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The map label for this gene is cycH [H]

Identifier: 150395857

GI number: 150395857

Start: 678344

End: 679513

Strand: Direct

Name: cycH [H]

Synonym: Smed_0633

Alternate gene names: 150395857

Gene position: 678344-679513 (Clockwise)

Preceding gene: 150395856

Following gene: 150395858

Centisome position: 17.94

GC content: 64.96

Gene sequence:

>1170_bases
ATGTTGTTCTGGATCCTCGTGGCCATTCTGACGGCGGCTGTCGCAGCCGTGCTTCTTCTGCCGCTCATGCGAGCGGCAGC
GCCCCTGCCGTCTCGCCATAGTCACGATATCGAAGTCTATCGCGATCAGCTCGGCGAGCTGGCGCGGGACCGCGATGCCG
GACTGATCGGCAGCGAGGAGGCCGAGCTTGCCAGGGCCGAGATCGCCCGCCGCATGCTCGCGGCCAGTGCTGCAGATCAG
GCAGCCGCCGAACGCACCCCGAAGCGACTTCTTTCCAATCGCCTGTCGCAGGCGTTCATTTTCCTCTGTCTTCCGGCAAT
CGGACTCTGTCTCTATTTGACGACAGGGAGCCCCGGCGTGCCCGCACAGCCACTCGCGGCCCGGCTCGCCGACCCCAACG
GCGATGTCAATATTCTGATCGCCAAGGCCGAAAACCACCTGGCTCTCAATCCGGAGGACGGCGCCGGCTGGGACTTGCTG
GCGCCGATCTACATGCGCCATGGTCGCCTCGAAGACGCTGTTGCCGCCTACGACCGGGCGATCCGCTTGCTGGGGCCCAC
CCCGGCAAGAATGGGCGGCTATGCCGAGGCATTGGTGGCGCAGGGCGGCGGCCTGGTCACCTCCGAGGCGCAGAACGCTC
TGCGAAAGGCGCTTGCTCTCGATCCGAACGACCCGCGTTCCGCATTCTACCTGGCGCTTGGATTGAAGCAGGAGGGTAAA
AATGCGGAGGCACTCTCGGCATTCCGCAAGCTGGCAGGCAGCTCGCCGGCCGATGCGCCCTGGCTGCCCCTGGTGAACCA
GCACATAGCGGAGCTCGCCGACAGCCCGGCGGCCGTTGGTCCAACAGGCCCGGCCGCTACTGGCCCAGCCGCGCCGGGAA
ATCCGACGCCGGGCGATATCGCGGCGGCGAAAGAAATGAATGACGGCGATCGTCAGTCCATGATCCGCGGTATGGTCGAC
AGCCTGGCAAGCCGATTGAAGGAGGACCCGGCCAATCTGGAAGGCTGGATGCGTCTGATCCGCTCCTATGTCGTGCTAGA
TCAAAGGGACAGGGCGGAGGAAGCGCTGCACGAAGGACTGATCGCATTCCCGGCAACGGGCGTACAGGGGAAGCAACTGC
TGGCTTTGGCTCAGGAACTGGGGCTCGACGCCGGCGGAGACACTGAATGA

Upstream 100 bases:

>100_bases
CACGTCGCATGTCGACACGGCTTGCGGCGAAACGCCTCAAATCTCCGTCATCGCCGGTTTTCGAGTTGGAATGACATGAA
CGGCATAGTATTCCCCAAAC

Downstream 100 bases:

>100_bases
CACGCAAGCAGAAACGATTGGCAATCATCGGAGGTGGCGTCGGATTTCTGACGGCGGCGGTCCTGCTCGTCATGTTCGCT
TTTAGCCAGGCGGTCGCCTA

Product: cytochrome C-type biogenesis transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MLFWILVAILTAAVAAVLLLPLMRAAAPLPSRHSHDIEVYRDQLGELARDRDAGLIGSEEAELARAEIARRMLAASAADQ
AAAERTPKRLLSNRLSQAFIFLCLPAIGLCLYLTTGSPGVPAQPLAARLADPNGDVNILIAKAENHLALNPEDGAGWDLL
APIYMRHGRLEDAVAAYDRAIRLLGPTPARMGGYAEALVAQGGGLVTSEAQNALRKALALDPNDPRSAFYLALGLKQEGK
NAEALSAFRKLAGSSPADAPWLPLVNQHIAELADSPAAVGPTGPAATGPAAPGNPTPGDIAAAKEMNDGDRQSMIRGMVD
SLASRLKEDPANLEGWMRLIRSYVVLDQRDRAEEALHEGLIAFPATGVQGKQLLALAQELGLDAGGDTE

