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The map label for this gene is 148550653

Identifier: 148550653

GI number: 148550653

Start: 106968

End: 108230

Strand: Reverse

Name: 148550653

Synonym: Swit_5216

Alternate gene names: NA

Gene position: 108230-106968 (Counterclockwise)

Preceding gene: 148550654

Following gene: 148550647

Centisome position: 34.89

GC content: 66.19

Gene sequence:

>1263_bases
ATGGCCGACATCGAAACCTTCGTTTTCGTCTATTTGGACGGCGTTGCCGTCCCTGCGGGCCTTTTGCGCCTCCACAGCGA
GCCGCGTGCCAGCTACGCGACCTTCGCATACGGCAATCGCTATCTCGAGCGGCCCGACCGTGTCGCGATCGATCCTGTGA
CCCTGCCGCTGCCGCCGGCCGGCACGCGCCAGGAATTCCGGACCGAGGAAGGCTTTGCCGTCTTCAATGGGATCCGCGAC
GCCGCGCCCGACGGGTGGGGTCAGTATCTCATGTACAAGGCGATGGGCGAGCGAACGCCAAGCGAGGCGGATCTCCTGCT
CGCGTCCGGTGACCACCGCGTCGGCGCACTGGCGTTCGGTCCCACGCTAGAGGCGCCAAGGCGCCTCGCGCCCTGGGGCG
AAGCCGACGCGCCCGGCGAACAGTTCACCCTGGCAGAACTGGCCGCCGCCGCCGAAGAAGCGCAGGAGGTCGACCAGCTC
AGCGAAAATCTGCGCCCCCTCTTGACCGCCGGCTCGTCGCTGGGCGGTGCGCGTCCCAAGGCGGCGACGACGATCGAGGG
CCAATCCTGGATCGCCAAGTTTCCAGCACGCAACGACACCTTTCCCGAGTGCCGGGTCGAGCTAGCCACCATGCGGCTCG
CCGCTGAATGCGGGCTCGACGTTCCGTCGCTTCGCTTCGAGCAACTGCTCGGCCGCGACATCTATCTGATCGAACGTTTC
GATCGCAGGCTGGACGGCAACCGGATGCTGCGCACCTCCTTCGCATCGGGGCTTACGATGCTGGGCGCGCATGAAAGCGA
GGTCAGCCGCTATGCCTATGCCGATCTGGGCGCGACGCTACGCCAGCACGGCACTGCGGTCCGGCGGGATCTCGAGGAAC
TGTTCAGGCGCATGGTCTTCAATATCCTCGTCACCAATGACGACGATCACCTGCGCAATCATGGTTTCCTGTGGGACGGG
AAGGGGTGGCGGCTGTCGCCGCTCTATGACGTCGTTCCCAAGCCGCAGGTGGGCCTGGATCGCCGGCTCGTGCTGGGCGT
GGGGGCCGAGGGTCGCCAGGCCAGCCTTGCCAACGCGCTCTCGCAGGTCGCGCAGTTCGACCTGGGGGAGGAGGATGCGC
GCGCGATCGTTATCGCTATGGCCGATAGGGTTCATGCGCGGTGGCGTGCCTGTTTCGAAGAGGCAGGGGTCAACGTCGCC
GACCAGGGCCGTTTTGCTACCTGCTTTCGCCTGGCGGACCCCGAACATCGCGCAATCGGCTGA

Upstream 100 bases:

>100_bases
CGCCCCTGAAACCGACAGGGTCGGGACCAGCGAGGAAATCGGCCGCCTGCCGCACAGCATCCACACGCCGCGGCGCGACG
ATCCGCTGGATTTCTAAGCC

Downstream 100 bases:

>100_bases
CAGGCCAGCGATTTCACGCCGAAGGGCGTCACAGGGCCCCGGCGCTCCAGAGGGATTTCAGGCAGCGCGCGCTTCGGCCG
ACGCGGTAGAGAAAGCAGCG

Product: HipA domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 419

Protein sequence:

>420_residues
MADIETFVFVYLDGVAVPAGLLRLHSEPRASYATFAYGNRYLERPDRVAIDPVTLPLPPAGTRQEFRTEEGFAVFNGIRD
AAPDGWGQYLMYKAMGERTPSEADLLLASGDHRVGALAFGPTLEAPRRLAPWGEADAPGEQFTLAELAAAAEEAQEVDQL
SENLRPLLTAGSSLGGARPKAATTIEGQSWIAKFPARNDTFPECRVELATMRLAAECGLDVPSLRFEQLLGRDIYLIERF
DRRLDGNRMLRTSFASGLTMLGAHESEVSRYAYADLGATLRQHGTAVRRDLEELFRRMVFNILVTNDDDHLRNHGFLWDG
KGWRLSPLYDVVPKPQVGLDRRLVLGVGAEGRQASLANALSQVAQFDLGEEDARAIVIAMADRVHARWRACFEEAGVNVA
DQGRFATCFRLADPEHRAIG

Sequences:

>Translated_420_residues
MADIETFVFVYLDGVAVPAGLLRLHSEPRASYATFAYGNRYLERPDRVAIDPVTLPLPPAGTRQEFRTEEGFAVFNGIRD
AAPDGWGQYLMYKAMGERTPSEADLLLASGDHRVGALAFGPTLEAPRRLAPWGEADAPGEQFTLAELAAAAEEAQEVDQL
SENLRPLLTAGSSLGGARPKAATTIEGQSWIAKFPARNDTFPECRVELATMRLAAECGLDVPSLRFEQLLGRDIYLIERF
DRRLDGNRMLRTSFASGLTMLGAHESEVSRYAYADLGATLRQHGTAVRRDLEELFRRMVFNILVTNDDDHLRNHGFLWDG
KGWRLSPLYDVVPKPQVGLDRRLVLGVGAEGRQASLANALSQVAQFDLGEEDARAIVIAMADRVHARWRACFEEAGVNVA
DQGRFATCFRLADPEHRAIG
>Mature_419_residues
ADIETFVFVYLDGVAVPAGLLRLHSEPRASYATFAYGNRYLERPDRVAIDPVTLPLPPAGTRQEFRTEEGFAVFNGIRDA
APDGWGQYLMYKAMGERTPSEADLLLASGDHRVGALAFGPTLEAPRRLAPWGEADAPGEQFTLAELAAAAEEAQEVDQLS
ENLRPLLTAGSSLGGARPKAATTIEGQSWIAKFPARNDTFPECRVELATMRLAAECGLDVPSLRFEQLLGRDIYLIERFD
RRLDGNRMLRTSFASGLTMLGAHESEVSRYAYADLGATLRQHGTAVRRDLEELFRRMVFNILVTNDDDHLRNHGFLWDGK
GWRLSPLYDVVPKPQVGLDRRLVLGVGAEGRQASLANALSQVAQFDLGEEDARAIVIAMADRVHARWRACFEEAGVNVAD
QGRFATCFRLADPEHRAIG

Specific function: Unknown

COG id: COG3550

COG function: function code R; Uncharacterized protein related to capsule biosynthesis enzymes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To E.coli hipA, H.influenzae HI_0665 and y4dM [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012893
- InterPro:   IPR012894
- InterPro:   IPR017508 [H]

Pfam domain/function: PF07804 HipA_C; PF07805 HipA_N [H]

EC number: NA

Molecular weight: Translated: 46343; Mature: 46212

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADIETFVFVYLDGVAVPAGLLRLHSEPRASYATFAYGNRYLERPDRVAIDPVTLPLPPA
CCCHHEEEEEEECCHHHHHHHHHHCCCCCCCEEEEHHCCHHHCCCCCEEECCEEECCCCC
GTRQEFRTEEGFAVFNGIRDAAPDGWGQYLMYKAMGERTPSEADLLLASGDHRVGALAFG
CCHHHHHCCCCHHHHHCHHHCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEEEC
PTLEAPRRLAPWGEADAPGEQFTLAELAAAAEEAQEVDQLSENLRPLLTAGSSLGGARPK
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
AATTIEGQSWIAKFPARNDTFPECRVELATMRLAAECGLDVPSLRFEQLLGRDIYLIERF
CEEEECCCHHHEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHH
DRRLDGNRMLRTSFASGLTMLGAHESEVSRYAYADLGATLRQHGTAVRRDLEELFRRMVF
HHHCCCCHHHHHHHHCCHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NILVTNDDDHLRNHGFLWDGKGWRLSPLYDVVPKPQVGLDRRLVLGVGAEGRQASLANAL
EEEEECCCHHHHCCCEEECCCCCCCCCHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHH
SQVAQFDLGEEDARAIVIAMADRVHARWRACFEEAGVNVADQGRFATCFRLADPEHRAIG
HHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCHHCCCC
>Mature Secondary Structure 
ADIETFVFVYLDGVAVPAGLLRLHSEPRASYATFAYGNRYLERPDRVAIDPVTLPLPPA
CCHHEEEEEEECCHHHHHHHHHHCCCCCCCEEEEHHCCHHHCCCCCEEECCEEECCCCC
GTRQEFRTEEGFAVFNGIRDAAPDGWGQYLMYKAMGERTPSEADLLLASGDHRVGALAFG
CCHHHHHCCCCHHHHHCHHHCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEEEC
PTLEAPRRLAPWGEADAPGEQFTLAELAAAAEEAQEVDQLSENLRPLLTAGSSLGGARPK
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
AATTIEGQSWIAKFPARNDTFPECRVELATMRLAAECGLDVPSLRFEQLLGRDIYLIERF
CEEEECCCHHHEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHH
DRRLDGNRMLRTSFASGLTMLGAHESEVSRYAYADLGATLRQHGTAVRRDLEELFRRMVF
HHHCCCCHHHHHHHHCCHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NILVTNDDDHLRNHGFLWDGKGWRLSPLYDVVPKPQVGLDRRLVLGVGAEGRQASLANAL
EEEEECCCHHHHCCCEEECCCCCCCCCHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHH
SQVAQFDLGEEDARAIVIAMADRVHARWRACFEEAGVNVADQGRFATCFRLADPEHRAIG
HHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]