Definition | Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence. |
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Accession | NC_009507 |
Length | 310,228 |
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The map label for this gene is 148550588
Identifier: 148550588
GI number: 148550588
Start: 41146
End: 41880
Strand: Reverse
Name: 148550588
Synonym: Swit_5149
Alternate gene names: NA
Gene position: 41880-41146 (Counterclockwise)
Preceding gene: 148550590
Following gene: 148550587
Centisome position: 13.5
GC content: 61.63
Gene sequence:
>735_bases ATGACATTCGGCTACGCGCTGCTTGGCGCTCTGGTTCTTCTGCTTCCCGGGTTTGCGGGTTATTTCGGTCTTCGTATTGG CGAGGCGAGTGATTTTGTGTCGCCGCGGCCCGACCGGCCCAATTCCAATCTCACCATTTTCCTGATTGTGCTGCTGGCGC TCGCTGCGCACACCGCCGGGGCGGGAATTTTTGCCTTCAACGAAGCGATAGCGGCGTGGAAGCCGCTGATCTCGCTTCCC TATGATCCCAATCCCTACAAGGCACTTCTGTCCGGCCAGGTCCCATCGGGGCTTTCCGCGCTCGCAATCGAACTGGAACT GCTGTTCTGCCTGGCGCTTTCCTTTGGGACCGGCTGGGTCTGCGAGAGAATGGCGCGCGCCAAGCCGATTACGACCCGAA CCGCGCCCTTGCGCTTCGGATGGCTCCTGCCGATCGTCGAGAAGGTCGAGGCCGGTGGCCATGTCGCGGTCGGTTATGTG CGCACGACGAGCGGCCACAACGGTGCCTGGGTCGCCTATGAAGGCAGCATCCGGCGCCTGACGCTCGACGATGACGACGG AATCCGCATGGTGGTGCTCGAGCAGTGCGATCGCTTCATTGTCCGGATGACGGACGACAAGATCGAGCGGGTCGACATGG ACAGCGCGCCGATCGCCATGATGCATCTTGCCGCCGACCAGATCGCCGATTTCGCAATCGAACTGTTCGAGGTTCCCGAG ATCGGCGCTGACTGA
Upstream 100 bases:
>100_bases ACGCGAGGCGGCCGTCCAGCGCGATGGCGTCTATGTCATCGATCGGGCGAAGATTCGTGCTGAAAAGGCCAAGAAGCTCG CCAAGACGGCCTGATCTCGA
Downstream 100 bases:
>100_bases GGCGAGCGGCGGCGTTCTGCTCAAAACATGCGGCACAAGGCGCGACACATCTGTGCCGCATGGTTTTTCCCCGTTCGTCA TCATCCGCAAAATTTGCCCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 244; Mature: 243
Protein sequence:
>244_residues MTFGYALLGALVLLLPGFAGYFGLRIGEASDFVSPRPDRPNSNLTIFLIVLLALAAHTAGAGIFAFNEAIAAWKPLISLP YDPNPYKALLSGQVPSGLSALAIELELLFCLALSFGTGWVCERMARAKPITTRTAPLRFGWLLPIVEKVEAGGHVAVGYV RTTSGHNGAWVAYEGSIRRLTLDDDDGIRMVVLEQCDRFIVRMTDDKIERVDMDSAPIAMMHLAADQIADFAIELFEVPE IGAD
Sequences:
>Translated_244_residues MTFGYALLGALVLLLPGFAGYFGLRIGEASDFVSPRPDRPNSNLTIFLIVLLALAAHTAGAGIFAFNEAIAAWKPLISLP YDPNPYKALLSGQVPSGLSALAIELELLFCLALSFGTGWVCERMARAKPITTRTAPLRFGWLLPIVEKVEAGGHVAVGYV RTTSGHNGAWVAYEGSIRRLTLDDDDGIRMVVLEQCDRFIVRMTDDKIERVDMDSAPIAMMHLAADQIADFAIELFEVPE IGAD >Mature_243_residues TFGYALLGALVLLLPGFAGYFGLRIGEASDFVSPRPDRPNSNLTIFLIVLLALAAHTAGAGIFAFNEAIAAWKPLISLPY DPNPYKALLSGQVPSGLSALAIELELLFCLALSFGTGWVCERMARAKPITTRTAPLRFGWLLPIVEKVEAGGHVAVGYVR TTSGHNGAWVAYEGSIRRLTLDDDDGIRMVVLEQCDRFIVRMTDDKIERVDMDSAPIAMMHLAADQIADFAIELFEVPEI GAD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26468; Mature: 26337
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFGYALLGALVLLLPGFAGYFGLRIGEASDFVSPRPDRPNSNLTIFLIVLLALAAHTAG CCHHHHHHHHHHHHHCCHHHHHHEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC AGIFAFNEAIAAWKPLISLPYDPNPYKALLSGQVPSGLSALAIELELLFCLALSFGTGWV CCHHHHHHHHHHHHHHEECCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHH CERMARAKPITTRTAPLRFGWLLPIVEKVEAGGHVAVGYVRTTSGHNGAWVAYEGSIRRL HHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEECCEEEE TLDDDDGIRMVVLEQCDRFIVRMTDDKIERVDMDSAPIAMMHLAADQIADFAIELFEVPE EECCCCCEEEHHHHHHHHHEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC IGAD CCCC >Mature Secondary Structure TFGYALLGALVLLLPGFAGYFGLRIGEASDFVSPRPDRPNSNLTIFLIVLLALAAHTAG CHHHHHHHHHHHHHCCHHHHHHEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC AGIFAFNEAIAAWKPLISLPYDPNPYKALLSGQVPSGLSALAIELELLFCLALSFGTGWV CCHHHHHHHHHHHHHHEECCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHH CERMARAKPITTRTAPLRFGWLLPIVEKVEAGGHVAVGYVRTTSGHNGAWVAYEGSIRRL HHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEECCEEEE TLDDDDGIRMVVLEQCDRFIVRMTDDKIERVDMDSAPIAMMHLAADQIADFAIELFEVPE EECCCCCEEEHHHHHHHHHEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC IGAD CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA