Click here to switch to the map view.

The map label for this gene is rplU [H]

Identifier: 150396118

GI number: 150396118

Start: 965614

End: 966276

Strand: Direct

Name: rplU [H]

Synonym: Smed_0895

Alternate gene names: 150396118

Gene position: 965614-966276 (Clockwise)

Preceding gene: 150396117

Following gene: 150396119

Centisome position: 25.53

GC content: 66.82

Gene sequence:

>663_bases
ATGGCTGGGGCACGCAAGGACGGACAGGATAGGGAAGCCGCAAGCGCGGCCGCTCCATTCGCATGGCCTCAGGGCGTCGA
CCCGGCCGATCCGTTCGGCATGGCCGAATGGATGAAGAATATGTCGAGCGCCGGCTTCCCCAATACAGGCCTGCCGAACG
CCGGATTGCATCCGTTGATGGCGCATCCGGCGGCGGCTGTTGCCGCCGCGACGGCGCTCGGTCTCGGCCTTTCGAGCCAG
ATCGCGGGCATGATGTTCGGCGCGATGCAGGGCGCGGCGAGCACCCTGCAGAAAGGCGTCGCAACGCCGCAAAAGGCAGA
GCCTTCGAAGCCGGCTCCGGCTCCGAAGGCTCCGGTACCCGTTGCTCCGGCCCCCACTGTTTCGGGCCCAAGGACGGAAG
TGCGCAAGCCGCGCAGGGTGACGAGCCGGGCTGCGGCACCGGTGGCGGAACTTGCAAGGGACGATCTGAAGCGTATCTCC
GGAATTGGCCCCAAGCTCGAGCAGGTTCTCAACGGCAGGGGGATTTTCCGCTTCGCCGACATGGCGGCCCTGAGCAAGGC
TGAGGTGGAGCGACTGGATAGCGAGCTCGGCCTTGGCGGCCGCGTGGTGCGCGACGACTGGATCGGGCAGGCGAAGGCGC
TGAAGAGAGCGCAACGGAATTGA

Upstream 100 bases:

>100_bases
TCATCAAGCATTTCCGCCCGGAAATGGAGAAGCGGATAGACGAATACACCCGCAACGCGACTTCGCAAGGCGCGGTGCTG
GAGGCAGCGGAGTAAGAAGA

Downstream 100 bases:

>100_bases
GGTGGCGACCGTCGGGTCACCACGGCAGGCGGCGAGACCGTGAAGGAATTGTCCGTCGCGTCCTGCAGGACGCGCGGCGC
TGTAGATAAGCAGACGGACT

Product: putative NADH dehydrogenase I chain E

Products: NAD+; ubiquinol

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MAGARKDGQDREAASAAAPFAWPQGVDPADPFGMAEWMKNMSSAGFPNTGLPNAGLHPLMAHPAAAVAAATALGLGLSSQ
IAGMMFGAMQGAASTLQKGVATPQKAEPSKPAPAPKAPVPVAPAPTVSGPRTEVRKPRRVTSRAAAPVAELARDDLKRIS
GIGPKLEQVLNGRGIFRFADMAALSKAEVERLDSELGLGGRVVRDDWIGQAKALKRAQRN

Sequences:

>Translated_220_residues
MAGARKDGQDREAASAAAPFAWPQGVDPADPFGMAEWMKNMSSAGFPNTGLPNAGLHPLMAHPAAAVAAATALGLGLSSQ
IAGMMFGAMQGAASTLQKGVATPQKAEPSKPAPAPKAPVPVAPAPTVSGPRTEVRKPRRVTSRAAAPVAELARDDLKRIS
GIGPKLEQVLNGRGIFRFADMAALSKAEVERLDSELGLGGRVVRDDWIGQAKALKRAQRN
>Mature_219_residues
AGARKDGQDREAASAAAPFAWPQGVDPADPFGMAEWMKNMSSAGFPNTGLPNAGLHPLMAHPAAAVAAATALGLGLSSQI
AGMMFGAMQGAASTLQKGVATPQKAEPSKPAPAPKAPVPVAPAPTVSGPRTEVRKPRRVTSRAAAPVAELARDDLKRISG
IGPKLEQVLNGRGIFRFADMAALSKAEVERLDSELGLGGRVVRDDWIGQAKALKRAQRN

Specific function: This protein binds to 23S rRNA in the presence of protein L20 [H]

COG id: COG3743

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L21P family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001787 [H]

Pfam domain/function: PF00829 Ribosomal_L21p [H]

EC number: 1.6.5.3

Molecular weight: Translated: 22757; Mature: 22626

Theoretical pI: Translated: 11.02; Mature: 11.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGARKDGQDREAASAAAPFAWPQGVDPADPFGMAEWMKNMSSAGFPNTGLPNAGLHPLM
CCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHH
AHPAAAVAAATALGLGLSSQIAGMMFGAMQGAASTLQKGVATPQKAEPSKPAPAPKAPVP
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
VAPAPTVSGPRTEVRKPRRVTSRAAAPVAELARDDLKRISGIGPKLEQVLNGRGIFRFAD
CCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHH
MAALSKAEVERLDSELGLGGRVVRDDWIGQAKALKRAQRN
HHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AGARKDGQDREAASAAAPFAWPQGVDPADPFGMAEWMKNMSSAGFPNTGLPNAGLHPLM
CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHH
AHPAAAVAAATALGLGLSSQIAGMMFGAMQGAASTLQKGVATPQKAEPSKPAPAPKAPVP
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
VAPAPTVSGPRTEVRKPRRVTSRAAAPVAELARDDLKRISGIGPKLEQVLNGRGIFRFAD
CCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHH
MAALSKAEVERLDSELGLGGRVVRDDWIGQAKALKRAQRN
HHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; H+; ubiquinone

Specific reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA