| Definition | Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence. |
|---|---|
| Accession | NC_009507 |
| Length | 310,228 |
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The map label for this gene is yhxC [H]
Identifier: 148550727
GI number: 148550727
Start: 191600
End: 192451
Strand: Reverse
Name: yhxC [H]
Synonym: Swit_5291
Alternate gene names: 148550727
Gene position: 192451-191600 (Counterclockwise)
Preceding gene: 148550729
Following gene: 148550722
Centisome position: 62.04
GC content: 63.38
Gene sequence:
>852_bases ATGAGCGATACCCAGGGGATGATTCACGAAGATGCGCTTCCGGGTCACGAGAGCGGTCTCGATCCGCGGCCAGAGTGGCA ACCGCGCTACAAGGGTTCCGATCGCCTCGCGGGCAAGGTCGCGATCATAACCGGTGCTGACAGCGGGATCGGCCGGGCGG TGGCGGCTCTCTATGCCCGGGAAGGCGCCGACATCGCGATCGCTTATCTGTGCGAAGATGACGACGCCGCCGAGACGAAG CGCATCGTCGAGGCTGAAGGCCGCCAGGCGATCACCATCCGAGGCGATATCGGAGAAAAGGATACTTCGGAGCGGATCGT CGCCGAGACGCTCAGCGCGTTCGGCAAAATCGACATCCTGGTCAACAATGCCGGCGAGCAGCATCCCGACAAGGACATCA CCGACATTACCGAGGAACAGCTACGGCGCACGTTCCAGACCAACATCTTCGGGATGTTTTTCCTCGTCCAGGCGGCGCGG CCGCATCTCAAGGAGGGCGCGGCCATCATCAACTGCACCTCGGTCACCATGTACCAGGGTTCAAAGGAGCTGCTCGACTA CAGTTCAACCAAGGGCGCCATCACCGCCTTCACCCGCTCGCTGTCCGAGAACCTCGTCGGCGACGGCATTCGCGTCAATG CGGTGGCGCCGGGACCAATCTGGACCCCGCTCAACCCCTGCGGCGGCGCCAGCCCGGAGAAGCTCGAGCATTTTGGCGAG AACACCCCGATGGGCCGGCCCGGACAGCCCAACGAGGTCGCCCCCGCCTTCCTGTTCCTCGCCTGCGACGACTCCAGCTA CATGTCAGGGCAAGTCCTGCATCCCAACGGCGGCACGATCGTGAACGGTTAA
Upstream 100 bases:
>100_bases CCATCCTGTACCGGCGCCTGGGCTCCTAATGTTTCGCTCCGTCGCCAAGGCGAAGAACCGATCCGCGGTGGGCGAGTTCT CTTGTGAGAAGGAGATGTCC
Downstream 100 bases:
>100_bases GGCAAACGCTGGAACCGAACTCAAGCGGTTTCAGGATAGACACCTGGCCCATGCGCCCAAGGCCTAGAGAGTGACGATAC CGCCTGCTCGAAGGCTGCGC
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: ORFX [H]
Number of amino acids: Translated: 283; Mature: 282
Protein sequence:
>283_residues MSDTQGMIHEDALPGHESGLDPRPEWQPRYKGSDRLAGKVAIITGADSGIGRAVAALYAREGADIAIAYLCEDDDAAETK RIVEAEGRQAITIRGDIGEKDTSERIVAETLSAFGKIDILVNNAGEQHPDKDITDITEEQLRRTFQTNIFGMFFLVQAAR PHLKEGAAIINCTSVTMYQGSKELLDYSSTKGAITAFTRSLSENLVGDGIRVNAVAPGPIWTPLNPCGGASPEKLEHFGE NTPMGRPGQPNEVAPAFLFLACDDSSYMSGQVLHPNGGTIVNG
Sequences:
>Translated_283_residues MSDTQGMIHEDALPGHESGLDPRPEWQPRYKGSDRLAGKVAIITGADSGIGRAVAALYAREGADIAIAYLCEDDDAAETK RIVEAEGRQAITIRGDIGEKDTSERIVAETLSAFGKIDILVNNAGEQHPDKDITDITEEQLRRTFQTNIFGMFFLVQAAR PHLKEGAAIINCTSVTMYQGSKELLDYSSTKGAITAFTRSLSENLVGDGIRVNAVAPGPIWTPLNPCGGASPEKLEHFGE NTPMGRPGQPNEVAPAFLFLACDDSSYMSGQVLHPNGGTIVNG >Mature_282_residues SDTQGMIHEDALPGHESGLDPRPEWQPRYKGSDRLAGKVAIITGADSGIGRAVAALYAREGADIAIAYLCEDDDAAETKR IVEAEGRQAITIRGDIGEKDTSERIVAETLSAFGKIDILVNNAGEQHPDKDITDITEEQLRRTFQTNIFGMFFLVQAARP HLKEGAAIINCTSVTMYQGSKELLDYSSTKGAITAFTRSLSENLVGDGIRVNAVAPGPIWTPLNPCGGASPEKLEHFGEN TPMGRPGQPNEVAPAFLFLACDDSSYMSGQVLHPNGGTIVNG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI59889578, Length=226, Percent_Identity=32.3008849557522, Blast_Score=119, Evalue=4e-27, Organism=Homo sapiens, GI32483357, Length=250, Percent_Identity=30.8, Blast_Score=114, Evalue=9e-26, Organism=Homo sapiens, GI15277342, Length=258, Percent_Identity=30.6201550387597, Blast_Score=106, Evalue=3e-23, Organism=Homo sapiens, GI40254992, Length=243, Percent_Identity=32.0987654320988, Blast_Score=105, Evalue=3e-23, Organism=Homo sapiens, GI5031737, Length=264, Percent_Identity=28.7878787878788, Blast_Score=98, Evalue=7e-21, Organism=Homo sapiens, GI19923817, Length=257, Percent_Identity=29.9610894941634, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI7705925, Length=247, Percent_Identity=30.3643724696356, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI10190704, Length=283, Percent_Identity=29.6819787985866, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI126723750, Length=253, Percent_Identity=27.2727272727273, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI66933014, Length=251, Percent_Identity=29.0836653386454, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI4758504, Length=255, Percent_Identity=27.843137254902, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI33667109, Length=215, Percent_Identity=30.2325581395349, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI31542939, Length=211, Percent_Identity=30.8056872037915, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI210032110, Length=190, Percent_Identity=27.8947368421053, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI4503301, Length=262, Percent_Identity=28.6259541984733, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI4504505, Length=253, Percent_Identity=26.8774703557312, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI126723191, Length=191, Percent_Identity=27.2251308900524, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI20149619, Length=220, Percent_Identity=29.0909090909091, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI225579078, Length=205, Percent_Identity=31.219512195122, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI83715985, Length=255, Percent_Identity=25.4901960784314, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI1789378, Length=267, Percent_Identity=45.6928838951311, Blast_Score=243, Evalue=1e-65, Organism=Escherichia coli, GI2367175, Length=252, Percent_Identity=35.3174603174603, Blast_Score=139, Evalue=2e-34, Organism=Escherichia coli, GI1788459, Length=247, Percent_Identity=33.6032388663968, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI1787905, Length=249, Percent_Identity=34.5381526104418, Blast_Score=121, Evalue=5e-29, Organism=Escherichia coli, GI1789208, Length=248, Percent_Identity=31.4516129032258, Blast_Score=118, Evalue=6e-28, Organism=Escherichia coli, GI87082160, Length=248, Percent_Identity=32.258064516129, Blast_Score=116, Evalue=2e-27, Organism=Escherichia coli, GI1787335, Length=243, Percent_Identity=31.6872427983539, Blast_Score=114, Evalue=1e-26, Organism=Escherichia coli, GI1790717, Length=254, Percent_Identity=30.7086614173228, Blast_Score=102, Evalue=4e-23, Organism=Escherichia coli, GI87082100, Length=261, Percent_Identity=31.0344827586207, Blast_Score=99, Evalue=5e-22, Organism=Escherichia coli, GI2367365, Length=243, Percent_Identity=29.2181069958848, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1786812, Length=267, Percent_Identity=26.5917602996255, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1787545, Length=254, Percent_Identity=26.3779527559055, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1789057, Length=261, Percent_Identity=27.2030651340996, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1787526, Length=260, Percent_Identity=23.8461538461538, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17551412, Length=261, Percent_Identity=35.632183908046, Blast_Score=130, Evalue=7e-31, Organism=Caenorhabditis elegans, GI17562904, Length=261, Percent_Identity=33.7164750957854, Blast_Score=129, Evalue=1e-30, Organism=Caenorhabditis elegans, GI193204405, Length=262, Percent_Identity=35.8778625954198, Blast_Score=129, Evalue=1e-30, Organism=Caenorhabditis elegans, GI17560332, Length=262, Percent_Identity=35.4961832061069, Blast_Score=127, Evalue=9e-30, Organism=Caenorhabditis elegans, GI17561402, Length=251, Percent_Identity=33.4661354581673, Blast_Score=127, Evalue=9e-30, Organism=Caenorhabditis elegans, GI17560150, Length=264, Percent_Identity=35.9848484848485, Blast_Score=126, Evalue=1e-29, Organism=Caenorhabditis elegans, GI72000259, Length=261, Percent_Identity=32.9501915708812, Blast_Score=125, Evalue=3e-29, Organism=Caenorhabditis elegans, GI17559104, Length=261, Percent_Identity=35.2490421455939, Blast_Score=124, Evalue=7e-29, Organism=Caenorhabditis elegans, GI17538480, Length=261, Percent_Identity=34.4827586206897, Blast_Score=124, Evalue=8e-29, Organism=Caenorhabditis elegans, GI17531453, Length=266, Percent_Identity=33.8345864661654, Blast_Score=122, Evalue=1e-28, Organism=Caenorhabditis elegans, GI17562906, Length=266, Percent_Identity=34.2105263157895, Blast_Score=122, Evalue=1e-28, Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=33.5849056603774, Blast_Score=120, Evalue=6e-28, Organism=Caenorhabditis elegans, GI17562990, Length=265, Percent_Identity=35.0943396226415, Blast_Score=119, Evalue=2e-27, Organism=Caenorhabditis elegans, GI25147288, Length=250, Percent_Identity=32, Blast_Score=117, Evalue=1e-26, Organism=Caenorhabditis elegans, GI17560220, Length=266, Percent_Identity=34.2105263157895, Blast_Score=116, Evalue=1e-26, Organism=Caenorhabditis elegans, GI17560676, Length=249, Percent_Identity=30.5220883534137, Blast_Score=113, Evalue=9e-26, Organism=Caenorhabditis elegans, GI17563726, Length=259, Percent_Identity=32.046332046332, Blast_Score=113, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17565030, Length=274, Percent_Identity=33.5766423357664, Blast_Score=111, Evalue=3e-25, Organism=Caenorhabditis elegans, GI17562910, Length=264, Percent_Identity=34.0909090909091, Blast_Score=110, Evalue=6e-25, Organism=Caenorhabditis elegans, GI17562908, Length=261, Percent_Identity=30.2681992337165, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17544670, Length=262, Percent_Identity=31.6793893129771, Blast_Score=108, Evalue=4e-24, Organism=Caenorhabditis elegans, GI71994604, Length=249, Percent_Identity=32.1285140562249, Blast_Score=108, Evalue=5e-24, Organism=Caenorhabditis elegans, GI17555706, Length=269, Percent_Identity=31.5985130111524, Blast_Score=107, Evalue=9e-24, Organism=Caenorhabditis elegans, GI71994600, Length=248, Percent_Identity=31.4516129032258, Blast_Score=107, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17538182, Length=255, Percent_Identity=28.6274509803922, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17536025, Length=267, Percent_Identity=28.8389513108614, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI115534694, Length=243, Percent_Identity=28.3950617283951, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17536651, Length=257, Percent_Identity=27.6264591439689, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17564282, Length=187, Percent_Identity=31.5508021390374, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17567345, Length=192, Percent_Identity=29.1666666666667, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17508895, Length=201, Percent_Identity=28.8557213930348, Blast_Score=72, Evalue=5e-13, Organism=Caenorhabditis elegans, GI193203117, Length=189, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17558006, Length=245, Percent_Identity=28.1632653061224, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193207185, Length=145, Percent_Identity=34.4827586206897, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17508651, Length=249, Percent_Identity=24.0963855421687, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17561272, Length=260, Percent_Identity=29.2307692307692, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI193203115, Length=186, Percent_Identity=29.0322580645161, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17568967, Length=253, Percent_Identity=25.6916996047431, Blast_Score=64, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=201, Percent_Identity=30.3482587064677, Blast_Score=77, Evalue=4e-15, Organism=Saccharomyces cerevisiae, GI6322226, Length=190, Percent_Identity=27.3684210526316, Blast_Score=72, Evalue=7e-14, Organism=Saccharomyces cerevisiae, GI6322227, Length=259, Percent_Identity=27.4131274131274, Blast_Score=68, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6322861, Length=194, Percent_Identity=25.7731958762887, Blast_Score=65, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=257, Percent_Identity=25.2918287937743, Blast_Score=62, Evalue=7e-11, Organism=Drosophila melanogaster, GI24644339, Length=251, Percent_Identity=37.0517928286853, Blast_Score=136, Evalue=2e-32, Organism=Drosophila melanogaster, GI21357041, Length=245, Percent_Identity=36.734693877551, Blast_Score=135, Evalue=4e-32, Organism=Drosophila melanogaster, GI28571526, Length=245, Percent_Identity=35.9183673469388, Blast_Score=129, Evalue=3e-30, Organism=Drosophila melanogaster, GI23397609, Length=248, Percent_Identity=35.4838709677419, Blast_Score=126, Evalue=1e-29, Organism=Drosophila melanogaster, GI21355319, Length=250, Percent_Identity=30, Blast_Score=115, Evalue=4e-26, Organism=Drosophila melanogaster, GI24639444, Length=256, Percent_Identity=33.203125, Blast_Score=111, Evalue=5e-25, Organism=Drosophila melanogaster, GI24644337, Length=252, Percent_Identity=34.9206349206349, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI24643142, Length=248, Percent_Identity=31.0483870967742, Blast_Score=94, Evalue=8e-20, Organism=Drosophila melanogaster, GI281364892, Length=197, Percent_Identity=28.9340101522843, Blast_Score=81, Evalue=9e-16, Organism=Drosophila melanogaster, GI17737361, Length=258, Percent_Identity=27.5193798449612, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI24641232, Length=206, Percent_Identity=27.1844660194175, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI22024069, Length=205, Percent_Identity=33.1707317073171, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24640492, Length=177, Percent_Identity=27.683615819209, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI21358495, Length=208, Percent_Identity=28.3653846153846, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI19921754, Length=206, Percent_Identity=31.0679611650485, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI45554248, Length=217, Percent_Identity=29.9539170506912, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI24640117, Length=217, Percent_Identity=29.9539170506912, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI18859837, Length=194, Percent_Identity=26.8041237113402, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI161076933, Length=193, Percent_Identity=26.9430051813472, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI24647946, Length=203, Percent_Identity=29.5566502463054, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24584748, Length=190, Percent_Identity=26.3157894736842, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI45553409, Length=202, Percent_Identity=29.7029702970297, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI24647948, Length=202, Percent_Identity=29.7029702970297, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 30315; Mature: 30184
Theoretical pI: Translated: 4.55; Mature: 4.55
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDTQGMIHEDALPGHESGLDPRPEWQPRYKGSDRLAGKVAIITGADSGIGRAVAALYAR CCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHC EGADIAIAYLCEDDDAAETKRIVEAEGRQAITIRGDIGEKDTSERIVAETLSAFGKIDIL CCCCEEEEEEECCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCEEEEE VNNAGEQHPDKDITDITEEQLRRTFQTNIFGMFFLVQAARPHLKEGAAIINCTSVTMYQG EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEEEEEEEECC SKELLDYSSTKGAITAFTRSLSENLVGDGIRVNAVAPGPIWTPLNPCGGASPEKLEHFGE CHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHCCC NTPMGRPGQPNEVAPAFLFLACDDSSYMSGQVLHPNGGTIVNG CCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEECCCCCEEECC >Mature Secondary Structure SDTQGMIHEDALPGHESGLDPRPEWQPRYKGSDRLAGKVAIITGADSGIGRAVAALYAR CCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHC EGADIAIAYLCEDDDAAETKRIVEAEGRQAITIRGDIGEKDTSERIVAETLSAFGKIDIL CCCCEEEEEEECCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCEEEEE VNNAGEQHPDKDITDITEEQLRRTFQTNIFGMFFLVQAARPHLKEGAAIINCTSVTMYQG EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEEEEEEEECC SKELLDYSSTKGAITAFTRSLSENLVGDGIRVNAVAPGPIWTPLNPCGGASPEKLEHFGE CHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHCCC NTPMGRPGQPNEVAPAFLFLACDDSSYMSGQVLHPNGGTIVNG CCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEECCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377; 8196543 [H]