Definition Psychrobacter sp. PRwf-1 chromosome, complete genome.
Accession NC_009524
Length 2,978,976

Click here to switch to the map view.

The map label for this gene is 148652678

Identifier: 148652678

GI number: 148652678

Start: 1029248

End: 1030366

Strand: Direct

Name: 148652678

Synonym: PsycPRwf_0869

Alternate gene names: NA

Gene position: 1029248-1030366 (Clockwise)

Preceding gene: 148652677

Following gene: 148652679

Centisome position: 34.55

GC content: 45.58

Gene sequence:

>1119_bases
ATGGGTACAGATAGACAAGTAACAGCAGTAGCACATTCAGGAGTAACAAAATACTCATTACTGAGTGCAGCTGTGATTGG
TGCATTGGCATTAACTGGATGTAATAAGCCTGCAGATCAAACTCAAACTACTGAAACCGAAAACAGCGCAGAAGTGGCAC
CCACTGCTGACGCCAAAACTGTAACTATTTACTCCTCACGCAATGAGCAGCTTATCCAGCCTTTATTAGATGAGTTTACT
AAAGAAACGGGTATTCCCGTAGAGCTTGTGACTGATGACAGCGGCCCACTTATGGCGCGTTTGCAAGCAGAAAGCACCAA
TACCCCTGCCGATATGCTATTGACTGTAGATGCCGGTAACTTATGGCAAGCTGCGCAGCAAGGCCTACTACAGCCTCTAA
ACTCTGAAGTTGTGAACAGCAATGTCCCTGCAAAATACCACTCAGTAGATGACTTATGGACTGGTCTCTCCCTGCGTGCA
CGTACTATTTTTTATGATCCAGCCAAAGTAAACCCAAGCGACTTATCTACTTATGCAGATCTTGCTGATCCAAAATGGAA
AGGCAAATTGTGCCTTCGCACCTCCAAAAAAGTATATAACCAGTCTTTAGTCGCCAGCATGATTGAGCATTTAGGCGCTC
AAAAGACCGAAGAAATTGTGAAAGGCTGGGTGGCAAACTTAGCCGCCCCTGTGTTTAGTAATGATACCAAGCTGTTAGAA
GCCATTGCCGCCGGTCAATGTGAAGTTGGTATTGCAAATAGCTACTACTATGGCCGTATCTTGGATGAAAACCCAAGCTT
CCCTGTAAAACTATTTTGGGCCAACCAAGGGGAAGGCGCTGAAGCAACTGGTACACATGTGAACGTATCGGGTGCAGGTA
TTATCAAATCCTCTGATAACGTAGATGGCGCTCGTAAGCTGATTGAGTGGTTATCATCAGATACCGCCCAAGGCAAATAC
GCCAGCAGTGATAAAGAATTCCCAGTAAAAGAAGGGATTGATGAGTCAGACATGTTGCGCTCATGGGGCAGCTTCAAGCA
AGACGACATCAATGTGAGCATCTTTGGCCAGCGTCAAGCTGAAGCGGTTCAATTAATGGATCGTGCAGGATACGAATAA

Upstream 100 bases:

>100_bases
TGTTACTATTTGTATTAAGATGCCAAACTGTGTTTAATTACAGGATTGTAACAAACACAGTTTAGACCAAACTAAAAATC
AATTCTCTAAAGAGGCCAAA

Downstream 100 bases:

>100_bases
CCTATTATTGACATTAAAATAGTAGCAAGATTGTGACACTGCGCTAGAGAGAAAACCAAAATCAGTGCTAAAGTCAAAGG
GCAGTGTTCACCGCTTGTCC

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 371

Protein sequence:

>372_residues
MGTDRQVTAVAHSGVTKYSLLSAAVIGALALTGCNKPADQTQTTETENSAEVAPTADAKTVTIYSSRNEQLIQPLLDEFT
KETGIPVELVTDDSGPLMARLQAESTNTPADMLLTVDAGNLWQAAQQGLLQPLNSEVVNSNVPAKYHSVDDLWTGLSLRA
RTIFYDPAKVNPSDLSTYADLADPKWKGKLCLRTSKKVYNQSLVASMIEHLGAQKTEEIVKGWVANLAAPVFSNDTKLLE
AIAAGQCEVGIANSYYYGRILDENPSFPVKLFWANQGEGAEATGTHVNVSGAGIIKSSDNVDGARKLIEWLSSDTAQGKY
ASSDKEFPVKEGIDESDMLRSWGSFKQDDINVSIFGQRQAEAVQLMDRAGYE

Sequences:

>Translated_372_residues
MGTDRQVTAVAHSGVTKYSLLSAAVIGALALTGCNKPADQTQTTETENSAEVAPTADAKTVTIYSSRNEQLIQPLLDEFT
KETGIPVELVTDDSGPLMARLQAESTNTPADMLLTVDAGNLWQAAQQGLLQPLNSEVVNSNVPAKYHSVDDLWTGLSLRA
RTIFYDPAKVNPSDLSTYADLADPKWKGKLCLRTSKKVYNQSLVASMIEHLGAQKTEEIVKGWVANLAAPVFSNDTKLLE
AIAAGQCEVGIANSYYYGRILDENPSFPVKLFWANQGEGAEATGTHVNVSGAGIIKSSDNVDGARKLIEWLSSDTAQGKY
ASSDKEFPVKEGIDESDMLRSWGSFKQDDINVSIFGQRQAEAVQLMDRAGYE
>Mature_371_residues
GTDRQVTAVAHSGVTKYSLLSAAVIGALALTGCNKPADQTQTTETENSAEVAPTADAKTVTIYSSRNEQLIQPLLDEFTK
ETGIPVELVTDDSGPLMARLQAESTNTPADMLLTVDAGNLWQAAQQGLLQPLNSEVVNSNVPAKYHSVDDLWTGLSLRAR
TIFYDPAKVNPSDLSTYADLADPKWKGKLCLRTSKKVYNQSLVASMIEHLGAQKTEEIVKGWVANLAAPVFSNDTKLLEA
IAAGQCEVGIANSYYYGRILDENPSFPVKLFWANQGEGAEATGTHVNVSGAGIIKSSDNVDGARKLIEWLSSDTAQGKYA
SSDKEFPVKEGIDESDMLRSWGSFKQDDINVSIFGQRQAEAVQLMDRAGYE

Specific function: Unknown

COG id: COG1840

COG function: function code P; ABC-type Fe3+ transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 40201; Mature: 40070

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTDRQVTAVAHSGVTKYSLLSAAVIGALALTGCNKPADQTQTTETENSAEVAPTADAKT
CCCCCEEEEHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEE
VTIYSSRNEQLIQPLLDEFTKETGIPVELVTDDSGPLMARLQAESTNTPADMLLTVDAGN
EEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCH
LWQAAQQGLLQPLNSEVVNSNVPAKYHSVDDLWTGLSLRARTIFYDPAKVNPSDLSTYAD
HHHHHHHHHHHHHHHHHHCCCCCCHHCCHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHH
LADPKWKGKLCLRTSKKVYNQSLVASMIEHLGAQKTEEIVKGWVANLAAPVFSNDTKLLE
HCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHH
AIAAGQCEVGIANSYYYGRILDENPSFPVKLFWANQGEGAEATGTHVNVSGAGIIKSSDN
HHHCCCCEEEECCCEEEEEEECCCCCCCEEEEECCCCCCCCCCCCEEEECCCEEEECCCC
VDGARKLIEWLSSDTAQGKYASSDKEFPVKEGIDESDMLRSWGSFKQDDINVSIFGQRQA
CHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHCCCCCCCCEEEEECCCHH
EAVQLMDRAGYE
HHHHHHHHCCCC
>Mature Secondary Structure 
GTDRQVTAVAHSGVTKYSLLSAAVIGALALTGCNKPADQTQTTETENSAEVAPTADAKT
CCCCEEEEHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEE
VTIYSSRNEQLIQPLLDEFTKETGIPVELVTDDSGPLMARLQAESTNTPADMLLTVDAGN
EEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCH
LWQAAQQGLLQPLNSEVVNSNVPAKYHSVDDLWTGLSLRARTIFYDPAKVNPSDLSTYAD
HHHHHHHHHHHHHHHHHHCCCCCCHHCCHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHH
LADPKWKGKLCLRTSKKVYNQSLVASMIEHLGAQKTEEIVKGWVANLAAPVFSNDTKLLE
HCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHH
AIAAGQCEVGIANSYYYGRILDENPSFPVKLFWANQGEGAEATGTHVNVSGAGIIKSSDN
HHHCCCCEEEECCCEEEEEEECCCCCCCEEEEECCCCCCCCCCCCEEEECCCEEEECCCC
VDGARKLIEWLSSDTAQGKYASSDKEFPVKEGIDESDMLRSWGSFKQDDINVSIFGQRQA
CHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHCCCCCCCCEEEEECCCHH
EAVQLMDRAGYE
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]