Click here to switch to the map view.

The map label for this gene is ycjC [C]

Identifier: 150398491

GI number: 150398491

Start: 3492107

End: 3492811

Strand: Direct

Name: ycjC [C]

Synonym: Smed_3301

Alternate gene names: 150398491

Gene position: 3492107-3492811 (Clockwise)

Preceding gene: 150398484

Following gene: 150398499

Centisome position: 92.34

GC content: 61.84

Gene sequence:

>705_bases
ATGGCTGGGGAAAACGCGGGAAAGCAACGGAACTCGAAGAAGAACGGCAAGGCGGCGCCGGGCCTGACGCGTGTGACGCC
GCTGACCCAGGATCCGCATGCCATTCGTGACACCCGGGAAAAGGTGCTGGAGGTAGCGATCGGGCATGAGGTGCGCGCCT
TCCGCAAGAAGCTCGGCATTACGGTCGCCGATGTTGCCTCCGCCACCGACATCTCGGTCGGCATGCTGTCGAAGATCGAA
AACGGCAACACATCGCCATCGCTGACGACGCTGCAGACGCTGTCGCGGGCACTCGGCGTACCGATCACCGCGTTTTTCCG
CCGCTTCGAAGAGGAGCATAGCGCCGTTTTCGTGAAGGCGGGGGAGGGCGTTGACGTCGAGCGACGCGGCACCCGCGCCG
GGCATCAATATAACCTCCTCGGCCATATCGGCTCGAACACGTCAGGCGTCGTCGTCGAGCCTTACCTGATCACGCTGACC
GAAAACTCCGACATATTTCCGACGTTTCAGCACGATGGTCTGGAGTTCCTCTACATGCTGGAAGGCGAGGTCGTTTATCG
GCATGGCAACAACCTCTACCGCATGACTCCGGGCGACAGCCTGTTCTTCGACGCCGACGCGCCGCACGGGCCGGAAGAAC
TGACCACGCTGCCGATCCGGTATCTGTCCATCATTTCCTATCCGCGCGGCCGCGGAGAGGATTAG

Upstream 100 bases:

>100_bases
GCATCAGAAGGTCATGTGGCGCAGGCCGCCGCGGTGTTGATCTTCCGTCGCGGAAGACGCAAATGTAGCTACTGTCAGTG
AAAATCGGAGTGAGATCGGC

Downstream 100 bases:

>100_bases
ATCATGATGTTTTTAGGTCGATCCGCCTAAAAACATCCGGCTCTAAAGAATGTCGTCGCGCAGACAGGCCTTGAAATGGT
TGGGCGCCACTTCGCGCAGC

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator; HTH-Type Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator Merr Family; Cupin 2 Domain-Containing Protein; Helix-Turn-Helix Domain Protein; Transcriptional Regulator Protein; Transcriptional Regulator MerR Family; Cupin Domain Protein; Epoxidase; Helix-Turn-Helix Transcriptional Regulator; Cro/CI Family Transcriptional Regulator; Xre Family xin-Antitoxin System Antitoxin Component; Cupin 2 Conserved Barrel Domain Protein

Number of amino acids: Translated: 234; Mature: 233

Protein sequence:

>234_residues
MAGENAGKQRNSKKNGKAAPGLTRVTPLTQDPHAIRDTREKVLEVAIGHEVRAFRKKLGITVADVASATDISVGMLSKIE
NGNTSPSLTTLQTLSRALGVPITAFFRRFEEEHSAVFVKAGEGVDVERRGTRAGHQYNLLGHIGSNTSGVVVEPYLITLT
ENSDIFPTFQHDGLEFLYMLEGEVVYRHGNNLYRMTPGDSLFFDADAPHGPEELTTLPIRYLSIISYPRGRGED

Sequences:

>Translated_234_residues
MAGENAGKQRNSKKNGKAAPGLTRVTPLTQDPHAIRDTREKVLEVAIGHEVRAFRKKLGITVADVASATDISVGMLSKIE
NGNTSPSLTTLQTLSRALGVPITAFFRRFEEEHSAVFVKAGEGVDVERRGTRAGHQYNLLGHIGSNTSGVVVEPYLITLT
ENSDIFPTFQHDGLEFLYMLEGEVVYRHGNNLYRMTPGDSLFFDADAPHGPEELTTLPIRYLSIISYPRGRGED
>Mature_233_residues
AGENAGKQRNSKKNGKAAPGLTRVTPLTQDPHAIRDTREKVLEVAIGHEVRAFRKKLGITVADVASATDISVGMLSKIEN
GNTSPSLTTLQTLSRALGVPITAFFRRFEEEHSAVFVKAGEGVDVERRGTRAGHQYNLLGHIGSNTSGVVVEPYLITLTE
NSDIFPTFQHDGLEFLYMLEGEVVYRHGNNLYRMTPGDSLFFDADAPHGPEELTTLPIRYLSIISYPRGRGED

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25680; Mature: 25549

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGENAGKQRNSKKNGKAAPGLTRVTPLTQDPHAIRDTREKVLEVAIGHEVRAFRKKLGI
CCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHCC
TVADVASATDISVGMLSKIENGNTSPSLTTLQTLSRALGVPITAFFRRFEEEHSAVFVKA
EEEHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEC
GEGVDVERRGTRAGHQYNLLGHIGSNTSGVVVEPYLITLTENSDIFPTFQHDGLEFLYML
CCCCCHHCCCCCCCCEEEEEEECCCCCCCEEECCEEEEEECCCCCCCCCCCCCEEEEEEE
EGEVVYRHGNNLYRMTPGDSLFFDADAPHGPEELTTLPIRYLSIISYPRGRGED
CCEEEEEECCEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
AGENAGKQRNSKKNGKAAPGLTRVTPLTQDPHAIRDTREKVLEVAIGHEVRAFRKKLGI
CCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHCC
TVADVASATDISVGMLSKIENGNTSPSLTTLQTLSRALGVPITAFFRRFEEEHSAVFVKA
EEEHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEC
GEGVDVERRGTRAGHQYNLLGHIGSNTSGVVVEPYLITLTENSDIFPTFQHDGLEFLYML
CCCCCHHCCCCCCCCEEEEEEECCCCCCCEEECCEEEEEECCCCCCCCCCCCCEEEEEEE
EGEVVYRHGNNLYRMTPGDSLFFDADAPHGPEELTTLPIRYLSIISYPRGRGED
CCEEEEEECCEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA