| Definition | Legionella pneumophila str. Corby chromosome, complete genome. |
|---|---|
| Accession | NC_009494 |
| Length | 3,576,470 |
Click here to switch to the map view.
The map label for this gene is xseA [H]
Identifier: 148360529
GI number: 148360529
Start: 1009177
End: 1010508
Strand: Reverse
Name: xseA [H]
Synonym: LPC_2470
Alternate gene names: 148360529
Gene position: 1010508-1009177 (Counterclockwise)
Preceding gene: 148360523
Following gene: 148360530
Centisome position: 28.25
GC content: 39.71
Gene sequence:
>1332_bases ATGAGTAGTCAATTGCCAATACTGACCGTGAGTCAGCTAAATAGACAAGTGAAAGGTTTTCTCGAGAATGAAATAGGCCT TGTGCATGTCGAAGGCGAAATCTCTAACTTAAGCAAACCTTCTTCAGGACATTACTATTTCACCCTGAAAGACAGCACAG CGCAAATTCGTTGCGCCTTTTTTAAAAATCGACATTCCAGTTCTCTGCTTAGAAATTTTAATGATGGTCAACAAATTGTT GCCAGTGGCAAATTAAGTCTGTATGAAGCTCGGGGAGAATATCAGCTTATTGTTGAAGAGATAGTTGAAGCAGGAATGGG GGTTCTCTATCAACGATTTGAAGAGTTAAAAATCAAACTAGCCAGCGAAGGTTTATTCAATCCTGAGAGAAAAAAAACAC TGCCCAGAATACCAGAAACGATTGGCATCATTACATCACCTACCGGGGCAGCTATCCAGGACATTCTCTCGACTCTGGCT CGTCGATTCCCAATAGCCAGAGTTATTATTTATCCAAGTGAGGTTCAAGGGCAAACCGCCCCTCAACAACTAGTCAATGC CTTAAAACTGGCTAATGCCCATAAACGATGCCAGGTTCTCATCCTAGCGCGCGGCGGTGGCAGCATTGAAGACTTGTGGG CCTTTAATGATGAATACCTTGCTCGACAAATTGCAATCAGCGAAATTCCTGTTGTTTCTGGTATTGGCCATGAAACAGAT TTCACAATTGCAGATTTTGTAGCAGATTATCGTGCGGAAACGCCTACTGCTGCCGCTACGGCTGTTACTCCAAACTGCAT CGAATTATTCAATATTCTTGATACGGCTATTTATCGATTGCATGATGCCATCATCAGACTAATTAAAGGGTTGCAATTAA AGCTCAATCATTTGATAGATAAAATTGCCTCACCCAGGCAAGCTATCTCAACATACTGGCAAACTCTGGATTATCTGGAG AGACAGTTAATATCTGCTATGACTCAATTTATTAACTTAAACATTAACAAGGTGAATATTTTTTCAACACAATTGCAAGC TAGCAATCCAAAAATACAAATTGAACGAACTAAAATCCAACTACAACAATTAATAATGCAATTAACCCAAGAGATCCGGA TAAAAGTAAACCAATTAAAAAATCAACTATCCACTAATCTTTCCACTTTGCATGCTGTAAGCCCCTTGGCTACACTAGAT AGAGGTTATGCTATTGTGAGTAAAAACCAAAGAATACTCTTTGCTGCCCAACAGGCACAAATTGGAGATACTATCAATAT CCGTTTAGCAAAAGGAAGTCTTGCTTGTGAGGTTACTCAAATTAAGGATTGA
Upstream 100 bases:
>100_bases TATAACCTTAAATGAAATAACATCTCACTACAATATAATTTTGTTTCTTTAATTAGTTATTGTTATTAACAACCTTTTGA TTTGATGGATTTTTACCACC
Downstream 100 bases:
>100_bases CTAAAATTATGAAGAAACTATTACATTCAGTTGCCTGCCTATTGATATTAATAAGCTCAGCAAAACTATCCTATGGCCTG GCTCTACCAGAAAATCATTC
Product: exodeoxyribonuclease VII large subunit
Products: NA
Alternate protein names: Exodeoxyribonuclease VII large subunit; Exonuclease VII large subunit [H]
Number of amino acids: Translated: 443; Mature: 442
Protein sequence:
>443_residues MSSQLPILTVSQLNRQVKGFLENEIGLVHVEGEISNLSKPSSGHYYFTLKDSTAQIRCAFFKNRHSSSLLRNFNDGQQIV ASGKLSLYEARGEYQLIVEEIVEAGMGVLYQRFEELKIKLASEGLFNPERKKTLPRIPETIGIITSPTGAAIQDILSTLA RRFPIARVIIYPSEVQGQTAPQQLVNALKLANAHKRCQVLILARGGGSIEDLWAFNDEYLARQIAISEIPVVSGIGHETD FTIADFVADYRAETPTAAATAVTPNCIELFNILDTAIYRLHDAIIRLIKGLQLKLNHLIDKIASPRQAISTYWQTLDYLE RQLISAMTQFINLNINKVNIFSTQLQASNPKIQIERTKIQLQQLIMQLTQEIRIKVNQLKNQLSTNLSTLHAVSPLATLD RGYAIVSKNQRILFAAQQAQIGDTINIRLAKGSLACEVTQIKD
Sequences:
>Translated_443_residues MSSQLPILTVSQLNRQVKGFLENEIGLVHVEGEISNLSKPSSGHYYFTLKDSTAQIRCAFFKNRHSSSLLRNFNDGQQIV ASGKLSLYEARGEYQLIVEEIVEAGMGVLYQRFEELKIKLASEGLFNPERKKTLPRIPETIGIITSPTGAAIQDILSTLA RRFPIARVIIYPSEVQGQTAPQQLVNALKLANAHKRCQVLILARGGGSIEDLWAFNDEYLARQIAISEIPVVSGIGHETD FTIADFVADYRAETPTAAATAVTPNCIELFNILDTAIYRLHDAIIRLIKGLQLKLNHLIDKIASPRQAISTYWQTLDYLE RQLISAMTQFINLNINKVNIFSTQLQASNPKIQIERTKIQLQQLIMQLTQEIRIKVNQLKNQLSTNLSTLHAVSPLATLD RGYAIVSKNQRILFAAQQAQIGDTINIRLAKGSLACEVTQIKD >Mature_442_residues SSQLPILTVSQLNRQVKGFLENEIGLVHVEGEISNLSKPSSGHYYFTLKDSTAQIRCAFFKNRHSSSLLRNFNDGQQIVA SGKLSLYEARGEYQLIVEEIVEAGMGVLYQRFEELKIKLASEGLFNPERKKTLPRIPETIGIITSPTGAAIQDILSTLAR RFPIARVIIYPSEVQGQTAPQQLVNALKLANAHKRCQVLILARGGGSIEDLWAFNDEYLARQIAISEIPVVSGIGHETDF TIADFVADYRAETPTAAATAVTPNCIELFNILDTAIYRLHDAIIRLIKGLQLKLNHLIDKIASPRQAISTYWQTLDYLER QLISAMTQFINLNINKVNIFSTQLQASNPKIQIERTKIQLQQLIMQLTQEIRIKVNQLKNQLSTNLSTLHAVSPLATLDR GYAIVSKNQRILFAAQQAQIGDTINIRLAKGSLACEVTQIKD
Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides [H]
COG id: COG1570
COG function: function code L; Exonuclease VII, large subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the xseA family [H]
Homologues:
Organism=Escherichia coli, GI1788856, Length=446, Percent_Identity=42.152466367713, Blast_Score=351, Evalue=4e-98,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003753 - InterPro: IPR020579 - InterPro: IPR004365 [H]
Pfam domain/function: PF02601 Exonuc_VII_L; PF01336 tRNA_anti [H]
EC number: =3.1.11.6 [H]
Molecular weight: Translated: 49447; Mature: 49316
Theoretical pI: Translated: 9.20; Mature: 9.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSQLPILTVSQLNRQVKGFLENEIGLVHVEGEISNLSKPSSGHYYFTLKDSTAQIRCAF CCCCCCEEEHHHHHHHHHHHHCCCCEEEEEECCHHCCCCCCCCEEEEEEECCCCEEEEEE FKNRHSSSLLRNFNDGQQIVASGKLSLYEARGEYQLIVEEIVEAGMGVLYQRFEELKIKL HHCCCHHHHHHCCCCCHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ASEGLFNPERKKTLPRIPETIGIITSPTGAAIQDILSTLARRFPIARVIIYPSEVQGQTA HCCCCCCCHHHCCCCCCCHHHCEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCC PQQLVNALKLANAHKRCQVLILARGGGSIEDLWAFNDEYLARQIAISEIPVVSGIGHETD HHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHCCCHHHHHHHHHHHHCCEECCCCCCCC FTIADFVADYRAETPTAAATAVTPNCIELFNILDTAIYRLHDAIIRLIKGLQLKLNHLID CHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KIASPRQAISTYWQTLDYLERQLISAMTQFINLNINKVNIFSTQLQASNPKIQIERTKIQ HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCEEEEEHHHHH LQQLIMQLTQEIRIKVNQLKNQLSTNLSTLHAVSPLATLDRGYAIVSKNQRILFAAQQAQ HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHCCCEEEEECCCEEEEEECCCC IGDTINIRLAKGSLACEVTQIKD CCCEEEEEEECCCEEEEEEECCC >Mature Secondary Structure SSQLPILTVSQLNRQVKGFLENEIGLVHVEGEISNLSKPSSGHYYFTLKDSTAQIRCAF CCCCCEEEHHHHHHHHHHHHCCCCEEEEEECCHHCCCCCCCCEEEEEEECCCCEEEEEE FKNRHSSSLLRNFNDGQQIVASGKLSLYEARGEYQLIVEEIVEAGMGVLYQRFEELKIKL HHCCCHHHHHHCCCCCHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ASEGLFNPERKKTLPRIPETIGIITSPTGAAIQDILSTLARRFPIARVIIYPSEVQGQTA HCCCCCCCHHHCCCCCCCHHHCEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCC PQQLVNALKLANAHKRCQVLILARGGGSIEDLWAFNDEYLARQIAISEIPVVSGIGHETD HHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHCCCHHHHHHHHHHHHCCEECCCCCCCC FTIADFVADYRAETPTAAATAVTPNCIELFNILDTAIYRLHDAIIRLIKGLQLKLNHLID CHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KIASPRQAISTYWQTLDYLERQLISAMTQFINLNINKVNIFSTQLQASNPKIQIERTKIQ HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCEEEEEHHHHH LQQLIMQLTQEIRIKVNQLKNQLSTNLSTLHAVSPLATLDRGYAIVSKNQRILFAAQQAQ HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHCCCEEEEECCCEEEEEECCCC IGDTINIRLAKGSLACEVTQIKD CCCEEEEEEECCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA