Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
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Accession | NC_009524 |
Length | 2,978,976 |
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The map label for this gene is 148652678
Identifier: 148652678
GI number: 148652678
Start: 1029248
End: 1030366
Strand: Direct
Name: 148652678
Synonym: PsycPRwf_0869
Alternate gene names: NA
Gene position: 1029248-1030366 (Clockwise)
Preceding gene: 148652677
Following gene: 148652679
Centisome position: 34.55
GC content: 45.58
Gene sequence:
>1119_bases ATGGGTACAGATAGACAAGTAACAGCAGTAGCACATTCAGGAGTAACAAAATACTCATTACTGAGTGCAGCTGTGATTGG TGCATTGGCATTAACTGGATGTAATAAGCCTGCAGATCAAACTCAAACTACTGAAACCGAAAACAGCGCAGAAGTGGCAC CCACTGCTGACGCCAAAACTGTAACTATTTACTCCTCACGCAATGAGCAGCTTATCCAGCCTTTATTAGATGAGTTTACT AAAGAAACGGGTATTCCCGTAGAGCTTGTGACTGATGACAGCGGCCCACTTATGGCGCGTTTGCAAGCAGAAAGCACCAA TACCCCTGCCGATATGCTATTGACTGTAGATGCCGGTAACTTATGGCAAGCTGCGCAGCAAGGCCTACTACAGCCTCTAA ACTCTGAAGTTGTGAACAGCAATGTCCCTGCAAAATACCACTCAGTAGATGACTTATGGACTGGTCTCTCCCTGCGTGCA CGTACTATTTTTTATGATCCAGCCAAAGTAAACCCAAGCGACTTATCTACTTATGCAGATCTTGCTGATCCAAAATGGAA AGGCAAATTGTGCCTTCGCACCTCCAAAAAAGTATATAACCAGTCTTTAGTCGCCAGCATGATTGAGCATTTAGGCGCTC AAAAGACCGAAGAAATTGTGAAAGGCTGGGTGGCAAACTTAGCCGCCCCTGTGTTTAGTAATGATACCAAGCTGTTAGAA GCCATTGCCGCCGGTCAATGTGAAGTTGGTATTGCAAATAGCTACTACTATGGCCGTATCTTGGATGAAAACCCAAGCTT CCCTGTAAAACTATTTTGGGCCAACCAAGGGGAAGGCGCTGAAGCAACTGGTACACATGTGAACGTATCGGGTGCAGGTA TTATCAAATCCTCTGATAACGTAGATGGCGCTCGTAAGCTGATTGAGTGGTTATCATCAGATACCGCCCAAGGCAAATAC GCCAGCAGTGATAAAGAATTCCCAGTAAAAGAAGGGATTGATGAGTCAGACATGTTGCGCTCATGGGGCAGCTTCAAGCA AGACGACATCAATGTGAGCATCTTTGGCCAGCGTCAAGCTGAAGCGGTTCAATTAATGGATCGTGCAGGATACGAATAA
Upstream 100 bases:
>100_bases TGTTACTATTTGTATTAAGATGCCAAACTGTGTTTAATTACAGGATTGTAACAAACACAGTTTAGACCAAACTAAAAATC AATTCTCTAAAGAGGCCAAA
Downstream 100 bases:
>100_bases CCTATTATTGACATTAAAATAGTAGCAAGATTGTGACACTGCGCTAGAGAGAAAACCAAAATCAGTGCTAAAGTCAAAGG GCAGTGTTCACCGCTTGTCC
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 372; Mature: 371
Protein sequence:
>372_residues MGTDRQVTAVAHSGVTKYSLLSAAVIGALALTGCNKPADQTQTTETENSAEVAPTADAKTVTIYSSRNEQLIQPLLDEFT KETGIPVELVTDDSGPLMARLQAESTNTPADMLLTVDAGNLWQAAQQGLLQPLNSEVVNSNVPAKYHSVDDLWTGLSLRA RTIFYDPAKVNPSDLSTYADLADPKWKGKLCLRTSKKVYNQSLVASMIEHLGAQKTEEIVKGWVANLAAPVFSNDTKLLE AIAAGQCEVGIANSYYYGRILDENPSFPVKLFWANQGEGAEATGTHVNVSGAGIIKSSDNVDGARKLIEWLSSDTAQGKY ASSDKEFPVKEGIDESDMLRSWGSFKQDDINVSIFGQRQAEAVQLMDRAGYE
Sequences:
>Translated_372_residues MGTDRQVTAVAHSGVTKYSLLSAAVIGALALTGCNKPADQTQTTETENSAEVAPTADAKTVTIYSSRNEQLIQPLLDEFT KETGIPVELVTDDSGPLMARLQAESTNTPADMLLTVDAGNLWQAAQQGLLQPLNSEVVNSNVPAKYHSVDDLWTGLSLRA RTIFYDPAKVNPSDLSTYADLADPKWKGKLCLRTSKKVYNQSLVASMIEHLGAQKTEEIVKGWVANLAAPVFSNDTKLLE AIAAGQCEVGIANSYYYGRILDENPSFPVKLFWANQGEGAEATGTHVNVSGAGIIKSSDNVDGARKLIEWLSSDTAQGKY ASSDKEFPVKEGIDESDMLRSWGSFKQDDINVSIFGQRQAEAVQLMDRAGYE >Mature_371_residues GTDRQVTAVAHSGVTKYSLLSAAVIGALALTGCNKPADQTQTTETENSAEVAPTADAKTVTIYSSRNEQLIQPLLDEFTK ETGIPVELVTDDSGPLMARLQAESTNTPADMLLTVDAGNLWQAAQQGLLQPLNSEVVNSNVPAKYHSVDDLWTGLSLRAR TIFYDPAKVNPSDLSTYADLADPKWKGKLCLRTSKKVYNQSLVASMIEHLGAQKTEEIVKGWVANLAAPVFSNDTKLLEA IAAGQCEVGIANSYYYGRILDENPSFPVKLFWANQGEGAEATGTHVNVSGAGIIKSSDNVDGARKLIEWLSSDTAQGKYA SSDKEFPVKEGIDESDMLRSWGSFKQDDINVSIFGQRQAEAVQLMDRAGYE
Specific function: Unknown
COG id: COG1840
COG function: function code P; ABC-type Fe3+ transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 1 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006059 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 40201; Mature: 40070
Theoretical pI: Translated: 4.48; Mature: 4.48
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGTDRQVTAVAHSGVTKYSLLSAAVIGALALTGCNKPADQTQTTETENSAEVAPTADAKT CCCCCEEEEHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEE VTIYSSRNEQLIQPLLDEFTKETGIPVELVTDDSGPLMARLQAESTNTPADMLLTVDAGN EEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCH LWQAAQQGLLQPLNSEVVNSNVPAKYHSVDDLWTGLSLRARTIFYDPAKVNPSDLSTYAD HHHHHHHHHHHHHHHHHHCCCCCCHHCCHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHH LADPKWKGKLCLRTSKKVYNQSLVASMIEHLGAQKTEEIVKGWVANLAAPVFSNDTKLLE HCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHH AIAAGQCEVGIANSYYYGRILDENPSFPVKLFWANQGEGAEATGTHVNVSGAGIIKSSDN HHHCCCCEEEECCCEEEEEEECCCCCCCEEEEECCCCCCCCCCCCEEEECCCEEEECCCC VDGARKLIEWLSSDTAQGKYASSDKEFPVKEGIDESDMLRSWGSFKQDDINVSIFGQRQA CHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHCCCCCCCCEEEEECCCHH EAVQLMDRAGYE HHHHHHHHCCCC >Mature Secondary Structure GTDRQVTAVAHSGVTKYSLLSAAVIGALALTGCNKPADQTQTTETENSAEVAPTADAKT CCCCEEEEHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEE VTIYSSRNEQLIQPLLDEFTKETGIPVELVTDDSGPLMARLQAESTNTPADMLLTVDAGN EEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCH LWQAAQQGLLQPLNSEVVNSNVPAKYHSVDDLWTGLSLRARTIFYDPAKVNPSDLSTYAD HHHHHHHHHHHHHHHHHHCCCCCCHHCCHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHH LADPKWKGKLCLRTSKKVYNQSLVASMIEHLGAQKTEEIVKGWVANLAAPVFSNDTKLLE HCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHH AIAAGQCEVGIANSYYYGRILDENPSFPVKLFWANQGEGAEATGTHVNVSGAGIIKSSDN HHHCCCCEEEECCCEEEEEEECCCCCCCEEEEECCCCCCCCCCCCEEEECCCEEEECCCC VDGARKLIEWLSSDTAQGKYASSDKEFPVKEGIDESDMLRSWGSFKQDDINVSIFGQRQA CHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHCCCCCCCCEEEEECCCHH EAVQLMDRAGYE HHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]