Definition | Legionella pneumophila str. Corby chromosome, complete genome. |
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Accession | NC_009494 |
Length | 3,576,470 |
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The map label for this gene is fis [H]
Identifier: 148359287
GI number: 148359287
Start: 2025721
End: 2026008
Strand: Reverse
Name: fis [H]
Synonym: LPC_1183
Alternate gene names: 148359287
Gene position: 2026008-2025721 (Counterclockwise)
Preceding gene: 148359288
Following gene: 148359279
Centisome position: 56.65
GC content: 36.46
Gene sequence:
>288_bases ATGAGTGCAGTTATGCAACAAGTGACACAAGGTAACGATGCCTTGTCACATCAAGTGATTAGTGCAGTTAAAGGTTATTT AACAAGTGTCGGTAGTAAAGATGCTAATTTAAACTTATATCAATTGATTGTTGAGGAAGTAGAAGCCCCTTTATTCCGGA CTGTTATGGAATTAACTCGCTATAATCAATCAAAAGCTGCTCGAGTGCTTGGTGTAAGTCGTGGTACTTTGCGCACTAAA TTAAAGCGTTATTTTGATGATGAATTCATTGGTACTCGTGATTTTTAA
Upstream 100 bases:
>100_bases ACTCTTTGGGATATTTGATATTATATCGGTCATGGTGTTAGAGCCAAATTAATGTGCTGGACATGATTTATGTTCATTAA ATTTGTATTAGGAGATTAAA
Downstream 100 bases:
>100_bases TTCAGTTATATAGCTAATACTTTCCAAGTTCAGTTATTTTTCGCGGTATTCTAATAGAAATTCATCGTTAATTATGGCCT TTGCCTGGGCACTCTGCTAA
Product: Fis transcriptional activator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 95; Mature: 94
Protein sequence:
>95_residues MSAVMQQVTQGNDALSHQVISAVKGYLTSVGSKDANLNLYQLIVEEVEAPLFRTVMELTRYNQSKAARVLGVSRGTLRTK LKRYFDDEFIGTRDF
Sequences:
>Translated_95_residues MSAVMQQVTQGNDALSHQVISAVKGYLTSVGSKDANLNLYQLIVEEVEAPLFRTVMELTRYNQSKAARVLGVSRGTLRTK LKRYFDDEFIGTRDF >Mature_94_residues SAVMQQVTQGNDALSHQVISAVKGYLTSVGSKDANLNLYQLIVEEVEAPLFRTVMELTRYNQSKAARVLGVSRGTLRTKL KRYFDDEFIGTRDF
Specific function: Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters [H]
COG id: COG2901
COG function: function code KL; Factor for inversion stimulation Fis, transcriptional activator
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transcriptional regulatory fis family [H]
Homologues:
Organism=Escherichia coli, GI1789661, Length=78, Percent_Identity=47.4358974358974, Blast_Score=70, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005412 - InterPro: IPR020441 - InterPro: IPR009057 - InterPro: IPR002197 [H]
Pfam domain/function: PF02954 HTH_8 [H]
EC number: NA
Molecular weight: Translated: 10687; Mature: 10556
Theoretical pI: Translated: 9.53; Mature: 9.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAVMQQVTQGNDALSHQVISAVKGYLTSVGSKDANLNLYQLIVEEVEAPLFRTVMELTR CHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH YNQSKAARVLGVSRGTLRTKLKRYFDDEFIGTRDF CCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SAVMQQVTQGNDALSHQVISAVKGYLTSVGSKDANLNLYQLIVEEVEAPLFRTVMELTR HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH YNQSKAARVLGVSRGTLRTKLKRYFDDEFIGTRDF CCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA