Click here to switch to the map view.

The map label for this gene is grdC [H]

Identifier: 148379246

GI number: 148379246

Start: 1376957

End: 1378495

Strand: Direct

Name: grdC [H]

Synonym: CBO1263

Alternate gene names: 148379246

Gene position: 1376957-1378495 (Clockwise)

Preceding gene: 148379245

Following gene: 148379247

Centisome position: 35.43

GC content: 34.24

Gene sequence:

>1539_bases
ATGAATTATCCAGTAATAAAAGGAGCATCATATATTTTGGTTCATACTCCAGATATGGTACTTCATAATGGAACTACTCA
AACTACAGAGAAAGTAGTTAATCCAGATTCTGAATATCTTAAAGAACTTCCTAAGCATTTAAGAAATTTTGAAGATGTTT
TAAATTATGCACCTAACCAAACTTATATAGGAAACATGACACCAGATCAGCTAGGTGAAATAGAAATGCCTTGGTGGGAT
AAAAAAATAGAAGAGAGTAGTAGATTTGGCAAATTAGGCGAAATGATGCCTCAAGATGAATTTATAGGACTTATGGAAAT
ATGTGATGTATTTGATTTAGTTGTATTAGAAAAATCCTTTGTAGGGGATGTAAAAAATAAGTTAGAAAAACATCCACTCA
TAGATGAAAACATGATTTCTAAAATAAAAGAGGGAGTAGCTATAGAAGAAATCAAAAAAGTTGTAGATGAGGAAGGGGCA
GAAGGCTTATATAATGAAGGTACATTAGTAGGTTGCGTAAAGAAAGCTCATGATGTGGATGTGAATTTAAGTGCTCATAC
TATGCTAGAAAATTTGGTGGTAAAAGCTTCTGGTGTATTATCCTTATTAAATCTCATAGCTAAAAATAACATAGATCCCA
ATTCCATAGATTATGTTATAGAATGCTCTGAAGAAGCGTGTGGAGACATGAATCAAAGAGGAGGAGGAAACTTTGCAAAA
TCTCTTGCAGAAGTAGCGGGATTTACTAATGCTACAGGAGCGGATATGAGAGGGTTTTGTGCAGGACCGAGCCATTCTCT
AATAGCTGCTTCAGCTTTAGTTCAATCCGGAGTATATGATAATGTAGTTATAGCTGGCGGAGGGGCAAGCGCTAAGTTAG
GTATGAATGGAAAGGACCATGTAAAAAAAGAAATGCCTATACTAGAGGATTGCTTAGGTGGATTTGCTGTATTAGTAAGT
AAAAATGATGGGATAAATCCAATACTTAGAACGGATCTAGTAGGAAAACATACTGTAGGAACAGGATCCTCTCCACAGGC
AGTAATAAGTTCTTTAGTTACAGATCCATTAGATAAAGCAGGATTAAAAATAACTGATGTGGATAAATATTCCGTAGAAA
TGCAAAATCCAGATATAACAAAACCGGCAGGAGCAGGGGATGTACCACAAGCAAACTATAAAATGATAGGTGCTCTAGGA
GTTAAGAAAAAACATATAGAAAAGAAAGAATTAAAAGATTTTATACAAAATCATGGTATGTCAGGTTGGGCACCAACGCA
AGGACATATTCCGTCTGGAGTCCCTTATATAGGTTTTGCTAGAAATGATTTAACAGAAGGTAATTTAAATAGGGTTATGG
TAGTAGGAAAAGGTAGTTTATTCCTAGGACGTATGACAAATTTATTTGATGGGGTATCTATAATTATAGAAAGAAATACA
GGATATAAAGAAGAGGAAAAAGGAATTTCTGAGGATAAAGTGAGAAAAATAATTGCAGAATCCATAAAAAAATTAGCATC
ACAGCTAGTAGAAGAATAA

Upstream 100 bases:

>100_bases
GATTAAAACAGGGAAAGTAGATAAATAAAGAATTATAAAATTTAAGAGGCTGTACTATAGGTTTATAATCCAGCCTCCTA
AATATTAGGGGGGAAAAGCT

Downstream 100 bases:

>100_bases
GGGGTGATGTATAGTATGGATAATAAAGAAGTGAATAAAATAATAGGAAAAACTCTTCTTGATATTGCAGAATCTATAGA
AAAGGGAGACTTTAGTAGAA

Product: glycine reductase complex component C, beta subunit

Products: NA

Alternate protein names: Protein PC beta [H]

Number of amino acids: Translated: 512; Mature: 512

Protein sequence:

>512_residues
MNYPVIKGASYILVHTPDMVLHNGTTQTTEKVVNPDSEYLKELPKHLRNFEDVLNYAPNQTYIGNMTPDQLGEIEMPWWD
KKIEESSRFGKLGEMMPQDEFIGLMEICDVFDLVVLEKSFVGDVKNKLEKHPLIDENMISKIKEGVAIEEIKKVVDEEGA
EGLYNEGTLVGCVKKAHDVDVNLSAHTMLENLVVKASGVLSLLNLIAKNNIDPNSIDYVIECSEEACGDMNQRGGGNFAK
SLAEVAGFTNATGADMRGFCAGPSHSLIAASALVQSGVYDNVVIAGGGASAKLGMNGKDHVKKEMPILEDCLGGFAVLVS
KNDGINPILRTDLVGKHTVGTGSSPQAVISSLVTDPLDKAGLKITDVDKYSVEMQNPDITKPAGAGDVPQANYKMIGALG
VKKKHIEKKELKDFIQNHGMSGWAPTQGHIPSGVPYIGFARNDLTEGNLNRVMVVGKGSLFLGRMTNLFDGVSIIIERNT
GYKEEEKGISEDKVRKIIAESIKKLASQLVEE

Sequences:

>Translated_512_residues
MNYPVIKGASYILVHTPDMVLHNGTTQTTEKVVNPDSEYLKELPKHLRNFEDVLNYAPNQTYIGNMTPDQLGEIEMPWWD
KKIEESSRFGKLGEMMPQDEFIGLMEICDVFDLVVLEKSFVGDVKNKLEKHPLIDENMISKIKEGVAIEEIKKVVDEEGA
EGLYNEGTLVGCVKKAHDVDVNLSAHTMLENLVVKASGVLSLLNLIAKNNIDPNSIDYVIECSEEACGDMNQRGGGNFAK
SLAEVAGFTNATGADMRGFCAGPSHSLIAASALVQSGVYDNVVIAGGGASAKLGMNGKDHVKKEMPILEDCLGGFAVLVS
KNDGINPILRTDLVGKHTVGTGSSPQAVISSLVTDPLDKAGLKITDVDKYSVEMQNPDITKPAGAGDVPQANYKMIGALG
VKKKHIEKKELKDFIQNHGMSGWAPTQGHIPSGVPYIGFARNDLTEGNLNRVMVVGKGSLFLGRMTNLFDGVSIIIERNT
GYKEEEKGISEDKVRKIIAESIKKLASQLVEE
>Mature_512_residues
MNYPVIKGASYILVHTPDMVLHNGTTQTTEKVVNPDSEYLKELPKHLRNFEDVLNYAPNQTYIGNMTPDQLGEIEMPWWD
KKIEESSRFGKLGEMMPQDEFIGLMEICDVFDLVVLEKSFVGDVKNKLEKHPLIDENMISKIKEGVAIEEIKKVVDEEGA
EGLYNEGTLVGCVKKAHDVDVNLSAHTMLENLVVKASGVLSLLNLIAKNNIDPNSIDYVIECSEEACGDMNQRGGGNFAK
SLAEVAGFTNATGADMRGFCAGPSHSLIAASALVQSGVYDNVVIAGGGASAKLGMNGKDHVKKEMPILEDCLGGFAVLVS
KNDGINPILRTDLVGKHTVGTGSSPQAVISSLVTDPLDKAGLKITDVDKYSVEMQNPDITKPAGAGDVPQANYKMIGALG
VKKKHIEKKELKDFIQNHGMSGWAPTQGHIPSGVPYIGFARNDLTEGNLNRVMVVGKGSLFLGRMTNLFDGVSIIIERNT
GYKEEEKGISEDKVRKIIAESIKKLASQLVEE

Specific function: In the first step of glycine, betaine and sarcosine reductases, the substrate is bound to component PB via a Schiff base intermediate. Then the PB-activated substrate is nucleophilically attacked by the selenol anion of component PA to transform it to a c

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013751
- InterPro:   IPR017236
- InterPro:   IPR016039
- InterPro:   IPR016038 [H]

Pfam domain/function: PF08545 ACP_syn_III [H]

EC number: =1.21.4.2; =1.21.4.3; =1.21.4.4 [H]

Molecular weight: Translated: 55558; Mature: 55558

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYPVIKGASYILVHTPDMVLHNGTTQTTEKVVNPDSEYLKELPKHLRNFEDVLNYAPNQ
CCCCEECCCCEEEEECCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC
TYIGNMTPDQLGEIEMPWWDKKIEESSRFGKLGEMMPQDEFIGLMEICDVFDLVVLEKSF
CEECCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
VGDVKNKLEKHPLIDENMISKIKEGVAIEEIKKVVDEEGAEGLYNEGTLVGCVKKAHDVD
HHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCEEEHHHHHCCCC
VNLSAHTMLENLVVKASGVLSLLNLIAKNNIDPNSIDYVIECSEEACGDMNQRGGGNFAK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECHHHCCCCCCCCCCHHHH
SLAEVAGFTNATGADMRGFCAGPSHSLIAASALVQSGVYDNVVIAGGGASAKLGMNGKDH
HHHHHHCCCCCCCCCCCCEECCCCCHHHHHHHHHHCCCCCCEEEECCCCCEEECCCCHHH
VKKEMPILEDCLGGFAVLVSKNDGINPILRTDLVGKHTVGTGSSPQAVISSLVTDPLDKA
HHHHCCHHHHHCCCEEEEEECCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCHHHC
GLKITDVDKYSVEMQNPDITKPAGAGDVPQANYKMIGALGVKKKHIEKKELKDFIQNHGM
CCEEEECCCEEEEECCCCCCCCCCCCCCCCCCCEEEEHHCCHHHHCCHHHHHHHHHHCCC
SGWAPTQGHIPSGVPYIGFARNDLTEGNLNRVMVVGKGSLFLGRMTNLFDGVSIIIERNT
CCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCEEEEEECCC
GYKEEEKGISEDKVRKIIAESIKKLASQLVEE
CCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNYPVIKGASYILVHTPDMVLHNGTTQTTEKVVNPDSEYLKELPKHLRNFEDVLNYAPNQ
CCCCEECCCCEEEEECCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC
TYIGNMTPDQLGEIEMPWWDKKIEESSRFGKLGEMMPQDEFIGLMEICDVFDLVVLEKSF
CEECCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
VGDVKNKLEKHPLIDENMISKIKEGVAIEEIKKVVDEEGAEGLYNEGTLVGCVKKAHDVD
HHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCEEEHHHHHCCCC
VNLSAHTMLENLVVKASGVLSLLNLIAKNNIDPNSIDYVIECSEEACGDMNQRGGGNFAK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECHHHCCCCCCCCCCHHHH
SLAEVAGFTNATGADMRGFCAGPSHSLIAASALVQSGVYDNVVIAGGGASAKLGMNGKDH
HHHHHHCCCCCCCCCCCCEECCCCCHHHHHHHHHHCCCCCCEEEECCCCCEEECCCCHHH
VKKEMPILEDCLGGFAVLVSKNDGINPILRTDLVGKHTVGTGSSPQAVISSLVTDPLDKA
HHHHCCHHHHHCCCEEEEEECCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCHHHC
GLKITDVDKYSVEMQNPDITKPAGAGDVPQANYKMIGALGVKKKHIEKKELKDFIQNHGM
CCEEEECCCEEEEECCCCCCCCCCCCCCCCCCCEEEEHHCCHHHHCCHHHHHHHHHHCCC
SGWAPTQGHIPSGVPYIGFARNDLTEGNLNRVMVVGKGSLFLGRMTNLFDGVSIIIERNT
CCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCEEEEEECCC
GYKEEEKGISEDKVRKIIAESIKKLASQLVEE
CCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8223622; 1587286 [H]