Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
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Accession | NC_009524 |
Length | 2,978,976 |
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The map label for this gene is 148652677
Identifier: 148652677
GI number: 148652677
Start: 1027804
End: 1029096
Strand: Direct
Name: 148652677
Synonym: PsycPRwf_0868
Alternate gene names: NA
Gene position: 1027804-1029096 (Clockwise)
Preceding gene: 148652676
Following gene: 148652678
Centisome position: 34.5
GC content: 50.27
Gene sequence:
>1293_bases ATGTTAAACCCTGTTCGTGCCAGCCTTCCTATTTTTGCCAAAGCAACCTTGGCGCTGATGGTAGCTGCGGTCAGCCTAAC TGGGCTAGTAGGGTGCTCAAGCCGCTCAGACACAGATACTGCTCAAGATAAAAAAGAGCAGCCACTGATGAGCCAAGAGC GCTTTCAGGTAGGTACCGATCTTGATATAGCCATGCTCAAGCCGCTGAGCGATGCTTATAAACAAGAGACGGGCATTAGT ATCGAGTGGGTGCTTGTGGATCGGCAAGTATTCACCATACATTTTGATGAAGAGCCGCCGTTACACTTCGATGTGCAGCT GCCCAAAGGGGTGGATATGCTAATGATGCACAGCGCTTATAGCTTAGCCGATGCCAATGCCAGTCATGTGCTGCAACCGG TGGGGTCAGAGAAGCTCACCACCCGAGTGCCGGCGCAATATAAAGACCCCCAAGGCCATTGGTTTGGGGTGGCCAAATAT GCAAGAACCTTGGTGTATAACCGCAATAAGGTGAACGAGCCTGAGCTCATTAACTACGCTGGACTTGCCGCAAAAAAATG GTACGGCCGCTTGTGCATGACCGATATTTATAGCCCAGAAAACCAAGCCATTGCTAAAATGATGATGTCGTATCGGGGCA CGAAGCTGACCCCAGAGATTTTGGCCAATTGGCAAACCAATATGGGCCGCCCCTCAGCCAGTAATGAGGACATCTTAAAA AATATAGAGCAAGGCCGCTGTGATGTGGGTATTGTCGACAGCGATGTGTTCTGGCACCATGCCAAAACCCATCCCGACAC ACCCATTCGCTTAATGTGGGCCAATCAAATTAACCGCGGCACCCTGACTAATACCATTAGTATCGGTATGATTGATGATG GTGAAGAGGTGGGTCAGGCATTGAGATTTATGGAGTGGTTGGTCAGTGACCGCGGGCAAGCGTTATTGGCTTTTTATACC AGTGCCTTTCCTGTGGTGGATATCAAGGATGACAGTATAAATATGCAGGCGCTGCGTCCTGAGTGGACTGAGTTTGAACC AGACCTCACGGCGTTGCCGGACATTATTGCCAATCACAGCAAAATTGAGCCGCTTAACATGGAGCCTGAGCCGGTGCTTG AAGATAAAGCCGGCGCTGCTGCTAGCACCAAAGACAATAGCGAGGCCGAAGCAGTGGTACAAAACGATTTAACCCAGGCT TCTAAACAGGCTGCCTTACAGCGTACACAGGCTGCCCAATCTGAGGCAGCAGGGGGTACTACGCCGCCTATAGTGATGCA AAATGTAGAGTAA
Upstream 100 bases:
>100_bases AATAGATAAACAGGTAAGCTGCTAGGCCTATTACAGGTTAAGTATTTTAACCTTGTTTTAAATTTTCACCCCACTGTCCA AAAAATCATAGGTCTTAGCC
Downstream 100 bases:
>100_bases AGCGGCTCAATGGGATAAGGTTTTAAATGAGATTGGTTAGTTATTGATAATTGTTACTATTTGTATTAAGATGCCAAACT GTGTTTAATTACAGGATTGT
Product: Fe3+ ABC transporter periplasmic component-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 430; Mature: 430
Protein sequence:
>430_residues MLNPVRASLPIFAKATLALMVAAVSLTGLVGCSSRSDTDTAQDKKEQPLMSQERFQVGTDLDIAMLKPLSDAYKQETGIS IEWVLVDRQVFTIHFDEEPPLHFDVQLPKGVDMLMMHSAYSLADANASHVLQPVGSEKLTTRVPAQYKDPQGHWFGVAKY ARTLVYNRNKVNEPELINYAGLAAKKWYGRLCMTDIYSPENQAIAKMMMSYRGTKLTPEILANWQTNMGRPSASNEDILK NIEQGRCDVGIVDSDVFWHHAKTHPDTPIRLMWANQINRGTLTNTISIGMIDDGEEVGQALRFMEWLVSDRGQALLAFYT SAFPVVDIKDDSINMQALRPEWTEFEPDLTALPDIIANHSKIEPLNMEPEPVLEDKAGAAASTKDNSEAEAVVQNDLTQA SKQAALQRTQAAQSEAAGGTTPPIVMQNVE
Sequences:
>Translated_430_residues MLNPVRASLPIFAKATLALMVAAVSLTGLVGCSSRSDTDTAQDKKEQPLMSQERFQVGTDLDIAMLKPLSDAYKQETGIS IEWVLVDRQVFTIHFDEEPPLHFDVQLPKGVDMLMMHSAYSLADANASHVLQPVGSEKLTTRVPAQYKDPQGHWFGVAKY ARTLVYNRNKVNEPELINYAGLAAKKWYGRLCMTDIYSPENQAIAKMMMSYRGTKLTPEILANWQTNMGRPSASNEDILK NIEQGRCDVGIVDSDVFWHHAKTHPDTPIRLMWANQINRGTLTNTISIGMIDDGEEVGQALRFMEWLVSDRGQALLAFYT SAFPVVDIKDDSINMQALRPEWTEFEPDLTALPDIIANHSKIEPLNMEPEPVLEDKAGAAASTKDNSEAEAVVQNDLTQA SKQAALQRTQAAQSEAAGGTTPPIVMQNVE >Mature_430_residues MLNPVRASLPIFAKATLALMVAAVSLTGLVGCSSRSDTDTAQDKKEQPLMSQERFQVGTDLDIAMLKPLSDAYKQETGIS IEWVLVDRQVFTIHFDEEPPLHFDVQLPKGVDMLMMHSAYSLADANASHVLQPVGSEKLTTRVPAQYKDPQGHWFGVAKY ARTLVYNRNKVNEPELINYAGLAAKKWYGRLCMTDIYSPENQAIAKMMMSYRGTKLTPEILANWQTNMGRPSASNEDILK NIEQGRCDVGIVDSDVFWHHAKTHPDTPIRLMWANQINRGTLTNTISIGMIDDGEEVGQALRFMEWLVSDRGQALLAFYT SAFPVVDIKDDSINMQALRPEWTEFEPDLTALPDIIANHSKIEPLNMEPEPVLEDKAGAAASTKDNSEAEAVVQNDLTQA SKQAALQRTQAAQSEAAGGTTPPIVMQNVE
Specific function: Unknown
COG id: COG1840
COG function: function code P; ABC-type Fe3+ transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 1 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006059 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 47633; Mature: 47633
Theoretical pI: Translated: 4.72; Mature: 4.72
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLNPVRASLPIFAKATLALMVAAVSLTGLVGCSSRSDTDTAQDKKEQPLMSQERFQVGTD CCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHCCCHHHHHHCCCCC LDIAMLKPLSDAYKQETGISIEWVLVDRQVFTIHFDEEPPLHFDVQLPKGVDMLMMHSAY CCHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHH SLADANASHVLQPVGSEKLTTRVPAQYKDPQGHWFGVAKYARTLVYNRNKVNEPELINYA HHCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCEECHH GLAAKKWYGRLCMTDIYSPENQAIAKMMMSYRGTKLTPEILANWQTNMGRPSASNEDILK CHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHCCHHCCCCCCCCCHHHHH NIEQGRCDVGIVDSDVFWHHAKTHPDTPIRLMWANQINRGTLTNTISIGMIDDGEEVGQA HHHHCCCCEEEECCCCEEEECCCCCCCCEEEEEECCCCCCCEEEEEEEEEECCHHHHHHH LRFMEWLVSDRGQALLAFYTSAFPVVDIKDDSINMQALRPEWTEFEPDLTALPDIIANHS HHHHHHHHCCCCCEEEEEECCCCEEEEECCCCCCEEEECCCCCCCCCCHHHHHHHHCCCC KIEPLNMEPEPVLEDKAGAAASTKDNSEAEAVVQNDLTQASKQAALQRTQAAQSEAAGGT CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC TPPIVMQNVE CCCEEEECCC >Mature Secondary Structure MLNPVRASLPIFAKATLALMVAAVSLTGLVGCSSRSDTDTAQDKKEQPLMSQERFQVGTD CCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHCCCHHHHHHCCCCC LDIAMLKPLSDAYKQETGISIEWVLVDRQVFTIHFDEEPPLHFDVQLPKGVDMLMMHSAY CCHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHH SLADANASHVLQPVGSEKLTTRVPAQYKDPQGHWFGVAKYARTLVYNRNKVNEPELINYA HHCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCEECHH GLAAKKWYGRLCMTDIYSPENQAIAKMMMSYRGTKLTPEILANWQTNMGRPSASNEDILK CHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHCCHHCCCCCCCCCHHHHH NIEQGRCDVGIVDSDVFWHHAKTHPDTPIRLMWANQINRGTLTNTISIGMIDDGEEVGQA HHHHCCCCEEEECCCCEEEECCCCCCCCEEEEEECCCCCCCEEEEEEEEEECCHHHHHHH LRFMEWLVSDRGQALLAFYTSAFPVVDIKDDSINMQALRPEWTEFEPDLTALPDIIANHS HHHHHHHHCCCCCEEEEEECCCCEEEEECCCCCCEEEECCCCCCCCCCHHHHHHHHCCCC KIEPLNMEPEPVLEDKAGAAASTKDNSEAEAVVQNDLTQASKQAALQRTQAAQSEAAGGT CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC TPPIVMQNVE CCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]