Click here to switch to the map view.

The map label for this gene is ygaU [H]

Identifier: 150398447

GI number: 150398447

Start: 3436779

End: 3437252

Strand: Direct

Name: ygaU [H]

Synonym: Smed_3255

Alternate gene names: 150398447

Gene position: 3436779-3437252 (Clockwise)

Preceding gene: 150398446

Following gene: 150398448

Centisome position: 90.87

GC content: 60.34

Gene sequence:

>474_bases
ATGGGTCTGTTCAGTTTCATCAAGAATGCGGGAAAGAAGCTCGGGCTTGGCGGAGACGATACGCCGCCGGACGCGGCGAG
CGTCGAAAAGGAGCTTGCTTCCCATGATCTCGGCACCAATGACGTCAAGATCGACGTCGTGGATGACAAAGTGGTGCTGA
AGGGTGTCGTCAAGGACCAGTCGACCTTCGAGAAAGCGGTCGTGGCCGTCGGCAACACGCTCGGCATATCGAAGGTCGAG
GCGTCCGAGCTCAAGGTGGCCGATGGCGCCGCTGCTCCGGCAGAGGCGAAGGCGCCGGTATTCTACACCGTGAAGAAGGG
CGACAATCTCTGGAAGATCGCCGAGGCGCATTACGGCAAGGGCAAGGGTGCCAAGCACACCGCGATCTTCGAGGCCAACA
AGCCCATGCTCACCCATCCCGACAAGATCTATCCGGGTCAGGTTCTGCGCATCCCGGACCTGGATGCGAGCTGA

Upstream 100 bases:

>100_bases
GCGGCGATTGACAGCTTGCGCAACTTGCGCCCGCTTCCCCTTGCCTTTTGCCGGCAACCGCCCTCTCTTATCTGGATAGT
CTGCGGAAGAGGAAACAACC

Downstream 100 bases:

>100_bases
ACGGGTCTGCTTTTCGGGTCGTTTCCAGCGGGGGTGAGCGCTACATCTCGTCACGTCCAGTCAGCTTTGCTGACGTAAGG
ACTTGATCGACATCGCAAGA

Product: LysM domain/BON superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MGLFSFIKNAGKKLGLGGDDTPPDAASVEKELASHDLGTNDVKIDVVDDKVVLKGVVKDQSTFEKAVVAVGNTLGISKVE
ASELKVADGAAAPAEAKAPVFYTVKKGDNLWKIAEAHYGKGKGAKHTAIFEANKPMLTHPDKIYPGQVLRIPDLDAS

Sequences:

>Translated_157_residues
MGLFSFIKNAGKKLGLGGDDTPPDAASVEKELASHDLGTNDVKIDVVDDKVVLKGVVKDQSTFEKAVVAVGNTLGISKVE
ASELKVADGAAAPAEAKAPVFYTVKKGDNLWKIAEAHYGKGKGAKHTAIFEANKPMLTHPDKIYPGQVLRIPDLDAS
>Mature_156_residues
GLFSFIKNAGKKLGLGGDDTPPDAASVEKELASHDLGTNDVKIDVVDDKVVLKGVVKDQSTFEKAVVAVGNTLGISKVEA
SELKVADGAAAPAEAKAPVFYTVKKGDNLWKIAEAHYGKGKGAKHTAIFEANKPMLTHPDKIYPGQVLRIPDLDAS

Specific function: Unknown

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789019, Length=157, Percent_Identity=43.312101910828, Blast_Score=100, Evalue=3e-23,

Paralogues:

None

Copy number: 4340 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR007055
- InterPro:   IPR014004 [H]

Pfam domain/function: PF04972 BON; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 16539; Mature: 16408

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS50914 BON

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLFSFIKNAGKKLGLGGDDTPPDAASVEKELASHDLGTNDVKIDVVDDKVVLKGVVKDQ
CCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCEEEHHHHCCH
STFEKAVVAVGNTLGISKVEASELKVADGAAAPAEAKAPVFYTVKKGDNLWKIAEAHYGK
HHHHHHHHHHCCCCCCCEECCCCEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCC
GKGAKHTAIFEANKPMLTHPDKIYPGQVLRIPDLDAS
CCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCC
>Mature Secondary Structure 
GLFSFIKNAGKKLGLGGDDTPPDAASVEKELASHDLGTNDVKIDVVDDKVVLKGVVKDQ
CHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCEEEHHHHCCH
STFEKAVVAVGNTLGISKVEASELKVADGAAAPAEAKAPVFYTVKKGDNLWKIAEAHYGK
HHHHHHHHHHCCCCCCCEECCCCEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCC
GKGAKHTAIFEANKPMLTHPDKIYPGQVLRIPDLDAS
CCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]