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The map label for this gene is rsmE [H]

Identifier: 148652676

GI number: 148652676

Start: 1026966

End: 1027679

Strand: Direct

Name: rsmE [H]

Synonym: PsycPRwf_0867

Alternate gene names: 148652676

Gene position: 1026966-1027679 (Clockwise)

Preceding gene: 148652675

Following gene: 148652677

Centisome position: 34.47

GC content: 48.88

Gene sequence:

>714_bases
ATGAACCTAATTTTATTAGATCAAGCGGAGCCATCTAGCGCTCAGACTGTACTTTGTGATCCGGCTCAAATTCAGCACAT
ACGCCAAGTGCTACAGCTTGGTGTTGGTGATCACTTAAAGGTGGGGCAAAAGCACGGAAATATAGGGACGGCTGTCATTA
GCGAGATGCGCTCTGATCAGATAATATTGACTGATATGGTGTTAACGACTGCGCCGCCGGCTAAGCTGAATTTGACTGTC
ATACTGGCGCTACCTCGGCCCAAAGTCTTGCGCCGCCTGATTATGGATATGACGGCTATTGGTGTGCGAGATATTGTGCT
GGTAAACAGCTATCGCACCGATAAAAGTTACTGGCAAAGCCCGATGTTAACTCGCCTAGATGAGTTTGTTCACGAGGGAC
TGCAGCAAGGGATGGACACGGTGCCACCCAATATTTATCTAAAAAAACGCTTTAAACCCTTTGTCGAAGACGAGCTGAGC
CTTTGGGCACAAGCGCAGCAGGCAGTGGTGGCCCATCCTTATGCGGCGACAAGCTTTAGCGACTGGAGTGACCGCAATGG
CTTGCCACAAATTTTGTGCATAGGTGCAGAAGGTGGCTGGATTGAATATGAAATTGAGCTGCTGCACAATAATGGCTGTC
ATAGCGTAAACTTAGGCGATCGCATCTTGCGTACTGAGGCAGCGGTCAATGCGTTATGTGGCCGCTACTTCTAA

Upstream 100 bases:

>100_bases
CCTTATCTGCTAAGCCAGATCCTAAACAAGAGCCGCTGGACCTTGATTACTTTAAAGTACGTACCCGCAGCGATAGCAGC
GATATGGACAGTGGCGAGCT

Downstream 100 bases:

>100_bases
AGCCGTTGTCGCACATATATTTTTAATAGATAAACAGGTAAGCTGCTAGGCCTATTACAGGTTAAGTATTTTAACCTTGT
TTTAAATTTTCACCCCACTG

Product: 16S ribosomal RNA methyltransferase RsmE

Products: NA

Alternate protein names: 16S rRNA m3U1498 methyltransferase [H]

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MNLILLDQAEPSSAQTVLCDPAQIQHIRQVLQLGVGDHLKVGQKHGNIGTAVISEMRSDQIILTDMVLTTAPPAKLNLTV
ILALPRPKVLRRLIMDMTAIGVRDIVLVNSYRTDKSYWQSPMLTRLDEFVHEGLQQGMDTVPPNIYLKKRFKPFVEDELS
LWAQAQQAVVAHPYAATSFSDWSDRNGLPQILCIGAEGGWIEYEIELLHNNGCHSVNLGDRILRTEAAVNALCGRYF

Sequences:

>Translated_237_residues
MNLILLDQAEPSSAQTVLCDPAQIQHIRQVLQLGVGDHLKVGQKHGNIGTAVISEMRSDQIILTDMVLTTAPPAKLNLTV
ILALPRPKVLRRLIMDMTAIGVRDIVLVNSYRTDKSYWQSPMLTRLDEFVHEGLQQGMDTVPPNIYLKKRFKPFVEDELS
LWAQAQQAVVAHPYAATSFSDWSDRNGLPQILCIGAEGGWIEYEIELLHNNGCHSVNLGDRILRTEAAVNALCGRYF
>Mature_237_residues
MNLILLDQAEPSSAQTVLCDPAQIQHIRQVLQLGVGDHLKVGQKHGNIGTAVISEMRSDQIILTDMVLTTAPPAKLNLTV
ILALPRPKVLRRLIMDMTAIGVRDIVLVNSYRTDKSYWQSPMLTRLDEFVHEGLQQGMDTVPPNIYLKKRFKPFVEDELS
LWAQAQQAVVAHPYAATSFSDWSDRNGLPQILCIGAEGGWIEYEIELLHNNGCHSVNLGDRILRTEAAVNALCGRYF

Specific function: Specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [H]

COG id: COG1385

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase RsmE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006700 [H]

Pfam domain/function: PF04452 Methyltrans_RNA [H]

EC number: =2.1.1.193 [H]

Molecular weight: Translated: 26468; Mature: 26468

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLILLDQAEPSSAQTVLCDPAQIQHIRQVLQLGVGDHLKVGQKHGNIGTAVISEMRSDQ
CCEEEEECCCCCCCCEEEECHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHCCCC
IILTDMVLTTAPPAKLNLTVILALPRPKVLRRLIMDMTAIGVRDIVLVNSYRTDKSYWQS
EEEEEEEECCCCCCEEEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHCC
PMLTRLDEFVHEGLQQGMDTVPPNIYLKKRFKPFVEDELSLWAQAQQAVVAHPYAATSFS
HHHHHHHHHHHHHHHCCHHCCCCCEEEHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
DWSDRNGLPQILCIGAEGGWIEYEIELLHNNGCHSVNLGDRILRTEAAVNALCGRYF
CCCCCCCCCEEEEECCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNLILLDQAEPSSAQTVLCDPAQIQHIRQVLQLGVGDHLKVGQKHGNIGTAVISEMRSDQ
CCEEEEECCCCCCCCEEEECHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHCCCC
IILTDMVLTTAPPAKLNLTVILALPRPKVLRRLIMDMTAIGVRDIVLVNSYRTDKSYWQS
EEEEEEEECCCCCCEEEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHCC
PMLTRLDEFVHEGLQQGMDTVPPNIYLKKRFKPFVEDELSLWAQAQQAVVAHPYAATSFS
HHHHHHHHHHHHHHHCCHHCCCCCEEEHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
DWSDRNGLPQILCIGAEGGWIEYEIELLHNNGCHSVNLGDRILRTEAAVNALCGRYF
CCCCCCCCCEEEEECCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9665876 [H]