Definition | Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence. |
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Accession | NC_009507 |
Length | 310,228 |
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The map label for this gene is 148550584
Identifier: 148550584
GI number: 148550584
Start: 38831
End: 39523
Strand: Direct
Name: 148550584
Synonym: Swit_5145
Alternate gene names: NA
Gene position: 38831-39523 (Clockwise)
Preceding gene: 148550570
Following gene: 148550585
Centisome position: 12.52
GC content: 65.37
Gene sequence:
>693_bases ATGGCAAAACGTCTTTCGGTCGTTTCTGTGAGCGATTGGGGGATTCACAAGAGTCGTGCTTTGTGCTTGATTCGTTCCAT GCTTCAGTTCGATCTCTTCGCGCCATCGATCCCAACCCCGGCGCCAGCACCAGTAGTTGGCCTGCCGGATATCGTGCGCA TCATCGCGGAGCACTCGGGTCGGCCGCGCTACACCTTCATGGTGCTCGATCTCATCGCCAGGGCCGCCCGGACGAACGGG GAGGCGGGGCCTCTGGTTCGAGAAGGCGAGGTTCTGGTGCCCATCCGCGAATGGCTGGCCGCGGCGATTGCGCCGAGCGG CGCGCGTCACCACCAGCGCCGGGCCACCGCCGATAAGGTCCGGGCTGCGCTCGCAGCCAAAGGAGAATTGCCGGGCGATC CGGTGGAGGCCGCGCGCCGCGTCGACGCGGAACTCAGCGAGCGCATCCGCGAAACCGGCATGACGGCGATCAGCCGGGCG GTGTCGGAGTTGGTGAAGGCAGGACTGATCAGACGGCATTACCAGGGCTTTTTCGTGGACCATGAGAACCGCGGTGCGCA GCGTCATGCGGTCTATACGGTCACGGATGCGGTCCGCGCCGCGCTTCAGCCGAGCATCGTGACCAGCGAAAACCGGCGGC AGCCTTATGTACGAGGCGCACACGCTCAGCCTCGAGCGGCTGCGGCGCGGTAG
Upstream 100 bases:
>100_bases GCCACAAAATGTCAATGATTGTGGCCACGGGGCAGATGCATCGATCAATGACGGCTGCGTCACTTTACCCTTCAGGTACC GGTCGGGTAAAGTGACACGG
Downstream 100 bases:
>100_bases GATCGCAGCTTCACATTTCTCGGCGACGATCGGTTCCTGCTGGTCTCTCCAAGCGCATTCAATGGGCTTGGCGTGTGCAC GACCCAGCTCCACAACGAGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 230; Mature: 229
Protein sequence:
>230_residues MAKRLSVVSVSDWGIHKSRALCLIRSMLQFDLFAPSIPTPAPAPVVGLPDIVRIIAEHSGRPRYTFMVLDLIARAARTNG EAGPLVREGEVLVPIREWLAAAIAPSGARHHQRRATADKVRAALAAKGELPGDPVEAARRVDAELSERIRETGMTAISRA VSELVKAGLIRRHYQGFFVDHENRGAQRHAVYTVTDAVRAALQPSIVTSENRRQPYVRGAHAQPRAAAAR
Sequences:
>Translated_230_residues MAKRLSVVSVSDWGIHKSRALCLIRSMLQFDLFAPSIPTPAPAPVVGLPDIVRIIAEHSGRPRYTFMVLDLIARAARTNG EAGPLVREGEVLVPIREWLAAAIAPSGARHHQRRATADKVRAALAAKGELPGDPVEAARRVDAELSERIRETGMTAISRA VSELVKAGLIRRHYQGFFVDHENRGAQRHAVYTVTDAVRAALQPSIVTSENRRQPYVRGAHAQPRAAAAR >Mature_229_residues AKRLSVVSVSDWGIHKSRALCLIRSMLQFDLFAPSIPTPAPAPVVGLPDIVRIIAEHSGRPRYTFMVLDLIARAARTNGE AGPLVREGEVLVPIREWLAAAIAPSGARHHQRRATADKVRAALAAKGELPGDPVEAARRVDAELSERIRETGMTAISRAV SELVKAGLIRRHYQGFFVDHENRGAQRHAVYTVTDAVRAALQPSIVTSENRRQPYVRGAHAQPRAAAAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25103; Mature: 24972
Theoretical pI: Translated: 11.41; Mature: 11.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKRLSVVSVSDWGIHKSRALCLIRSMLQFDLFAPSIPTPAPAPVVGLPDIVRIIAEHSG CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCC RPRYTFMVLDLIARAARTNGEAGPLVREGEVLVPIREWLAAAIAPSGARHHQRRATADKV CCCHHHHHHHHHHHHHHCCCCCCCEEECCCEEEHHHHHHHHHHCCCCHHHHHHHHHHHHH RAALAAKGELPGDPVEAARRVDAELSERIRETGMTAISRAVSELVKAGLIRRHYQGFFVD HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE HENRGAQRHAVYTVTDAVRAALQPSIVTSENRRQPYVRGAHAQPRAAAAR CCCCCCCHHHEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure AKRLSVVSVSDWGIHKSRALCLIRSMLQFDLFAPSIPTPAPAPVVGLPDIVRIIAEHSG CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCC RPRYTFMVLDLIARAARTNGEAGPLVREGEVLVPIREWLAAAIAPSGARHHQRRATADKV CCCHHHHHHHHHHHHHHCCCCCCCEEECCCEEEHHHHHHHHHHCCCCHHHHHHHHHHHHH RAALAAKGELPGDPVEAARRVDAELSERIRETGMTAISRAVSELVKAGLIRRHYQGFFVD HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE HENRGAQRHAVYTVTDAVRAALQPSIVTSENRRQPYVRGAHAQPRAAAAR CCCCCCCHHHEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA