Definition Legionella pneumophila str. Corby chromosome, complete genome.
Accession NC_009494
Length 3,576,470

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The map label for this gene is fis [H]

Identifier: 148359287

GI number: 148359287

Start: 2025721

End: 2026008

Strand: Reverse

Name: fis [H]

Synonym: LPC_1183

Alternate gene names: 148359287

Gene position: 2026008-2025721 (Counterclockwise)

Preceding gene: 148359288

Following gene: 148359279

Centisome position: 56.65

GC content: 36.46

Gene sequence:

>288_bases
ATGAGTGCAGTTATGCAACAAGTGACACAAGGTAACGATGCCTTGTCACATCAAGTGATTAGTGCAGTTAAAGGTTATTT
AACAAGTGTCGGTAGTAAAGATGCTAATTTAAACTTATATCAATTGATTGTTGAGGAAGTAGAAGCCCCTTTATTCCGGA
CTGTTATGGAATTAACTCGCTATAATCAATCAAAAGCTGCTCGAGTGCTTGGTGTAAGTCGTGGTACTTTGCGCACTAAA
TTAAAGCGTTATTTTGATGATGAATTCATTGGTACTCGTGATTTTTAA

Upstream 100 bases:

>100_bases
ACTCTTTGGGATATTTGATATTATATCGGTCATGGTGTTAGAGCCAAATTAATGTGCTGGACATGATTTATGTTCATTAA
ATTTGTATTAGGAGATTAAA

Downstream 100 bases:

>100_bases
TTCAGTTATATAGCTAATACTTTCCAAGTTCAGTTATTTTTCGCGGTATTCTAATAGAAATTCATCGTTAATTATGGCCT
TTGCCTGGGCACTCTGCTAA

Product: Fis transcriptional activator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 95; Mature: 94

Protein sequence:

>95_residues
MSAVMQQVTQGNDALSHQVISAVKGYLTSVGSKDANLNLYQLIVEEVEAPLFRTVMELTRYNQSKAARVLGVSRGTLRTK
LKRYFDDEFIGTRDF

Sequences:

>Translated_95_residues
MSAVMQQVTQGNDALSHQVISAVKGYLTSVGSKDANLNLYQLIVEEVEAPLFRTVMELTRYNQSKAARVLGVSRGTLRTK
LKRYFDDEFIGTRDF
>Mature_94_residues
SAVMQQVTQGNDALSHQVISAVKGYLTSVGSKDANLNLYQLIVEEVEAPLFRTVMELTRYNQSKAARVLGVSRGTLRTKL
KRYFDDEFIGTRDF

Specific function: Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters [H]

COG id: COG2901

COG function: function code KL; Factor for inversion stimulation Fis, transcriptional activator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transcriptional regulatory fis family [H]

Homologues:

Organism=Escherichia coli, GI1789661, Length=78, Percent_Identity=47.4358974358974, Blast_Score=70, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005412
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197 [H]

Pfam domain/function: PF02954 HTH_8 [H]

EC number: NA

Molecular weight: Translated: 10687; Mature: 10556

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAVMQQVTQGNDALSHQVISAVKGYLTSVGSKDANLNLYQLIVEEVEAPLFRTVMELTR
CHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
YNQSKAARVLGVSRGTLRTKLKRYFDDEFIGTRDF
CCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SAVMQQVTQGNDALSHQVISAVKGYLTSVGSKDANLNLYQLIVEEVEAPLFRTVMELTR
HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
YNQSKAARVLGVSRGTLRTKLKRYFDDEFIGTRDF
CCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA