Definition | Legionella pneumophila str. Corby chromosome, complete genome. |
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Accession | NC_009494 |
Length | 3,576,470 |
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The map label for this gene is yfcX [H]
Identifier: 148359133
GI number: 148359133
Start: 1829420
End: 1831438
Strand: Reverse
Name: yfcX [H]
Synonym: LPC_1023
Alternate gene names: 148359133
Gene position: 1831438-1829420 (Counterclockwise)
Preceding gene: 148359134
Following gene: 148359132
Centisome position: 51.21
GC content: 40.37
Gene sequence:
>2019_bases ATGAATAATTATAAACATTGGGATTTACAACGAGACAAAGATGCCATTCTGTGGCTTGGATTAAATAGAAGAGATGCTGC TGTTAATAGTATTAATGAAGAAGTCTTGGATGAGTTAAACAGCTTGCTGCATGAAATATCGCATGATAAAAAAGCAATGG GATTAATTATTTATTCGCTCAAGGAAAAAGGGTTTATTGCGGGTGCTGATGTTAACGCTTTTTCACAATTTGAGAGCTCT TCACAAGCGGTTGATTTTTTGCAGAAAGGACAAACTGTATTTGCCCGGTTGCAAGCTTTATCAATTCCAAGTGTCGCAAT GATCGATGGTTTTTGCATGGGCGGTGGTTATGAGTTAGCTTTAGCTTGCACTTACCGAATCGCAACGGATGACAAAGACA CACGTATTGGTTTGCCTGAAGTAATGCTGGGTATTCATCCAGGGTGGGGCGGTACTGTGCGTTTGCCTCAGTTAATAGGT GGTTTTAAAGCTTTATCACAAGTCATATTAACCGGTAGTGCAATACCTGCTGCAAAAGCTAAAAACCTCGGCATGATTGA TGAGGTAGTACCTGTTCGTCAGCTAAGAAGGGCTGCTGTTTATTTCATAAAGAATAAACCACCACGACACAGGGCATCAT TTATTGAAAGTTTAACGAATAGCTCTCTGCTTAGAAAAGCTATCGCTTATTTACTGCGTTATAACGTAGCCAAGCGAGTT CGAAAAGAACATTATCCTGCACCATATGCCGTGATTGACCTGTGGGAAAAAGAAGGGGGAGTGGGAGAGAGGGCTTATCT TAAAGAAGTGGACTCTATAGAAAAACTTGTATCCCAAAATGATACCGCCAAGAATCTTATCAGAGCATTTTTATTGCGTG AGCGATTAAAAGGGTTTGCCAAAGACAGCCACTTCAAAGCGGCTCATGTTCATGTGATTGGAGCTGGAGTTATGGGAGGG GATATCGCGGCCTGGTGTGCTTTGCGAGGTCTTCAGGTCACATTACAGGATAAATCTTATGAACAAATTGCCCCTGCAAT AGGGAGAGCACATAAACTTTATAGTAAAAAACTGCGTAAGCCGCGATTGATCCAGGCAGCAATGGATAGATTAATCGCAG ACCCCGAAGGGCATGGGATAAAACGAGCAGATGTCATTATTGAGGCTGTTTTCGAAAATTTAGCTGTTAAACAGGAAATA ATGAAAACTGTGGAAAAAAATGCCAAAAAAGATGCGATCATCGCGACAAACACCTCTAGTATCCCACTTGATGAAATCAG TAGTGTAATGAGTAAACCAGAACGCTTGGTAGGCATTCATTTCTTTAATCCTGTAGCTAAAATGGATTTGGTAGAAATAG TCAGCAGCTCATCTACTGCAAAAAAAATTCAGCAGAGCTCTTGCGCGTTCGTCAATCAAATTGGCAAATTGCCTTTGCCT GTCAAATCAAGCCCTGGGTTTTTAATAAACAGAGTGCTCATGCCTTATCTAATGGAGTGCGTACAGTTATTGGATGAAGG ATATAGTGCGGAGACAATAGATGAGGCCGCATTACAGTTTGGTATGTTTATGGGCCCTGTTGAACTGGCTGATACCGTAG GAATGGATGTTTGTCTTGCTGTGGCCGAAAATCTGACCAGTCACTTTGGTGGTACTATTCCACAAAGATTACGTGACTTA GTAAAAGAAGGTAAGCTAGGCAGAAAAACTGGAGAAGGTTTTTATAAATATAAAAATGGAAAAGTAATTAAGAAAAAGGC TCCGTCACATGTTGATAAAACCATTGCAGACAGATTAATTTTACGAATGGTGAATGAATCTGCAGCTTGTATACGTGAGA AAGTGGTTGAAGATTCTGACTTGTTGGATGCTGGAATGATCTTTGCCACAGGTTTTGCTCCATTCCGTGGAGGGCCTATG AATTACGCAAATGATTTTGGTAAAGATAAACTGGAAACTTTATTTAAAACATTTGAGTCTAAATACGGCGAACGTTTTAA GGTAGATACCAGCTTATAA
Upstream 100 bases:
>100_bases TTAGAGCAAAGAAATGAGTCGCGAGGTATGGCAGCAATTTGTATCGGAGGTGGTCAGGGAGGAGCTATGTATCTTGAACG AGTTACTGAGGTGAAAGGAC
Downstream 100 bases:
>100_bases TTTCTCTGCAAGGTAAGACGTTATGGTTTTACCTTGCTTTTTAGAGAGAAAAGCATCATATGGAGCAAAAATCAAAATCT ATAATAAGAGTTTGGTATTT
Product: enoyl CoA hydratase
Products: NA
Alternate protein names: Enoyl-CoA hydratase/3-hydroxybutyryl-CoA epimerase; 3-hydroxyacyl-CoA dehydrogenase [H]
Number of amino acids: Translated: 672; Mature: 672
Protein sequence:
>672_residues MNNYKHWDLQRDKDAILWLGLNRRDAAVNSINEEVLDELNSLLHEISHDKKAMGLIIYSLKEKGFIAGADVNAFSQFESS SQAVDFLQKGQTVFARLQALSIPSVAMIDGFCMGGGYELALACTYRIATDDKDTRIGLPEVMLGIHPGWGGTVRLPQLIG GFKALSQVILTGSAIPAAKAKNLGMIDEVVPVRQLRRAAVYFIKNKPPRHRASFIESLTNSSLLRKAIAYLLRYNVAKRV RKEHYPAPYAVIDLWEKEGGVGERAYLKEVDSIEKLVSQNDTAKNLIRAFLLRERLKGFAKDSHFKAAHVHVIGAGVMGG DIAAWCALRGLQVTLQDKSYEQIAPAIGRAHKLYSKKLRKPRLIQAAMDRLIADPEGHGIKRADVIIEAVFENLAVKQEI MKTVEKNAKKDAIIATNTSSIPLDEISSVMSKPERLVGIHFFNPVAKMDLVEIVSSSSTAKKIQQSSCAFVNQIGKLPLP VKSSPGFLINRVLMPYLMECVQLLDEGYSAETIDEAALQFGMFMGPVELADTVGMDVCLAVAENLTSHFGGTIPQRLRDL VKEGKLGRKTGEGFYKYKNGKVIKKKAPSHVDKTIADRLILRMVNESAACIREKVVEDSDLLDAGMIFATGFAPFRGGPM NYANDFGKDKLETLFKTFESKYGERFKVDTSL
Sequences:
>Translated_672_residues MNNYKHWDLQRDKDAILWLGLNRRDAAVNSINEEVLDELNSLLHEISHDKKAMGLIIYSLKEKGFIAGADVNAFSQFESS SQAVDFLQKGQTVFARLQALSIPSVAMIDGFCMGGGYELALACTYRIATDDKDTRIGLPEVMLGIHPGWGGTVRLPQLIG GFKALSQVILTGSAIPAAKAKNLGMIDEVVPVRQLRRAAVYFIKNKPPRHRASFIESLTNSSLLRKAIAYLLRYNVAKRV RKEHYPAPYAVIDLWEKEGGVGERAYLKEVDSIEKLVSQNDTAKNLIRAFLLRERLKGFAKDSHFKAAHVHVIGAGVMGG DIAAWCALRGLQVTLQDKSYEQIAPAIGRAHKLYSKKLRKPRLIQAAMDRLIADPEGHGIKRADVIIEAVFENLAVKQEI MKTVEKNAKKDAIIATNTSSIPLDEISSVMSKPERLVGIHFFNPVAKMDLVEIVSSSSTAKKIQQSSCAFVNQIGKLPLP VKSSPGFLINRVLMPYLMECVQLLDEGYSAETIDEAALQFGMFMGPVELADTVGMDVCLAVAENLTSHFGGTIPQRLRDL VKEGKLGRKTGEGFYKYKNGKVIKKKAPSHVDKTIADRLILRMVNESAACIREKVVEDSDLLDAGMIFATGFAPFRGGPM NYANDFGKDKLETLFKTFESKYGERFKVDTSL >Mature_672_residues MNNYKHWDLQRDKDAILWLGLNRRDAAVNSINEEVLDELNSLLHEISHDKKAMGLIIYSLKEKGFIAGADVNAFSQFESS SQAVDFLQKGQTVFARLQALSIPSVAMIDGFCMGGGYELALACTYRIATDDKDTRIGLPEVMLGIHPGWGGTVRLPQLIG GFKALSQVILTGSAIPAAKAKNLGMIDEVVPVRQLRRAAVYFIKNKPPRHRASFIESLTNSSLLRKAIAYLLRYNVAKRV RKEHYPAPYAVIDLWEKEGGVGERAYLKEVDSIEKLVSQNDTAKNLIRAFLLRERLKGFAKDSHFKAAHVHVIGAGVMGG DIAAWCALRGLQVTLQDKSYEQIAPAIGRAHKLYSKKLRKPRLIQAAMDRLIADPEGHGIKRADVIIEAVFENLAVKQEI MKTVEKNAKKDAIIATNTSSIPLDEISSVMSKPERLVGIHFFNPVAKMDLVEIVSSSSTAKKIQQSSCAFVNQIGKLPLP VKSSPGFLINRVLMPYLMECVQLLDEGYSAETIDEAALQFGMFMGPVELADTVGMDVCLAVAENLTSHFGGTIPQRLRDL VKEGKLGRKTGEGFYKYKNGKVIKKKAPSHVDKTIADRLILRMVNESAACIREKVVEDSDLLDAGMIFATGFAPFRGGPM NYANDFGKDKLETLFKTFESKYGERFKVDTSL
Specific function: Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities [H]
COG id: COG1250
COG function: function code I; 3-hydroxyacyl-CoA dehydrogenase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: In the central section; belongs to the 3-hydroxyacyl- CoA dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI20127408, Length=695, Percent_Identity=32.5179856115108, Blast_Score=367, Evalue=1e-101, Organism=Homo sapiens, GI68989263, Length=705, Percent_Identity=28.2269503546099, Blast_Score=210, Evalue=4e-54, Organism=Homo sapiens, GI261878539, Length=610, Percent_Identity=28.3606557377049, Blast_Score=187, Evalue=2e-47, Organism=Homo sapiens, GI296179429, Length=294, Percent_Identity=36.734693877551, Blast_Score=173, Evalue=6e-43, Organism=Homo sapiens, GI296179427, Length=312, Percent_Identity=34.6153846153846, Blast_Score=165, Evalue=1e-40, Organism=Homo sapiens, GI194097323, Length=233, Percent_Identity=28.755364806867, Blast_Score=91, Evalue=4e-18, Organism=Homo sapiens, GI213417737, Length=213, Percent_Identity=30.0469483568075, Blast_Score=88, Evalue=3e-17, Organism=Homo sapiens, GI157694516, Length=213, Percent_Identity=30.0469483568075, Blast_Score=88, Evalue=3e-17, Organism=Homo sapiens, GI157694520, Length=176, Percent_Identity=31.25, Blast_Score=82, Evalue=1e-15, Organism=Homo sapiens, GI62530384, Length=212, Percent_Identity=31.1320754716981, Blast_Score=80, Evalue=8e-15, Organism=Homo sapiens, GI4502327, Length=186, Percent_Identity=34.9462365591398, Blast_Score=75, Evalue=2e-13, Organism=Homo sapiens, GI295842266, Length=211, Percent_Identity=26.5402843601896, Blast_Score=66, Evalue=9e-11, Organism=Escherichia coli, GI1788682, Length=678, Percent_Identity=31.1209439528024, Blast_Score=336, Evalue=3e-93, Organism=Escherichia coli, GI1790281, Length=675, Percent_Identity=29.3333333333333, Blast_Score=289, Evalue=3e-79, Organism=Escherichia coli, GI1787661, Length=279, Percent_Identity=36.2007168458781, Blast_Score=167, Evalue=2e-42, Organism=Escherichia coli, GI1787659, Length=176, Percent_Identity=35.2272727272727, Blast_Score=99, Evalue=1e-21, Organism=Escherichia coli, GI221142681, Length=237, Percent_Identity=29.1139240506329, Blast_Score=79, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17508951, Length=687, Percent_Identity=31.7321688500728, Blast_Score=314, Evalue=9e-86, Organism=Caenorhabditis