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The map label for this gene is ydeS [H]

Identifier: 148824361

GI number: 148824361

Start: 3548554

End: 3549180

Strand: Reverse

Name: ydeS [H]

Synonym: TBFG_13188

Alternate gene names: 148824361

Gene position: 3549180-3548554 (Counterclockwise)

Preceding gene: 148824365

Following gene: 148824360

Centisome position: 80.22

GC content: 68.9

Gene sequence:

>627_bases
ATGAAAGCAGACCTGCCCTCCCTTGACAAGGCCCCCGGCGCCGGGCGGCCGCGTGATCCGCGCATCGACTCGGCGATCCT
GTCGGCGACGGCGGAACTGCTTGTGCAGATCGGGTATTCGAACCTCAGCTTGGCCGCGGTCGCCGAACGCGCCGGCACCA
CCAAATCGGCGTTGTACCGGCGGTGGTCGAGCAAGGCCGAACTAGTGCACGAGGCCGCGTTTCCCGCCGCGCCCACCGCG
CTGCAGGCTGCGGCCGGTGATATCGCCGCCGACATCCGAATGATGATCGCGGCCACCCGCGATGTGTTCACCACCCCGGT
GGTGCGGGCCGCGTTACCCGGTCTGGTAGCCGATATGACCGCAGACGCTGAACTCAACGCCCGGGTGCTGGCGCGTTTTG
CCGACTTATTCGCCGCGGTGCGCATGCGCCTGCGCGAGGCCGTCGACCGCGGCGAGGCGCATCCCGACGTGGACCCGGAC
CGGTTGATCGAGCTGATCGGGGGCGCCACCATGCTGCGGATGCTGCTGTACCCGGACGACATGCTGGACGACGCGTGGGT
GGACCAAACCACCGCGATCGTCGTGCGAGGGGTCCACCGCGCCGCTCCTGGCGGCAGTGTCGTCTGA

Upstream 100 bases:

>100_bases
TCGCGGCTCGAGCGCTGGAGTCGGTCGATGGCTCCGATTGCCGGTTCGTTGGCCACAAGCGCCTCCCTGGTGCGGCAATT
ACGCTACTTTAGGTAGCGTT

Downstream 100 bases:

>100_bases
CGTGCCAGTATGAACCAAGCCAGGTTGAACCAACCCCCAGGCCGCAACGGCGGCAGGCAACCGGTCGAGTGGTGTGCGTA
TGCCCGGTACTAAGCCCGGT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MKADLPSLDKAPGAGRPRDPRIDSAILSATAELLVQIGYSNLSLAAVAERAGTTKSALYRRWSSKAELVHEAAFPAAPTA
LQAAAGDIAADIRMMIAATRDVFTTPVVRAALPGLVADMTADAELNARVLARFADLFAAVRMRLREAVDRGEAHPDVDPD
RLIELIGGATMLRMLLYPDDMLDDAWVDQTTAIVVRGVHRAAPGGSVV

Sequences:

>Translated_208_residues
MKADLPSLDKAPGAGRPRDPRIDSAILSATAELLVQIGYSNLSLAAVAERAGTTKSALYRRWSSKAELVHEAAFPAAPTA
LQAAAGDIAADIRMMIAATRDVFTTPVVRAALPGLVADMTADAELNARVLARFADLFAAVRMRLREAVDRGEAHPDVDPD
RLIELIGGATMLRMLLYPDDMLDDAWVDQTTAIVVRGVHRAAPGGSVV
>Mature_208_residues
MKADLPSLDKAPGAGRPRDPRIDSAILSATAELLVQIGYSNLSLAAVAERAGTTKSALYRRWSSKAELVHEAAFPAAPTA
LQAAAGDIAADIRMMIAATRDVFTTPVVRAALPGLVADMTADAELNARVLARFADLFAAVRMRLREAVDRGEAHPDVDPD
RLIELIGGATMLRMLLYPDDMLDDAWVDQTTAIVVRGVHRAAPGGSVV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22096; Mature: 22096

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKADLPSLDKAPGAGRPRDPRIDSAILSATAELLVQIGYSNLSLAAVAERAGTTKSALYR
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHH
RWSSKAELVHEAAFPAAPTALQAAAGDIAADIRMMIAATRDVFTTPVVRAALPGLVADMT
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
ADAELNARVLARFADLFAAVRMRLREAVDRGEAHPDVDPDRLIELIGGATMLRMLLYPDD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCH
MLDDAWVDQTTAIVVRGVHRAAPGGSVV
HHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKADLPSLDKAPGAGRPRDPRIDSAILSATAELLVQIGYSNLSLAAVAERAGTTKSALYR
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHH
RWSSKAELVHEAAFPAAPTALQAAAGDIAADIRMMIAATRDVFTTPVVRAALPGLVADMT
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
ADAELNARVLARFADLFAAVRMRLREAVDRGEAHPDVDPDRLIELIGGATMLRMLLYPDD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCH
MLDDAWVDQTTAIVVRGVHRAAPGGSVV
HHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]