Sequences:

>Translated_389_residues
MLFWILVAILTAAVAAVLLLPLMRAAAPLPSRHSHDIEVYRDQLGELARDRDAGLIGSEEAELARAEIARRMLAASAADQ
AAAERTPKRLLSNRLSQAFIFLCLPAIGLCLYLTTGSPGVPAQPLAARLADPNGDVNILIAKAENHLALNPEDGAGWDLL
APIYMRHGRLEDAVAAYDRAIRLLGPTPARMGGYAEALVAQGGGLVTSEAQNALRKALALDPNDPRSAFYLALGLKQEGK
NAEALSAFRKLAGSSPADAPWLPLVNQHIAELADSPAAVGPTGPAATGPAAPGNPTPGDIAAAKEMNDGDRQSMIRGMVD
SLASRLKEDPANLEGWMRLIRSYVVLDQRDRAEEALHEGLIAFPATGVQGKQLLALAQELGLDAGGDTE
>Mature_389_residues
MLFWILVAILTAAVAAVLLLPLMRAAAPLPSRHSHDIEVYRDQLGELARDRDAGLIGSEEAELARAEIARRMLAASAADQ
AAAERTPKRLLSNRLSQAFIFLCLPAIGLCLYLTTGSPGVPAQPLAARLADPNGDVNILIAKAENHLALNPEDGAGWDLL
APIYMRHGRLEDAVAAYDRAIRLLGPTPARMGGYAEALVAQGGGLVTSEAQNALRKALALDPNDPRSAFYLALGLKQEGK
NAEALSAFRKLAGSSPADAPWLPLVNQHIAELADSPAAVGPTGPAATGPAAPGNPTPGDIAAAKEMNDGDRQSMIRGMVD
SLASRLKEDPANLEGWMRLIRSYVVLDQRDRAEEALHEGLIAFPATGVQGKQLLALAQELGLDAGGDTE

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40985; Mature: 40985

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFWILVAILTAAVAAVLLLPLMRAAAPLPSRHSHDIEVYRDQLGELARDRDAGLIGSEE
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHH
AELARAEIARRMLAASAADQAAAERTPKRLLSNRLSQAFIFLCLPAIGLCLYLTTGSPGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCC
PAQPLAARLADPNGDVNILIAKAENHLALNPEDGAGWDLLAPIYMRHGRLEDAVAAYDRA
CCCHHHHHHCCCCCCEEEEEEECCCCEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHH
IRLLGPTPARMGGYAEALVAQGGGLVTSEAQNALRKALALDPNDPRSAFYLALGLKQEGK
HHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC
NAEALSAFRKLAGSSPADAPWLPLVNQHIAELADSPAAVGPTGPAATGPAAPGNPTPGDI
CHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCH
AAAKEMNDGDRQSMIRGMVDSLASRLKEDPANLEGWMRLIRSYVVLDQRDRAEEALHEGL
HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCC
IAFPATGVQGKQLLALAQELGLDAGGDTE
EECCCCCCCHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLFWILVAILTAAVAAVLLLPLMRAAAPLPSRHSHDIEVYRDQLGELARDRDAGLIGSEE
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHH
AELARAEIARRMLAASAADQAAAERTPKRLLSNRLSQAFIFLCLPAIGLCLYLTTGSPGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCC
PAQPLAARLADPNGDVNILIAKAENHLALNPEDGAGWDLLAPIYMRHGRLEDAVAAYDRA
CCCHHHHHHCCCCCCEEEEEEECCCCEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHH
IRLLGPTPARMGGYAEALVAQGGGLVTSEAQNALRKALALDPNDPRSAFYLALGLKQEGK
HHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC
NAEALSAFRKLAGSSPADAPWLPLVNQHIAELADSPAAVGPTGPAATGPAAPGNPTPGDI
CHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCH
AAAKEMNDGDRQSMIRGMVDSLASRLKEDPANLEGWMRLIRSYVVLDQRDRAEEALHEGL
HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCC
IAFPATGVQGKQLLALAQELGLDAGGDTE
EECCCCCCCHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7715602; 11481430 [H]