elegans, GI17508953, Length=687, Percent_Identity=31.7321688500728, Blast_Score=314, Evalue=1e-85, Organism=Caenorhabditis elegans, GI17558304, Length=683, Percent_Identity=29.7218155197657, Blast_Score=310, Evalue=1e-84, Organism=Caenorhabditis elegans, GI25144276, Length=603, Percent_Identity=32.1724709784411, Blast_Score=278, Evalue=8e-75, Organism=Caenorhabditis elegans, GI71985930, Length=379, Percent_Identity=29.5514511873351, Blast_Score=171, Evalue=1e-42, Organism=Caenorhabditis elegans, GI71985923, Length=357, Percent_Identity=30.812324929972, Blast_Score=171, Evalue=2e-42, Organism=Caenorhabditis elegans, GI17553560, Length=289, Percent_Identity=35.9861591695502, Blast_Score=169, Evalue=4e-42, Organism=Caenorhabditis elegans, GI17549919, Length=289, Percent_Identity=36.3321799307958, Blast_Score=166, Evalue=3e-41, Organism=Caenorhabditis elegans, GI17563036, Length=291, Percent_Identity=36.0824742268041, Blast_Score=165, Evalue=6e-41, Organism=Caenorhabditis elegans, GI17540714, Length=185, Percent_Identity=32.4324324324324, Blast_Score=94, Evalue=2e-19, Organism=Caenorhabditis elegans, GI25145438, Length=188, Percent_Identity=32.4468085106383, Blast_Score=91, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17554946, Length=190, Percent_Identity=31.0526315789474, Blast_Score=86, Evalue=7e-17, Organism=Caenorhabditis elegans, GI17560910, Length=185, Percent_Identity=28.1081081081081, Blast_Score=70, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17534483, Length=191, Percent_Identity=24.0837696335079, Blast_Score=67, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6320241, Length=191, Percent_Identity=26.7015706806283, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24583077, Length=712, Percent_Identity=32.8651685393258, Blast_Score=321, Evalue=1e-87, Organism=Drosophila melanogaster, GI24583079, Length=712, Percent_Identity=32.8651685393258, Blast_Score=321, Evalue=1e-87, Organism=Drosophila melanogaster, GI19921000, Length=712, Percent_Identity=32.8651685393258, Blast_Score=321, Evalue=1e-87, Organism=Drosophila melanogaster, GI24653139, Length=187, Percent_Identity=34.2245989304813, Blast_Score=103, Evalue=4e-22, Organism=Drosophila melanogaster, GI20129971, Length=182, Percent_Identity=36.8131868131868, Blast_Score=99, Evalue=8e-21, Organism=Drosophila melanogaster, GI24653477, Length=182, Percent_Identity=36.8131868131868, Blast_Score=99, Evalue=8e-21, Organism=Drosophila melanogaster, GI28571729, Length=137, Percent_Identity=32.8467153284672, Blast_Score=75, