Click here to switch to the map view.

The map label for this gene is yebA [H]

Identifier: 148360530

GI number: 148360530

Start: 1008266

End: 1009168

Strand: Reverse

Name: yebA [H]

Synonym: LPC_2472

Alternate gene names: 148360530

Gene position: 1009168-1008266 (Counterclockwise)

Preceding gene: 148360529

Following gene: 148360531

Centisome position: 28.22

GC content: 38.65

Gene sequence:

>903_bases
ATGAAGAAACTATTACATTCAGTTGCCTGCCTATTGATATTAATAAGCTCAGCAAAACTATCCTATGGCCTGGCTCTACC
AGAAAATCATTCTGTCAATGGGGGACTGACTATTATTCCTATTGATTTCAATCAGAAGCCTGAAGCCTATTTCGAGGGGA
AACGCATACCGGTTCTTCCCAGTACCCAACCCCGACAATGGTTATTAATCGTTGCAATCCCGCTTAAAAATACCAACTCT
GTTCAATACATCAACGTGACAAAACCCATCAAAGCATCTATTCCCTTTCATGTTAGTGAAAAATTTTACAGTACACAATT
TTTAAATATAAAAGATATCAGTAAAGTAGATCCTCAACCCGAAGATTTAATCCGGATTGAAAAAGAAACCAAAAAATTAA
CCCAAATTTTTGCTAATTACTCCAATACCAATCCATTTGAGAAACAATTCACAGCACCACTGAGAGGACCTATAACCAGT
TTATTTGGCCTGAAGAGAGTTTATAATAAACAGCCAAGAGATCCGCATTCTGGATTGGACATCGCCGCTAACGAGGGGAA
ACCTGTGTATGCTGTAAATCAGGGAGTTGTAGCAGATACCGGTGATTATTTTTTCACAGGCAATACGGTTATCCTTGATC
ATGGCATGGGAGTATTCTCGGTTTATGCTCATCTTAGCAAAATTCTGGTTAAAACAGGAGAAACAGTCAAACAAGGCCAA
GAGCTTGGATTAGTTGGTATGACAGGAAGAGTAACAGGCCCCCATCTCCACTGGACTATGGTAGTTAACCAAACTTTGGT
TGAACCTTTACTTTTTGTACCGTTTCGCAAAATCACAGTTACACCAGTTATACCAGATAAAAAATCAAACAAATCAACAC
AAGATGCAACGGTAAAATCATGA

Upstream 100 bases:

>100_bases
TTGCTGCCCAACAGGCACAAATTGGAGATACTATCAATATCCGTTTAGCAAAAGGAAGTCTTGCTTGTGAGGTTACTCAA
ATTAAGGATTGACTAAAATT

Downstream 100 bases:

>100_bases
TTAACGAATTAACGGCCAGTTTGAATATGATTGTCACTCAGACACAAAATAACCTGAAAATTTTGGGAGTAATACTACTA
ATTCCCTGGTCAATATTTTT

Product: M23/M37 family transporter peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MKKLLHSVACLLILISSAKLSYGLALPENHSVNGGLTIIPIDFNQKPEAYFEGKRIPVLPSTQPRQWLLIVAIPLKNTNS
VQYINVTKPIKASIPFHVSEKFYSTQFLNIKDISKVDPQPEDLIRIEKETKKLTQIFANYSNTNPFEKQFTAPLRGPITS
LFGLKRVYNKQPRDPHSGLDIAANEGKPVYAVNQGVVADTGDYFFTGNTVILDHGMGVFSVYAHLSKILVKTGETVKQGQ
ELGLVGMTGRVTGPHLHWTMVVNQTLVEPLLFVPFRKITVTPVIPDKKSNKSTQDATVKS

Sequences:

>Translated_300_residues
MKKLLHSVACLLILISSAKLSYGLALPENHSVNGGLTIIPIDFNQKPEAYFEGKRIPVLPSTQPRQWLLIVAIPLKNTNS
VQYINVTKPIKASIPFHVSEKFYSTQFLNIKDISKVDPQPEDLIRIEKETKKLTQIFANYSNTNPFEKQFTAPLRGPITS
LFGLKRVYNKQPRDPHSGLDIAANEGKPVYAVNQGVVADTGDYFFTGNTVILDHGMGVFSVYAHLSKILVKTGETVKQGQ
ELGLVGMTGRVTGPHLHWTMVVNQTLVEPLLFVPFRKITVTPVIPDKKSNKSTQDATVKS
>Mature_300_residues
MKKLLHSVACLLILISSAKLSYGLALPENHSVNGGLTIIPIDFNQKPEAYFEGKRIPVLPSTQPRQWLLIVAIPLKNTNS
VQYINVTKPIKASIPFHVSEKFYSTQFLNIKDISKVDPQPEDLIRIEKETKKLTQIFANYSNTNPFEKQFTAPLRGPITS
LFGLKRVYNKQPRDPHSGLDIAANEGKPVYAVNQGVVADTGDYFFTGNTVILDHGMGVFSVYAHLSKILVKTGETVKQGQ
ELGLVGMTGRVTGPHLHWTMVVNQTLVEPLLFVPFRKITVTPVIPDKKSNKSTQDATVKS

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=96, Percent_Identity=44.7916666666667, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 33305; Mature: 33305

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLLHSVACLLILISSAKLSYGLALPENHSVNGGLTIIPIDFNQKPEAYFEGKRIPVLP
CHHHHHHHHHHHHHHHCCHHEEEEECCCCCCCCCCEEEEEECCCCCCHHHCCCCCCCCCC
STQPRQWLLIVAIPLKNTNSVQYINVTKPIKASIPFHVSEKFYSTQFLNIKDISKVDPQP
CCCCCEEEEEEEEECCCCCCEEEEEECCCEECCCCEEECCHHHCEEEECHHCHHHCCCCH
EDLIRIEKETKKLTQIFANYSNTNPFEKQFTAPLRGPITSLFGLKRVYNKQPRDPHSGLD
HHHEEHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCE
IAANEGKPVYAVNQGVVADTGDYFFTGNTVILDHGMGVFSVYAHLSKILVKTGETVKQGQ
EEECCCCEEEEECCCEEEECCCEEEECCEEEEECCCCHHHHHHHHHHHHHHCCCHHHCCC
ELGLVGMTGRVTGPHLHWTMVVNQTLVEPLLFVPFRKITVTPVIPDKKSNKSTQDATVKS
CCCEEEECCCCCCCCEEEEEEECHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKKLLHSVACLLILISSAKLSYGLALPENHSVNGGLTIIPIDFNQKPEAYFEGKRIPVLP
CHHHHHHHHHHHHHHHCCHHEEEEECCCCCCCCCCEEEEEECCCCCCHHHCCCCCCCCCC
STQPRQWLLIVAIPLKNTNSVQYINVTKPIKASIPFHVSEKFYSTQFLNIKDISKVDPQP
CCCCCEEEEEEEEECCCCCCEEEEEECCCEECCCCEEECCHHHCEEEECHHCHHHCCCCH
EDLIRIEKETKKLTQIFANYSNTNPFEKQFTAPLRGPITSLFGLKRVYNKQPRDPHSGLD
HHHEEHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCE
IAANEGKPVYAVNQGVVADTGDYFFTGNTVILDHGMGVFSVYAHLSKILVKTGETVKQGQ
EEECCCCEEEEECCCEEEECCCEEEECCEEEEECCCCHHHHHHHHHHHHHHCCCHHHCCC
ELGLVGMTGRVTGPHLHWTMVVNQTLVEPLLFVPFRKITVTPVIPDKKSNKSTQDATVKS
CCCEEEECCCCCCCCEEEEEEECHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]