Definition | Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence. |
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Accession | NC_009507 |
Length | 310,228 |
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The map label for this gene is 148550632
Identifier: 148550632
GI number: 148550632
Start: 82068
End: 82892
Strand: Reverse
Name: 148550632
Synonym: Swit_5193
Alternate gene names: NA
Gene position: 82892-82068 (Counterclockwise)
Preceding gene: 148550633
Following gene: 148550631
Centisome position: 26.72
GC content: 68.97
Gene sequence:
>825_bases ATGTCCGATCACAGCAGCCACTTCGAAACCACTGGCGGCGGTCTCGTCCTGACCAACGCCGTTCTGCTCTATCAGGCGGG AACGCCCCGCACGCCCAGCCCTTATGGCGCTCCAAGGCCGGATGCGGCGGCCTTCGCCAGCATGCATGCCGTCGAGCACG ATGCGGACGGGCGTCCGACGATCGCCGCCGGCGTGCCCCTGTCGCGGGCACAGCTGCGCCAATGGACAGAGGCGCTGGGC CGGACCGCGGTTCCAGAGATCCTGCCGGCCAATGTGCTTGTCTCCCACCCGGACGTCCTCGCCTGGTGGGTGCCGGAGCA GGTGCGCCAAGCCTATTTTGCGCTGTCGTCGCCCCCCGATGGCCTTCGGGCGCTCGCACGGCGCACTACCGTCGCGGTGC CATACCCGGCCCATCTGTTCGTCGCCACGCGCTCCGGCCTCGGCGTTTACGCGCTTGCCGCAAGCGAGCGCCCTGCCGCC GACACGCCGGTGCTCCATTCGCCGATCCTCAACGTCTTCATCCAAGGCCGGCTGTGCTGGGGCAACATCCCGAGGCCGAA AACACTGGGCGTTGCCGCCATCTCGGAATTCGAGCGCGCGGTGTTCGACAGCTGGTCAACTCACCCCAACCCCGGCCAGG AGCGGACGGTCACGGGGAAGGGCGGCCTGGTCAGGCTCTGGGACGATCTTGCCGCGCGCGGCGCGCGTCGTTTTCCGGTG AAGCGGCTCCGATCCTTCCATCCTGCCGCCGGCCAGCGGCAAGTCCGTCCCGCCGCTGATGCGGTCACGGTCGGTATGCT CGTTGCCGCAGCGGCAGGGAGATGA
Upstream 100 bases:
>100_bases CGGATCGACGACTGGTTCGCAAGCCTGCGCCTCGGCGTCCAGTTCCTGCTCGCCGCCCAGGACCTCGTCCGCTTCGACCC ACCCAATCCGTGAGGCCGTC
Downstream 100 bases:
>100_bases TCATGATCGCCGAAGATCCGACCGCGGCGGCACTGCTCGCTGTCGTGCCCTGCTATCCGGTGCCATCGAGCGGTGGCTCG CCGGCACTCGACGCGCTTCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 274; Mature: 273
Protein sequence:
>274_residues MSDHSSHFETTGGGLVLTNAVLLYQAGTPRTPSPYGAPRPDAAAFASMHAVEHDADGRPTIAAGVPLSRAQLRQWTEALG RTAVPEILPANVLVSHPDVLAWWVPEQVRQAYFALSSPPDGLRALARRTTVAVPYPAHLFVATRSGLGVYALAASERPAA DTPVLHSPILNVFIQGRLCWGNIPRPKTLGVAAISEFERAVFDSWSTHPNPGQERTVTGKGGLVRLWDDLAARGARRFPV KRLRSFHPAAGQRQVRPAADAVTVGMLVAAAAGR
Sequences:
>Translated_274_residues MSDHSSHFETTGGGLVLTNAVLLYQAGTPRTPSPYGAPRPDAAAFASMHAVEHDADGRPTIAAGVPLSRAQLRQWTEALG RTAVPEILPANVLVSHPDVLAWWVPEQVRQAYFALSSPPDGLRALARRTTVAVPYPAHLFVATRSGLGVYALAASERPAA DTPVLHSPILNVFIQGRLCWGNIPRPKTLGVAAISEFERAVFDSWSTHPNPGQERTVTGKGGLVRLWDDLAARGARRFPV KRLRSFHPAAGQRQVRPAADAVTVGMLVAAAAGR >Mature_273_residues SDHSSHFETTGGGLVLTNAVLLYQAGTPRTPSPYGAPRPDAAAFASMHAVEHDADGRPTIAAGVPLSRAQLRQWTEALGR TAVPEILPANVLVSHPDVLAWWVPEQVRQAYFALSSPPDGLRALARRTTVAVPYPAHLFVATRSGLGVYALAASERPAAD TPVLHSPILNVFIQGRLCWGNIPRPKTLGVAAISEFERAVFDSWSTHPNPGQERTVTGKGGLVRLWDDLAARGARRFPVK RLRSFHPAAGQRQVRPAADAVTVGMLVAAAAGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29286; Mature: 29154
Theoretical pI: Translated: 10.77; Mature: 10.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDHSSHFETTGGGLVLTNAVLLYQAGTPRTPSPYGAPRPDAAAFASMHAVEHDADGRPT CCCCCCCCCCCCCCEEEECEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCE IAAGVPLSRAQLRQWTEALGRTAVPEILPANVLVSHPDVLAWWVPEQVRQAYFALSSPPD EEECCCCCHHHHHHHHHHHCCCCCHHHCCCCEEECCCCEEEECCHHHHHHHHHHCCCCCH GLRALARRTTVAVPYPAHLFVATRSGLGVYALAASERPAADTPVLHSPILNVFIQGRLCW HHHHHHHHCEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHEECEEEE GNIPRPKTLGVAAISEFERAVFDSWSTHPNPGQERTVTGKGGLVRLWDDLAARGARRFPV CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCEEEHHHHHHHCCCCCCCH KRLRSFHPAAGQRQVRPAADAVTVGMLVAAAAGR HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure SDHSSHFETTGGGLVLTNAVLLYQAGTPRTPSPYGAPRPDAAAFASMHAVEHDADGRPT CCCCCCCCCCCCCEEEECEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCE IAAGVPLSRAQLRQWTEALGRTAVPEILPANVLVSHPDVLAWWVPEQVRQAYFALSSPPD EEECCCCCHHHHHHHHHHHCCCCCHHHCCCCEEECCCCEEEECCHHHHHHHHHHCCCCCH GLRALARRTTVAVPYPAHLFVATRSGLGVYALAASERPAADTPVLHSPILNVFIQGRLCW HHHHHHHHCEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHEECEEEE GNIPRPKTLGVAAISEFERAVFDSWSTHPNPGQERTVTGKGGLVRLWDDLAARGARRFPV CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCEEEHHHHHHHCCCCCCCH KRLRSFHPAAGQRQVRPAADAVTVGMLVAAAAGR HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA