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The map label for this gene is omp [H]

Identifier: 150395856

GI number: 150395856

Start: 677790

End: 678236

Strand: Direct

Name: omp [H]

Synonym: Smed_0632

Alternate gene names: 150395856

Gene position: 677790-678236 (Clockwise)

Preceding gene: 150395855

Following gene: 150395857

Centisome position: 17.92

GC content: 68.9

Gene sequence:

>447_bases
ATGACGCGGGCCTTCGCGTCGAGCGGCAGGATCGCAGTCGTGGCATCGAGCGTAGCCCTGAGCGGCTGTGGCACGACCTC
GTCCGGCCAAGGCGGGGCGGTTGCGGGCCTTGGCGCAGCCTCTACCCGCGTTGTGTCATCCGCGACGTATATCGAGGCCC
TGCAGGGCGGTGTCGTTTCGCGCCTCGCCGGCGTCGACCTCGGCAAGTCCGATCGGCAGCGGGCGCTTGAGGCTGAGTAT
CGTGCGCTCGAGGCGGCGCCGGGCGGACAGCCCGTCGCCTGGCAGGGGCGCGGCGTCAGCGGCTCAGTCGTCGCGGCCGC
ACCCTATCAGGTCGGGTCGCAAAATTGCCGCCAATACAGCCATACGGTCACGGTCAAGGGTCAGCAAAGCACGGCACGGG
GTGCTGCCTGCCGCAACAGTGATGGAAGCTGGACACCGCTCACCTGA

Upstream 100 bases:

>100_bases
AGAATTCGACTGACGCCGCTGTTTCGACGGATATTCCCGAGGCGTGACTGGTGACTGACAACAGGAATGAGTAGTGCGTA
TCATGAGGAATTACGCAGAG

Downstream 100 bases:

>100_bases
GCCGACGCACGTCGCATGTCGACACGGCTTGCGGCGAAACGCCTCAAATCTCCGTCATCGCCGGTTTTCGAGTTGGAATG
ACATGAACGGCATAGTATTC

Product: putative outer-membranne lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 147

Protein sequence:

>148_residues
MTRAFASSGRIAVVASSVALSGCGTTSSGQGGAVAGLGAASTRVVSSATYIEALQGGVVSRLAGVDLGKSDRQRALEAEY
RALEAAPGGQPVAWQGRGVSGSVVAAAPYQVGSQNCRQYSHTVTVKGQQSTARGAACRNSDGSWTPLT

Sequences:

>Translated_148_residues
MTRAFASSGRIAVVASSVALSGCGTTSSGQGGAVAGLGAASTRVVSSATYIEALQGGVVSRLAGVDLGKSDRQRALEAEY
RALEAAPGGQPVAWQGRGVSGSVVAAAPYQVGSQNCRQYSHTVTVKGQQSTARGAACRNSDGSWTPLT
>Mature_147_residues
TRAFASSGRIAVVASSVALSGCGTTSSGQGGAVAGLGAASTRVVSSATYIEALQGGVVSRLAGVDLGKSDRQRALEAEYR
ALEAAPGGQPVAWQGRGVSGSVVAAAPYQVGSQNCRQYSHTVTVKGQQSTARGAACRNSDGSWTPLT

Specific function: Unknown

COG id: COG4520

COG function: function code M; Surface antigen

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rickettsiale 17 kDa surface antigen family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008816
- InterPro:   IPR016364 [H]

Pfam domain/function: PF05433 Rick_17kDa_Anti [H]

EC number: NA

Molecular weight: Translated: 14790; Mature: 14658

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRAFASSGRIAVVASSVALSGCGTTSSGQGGAVAGLGAASTRVVSSATYIEALQGGVVS
CCCCCCCCCCEEEEEECEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCHHH
RLAGVDLGKSDRQRALEAEYRALEAAPGGQPVAWQGRGVSGSVVAAAPYQVGSQNCRQYS
HHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEECCCCCCCHHHHHCC
HTVTVKGQQSTARGAACRNSDGSWTPLT
CEEEEECCCCCCCCCCEECCCCCCCCCC
>Mature Secondary Structure 
TRAFASSGRIAVVASSVALSGCGTTSSGQGGAVAGLGAASTRVVSSATYIEALQGGVVS
CCCCCCCCCEEEEEECEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCHHH
RLAGVDLGKSDRQRALEAEYRALEAAPGGQPVAWQGRGVSGSVVAAAPYQVGSQNCRQYS
HHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEECCCCCCCHHHHHCC
HTVTVKGQQSTARGAACRNSDGSWTPLT
CEEEEECCCCCCCCCCEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA