILSLAEGLGADVAELFA
RRQTTTVSGRRTINRAGDGVAHNTDQYDYQMLCTELAHKQFVPLKAIIKANSISRFGGMLSHSGEEFVYVLSGEIELHTQ
FYAPTRLHTGDSCYFDSTMGHALLKASEEDAEVLWVCSRIIEPLKDNGS
>Mature_208_residues
TNDLVPLDAPPRPRSRRSIAETLRQLRQENGLTLNELARRCALAPSTLSKIENGQMSPTYDTILSLAEGLGADVAELFAR
RQTTTVSGRRTINRAGDGVAHNTDQYDYQMLCTELAHKQFVPLKAIIKANSISRFGGMLSHSGEEFVYVLSGEIELHTQF
YAPTRLHTGDSCYFDSTMGHALLKASEEDAEVLWVCSRIIEPLKDNGS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23156; Mature: 23025

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNDLVPLDAPPRPRSRRSIAETLRQLRQENGLTLNELARRCALAPSTLSKIENGQMSPT
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHCCCCCCCH
YDTILSLAEGLGADVAELFARRQTTTVSGRRTINRAGDGVAHNTDQYDYQMLCTELAHKQ
HHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
FVPLKAIIKANSISRFGGMLSHSGEEFVYVLSGEIELHTQFYAPTRLHTGDSCYFDSTMG
CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEEEECCCEECCCCCCEECHHHH
HALLKASEEDAEVLWVCSRIIEPLKDNGS
HHHHHCCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TNDLVPLDAPPRPRSRRSIAETLRQLRQENGLTLNELARRCALAPSTLSKIENGQMSPT
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHCCCCCCCH
YDTILSLAEGLGADVAELFARRQTTTVSGRRTINRAGDGVAHNTDQYDYQMLCTELAHKQ
HHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
FVPLKAIIKANSISRFGGMLSHSGEEFVYVLSGEIELHTQFYAPTRLHTGDSCYFDSTMG
CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEEEECCCEECCCCCCEECHHHH
HALLKASEEDAEVLWVCSRIIEPLKDNGS
HHHHHCCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA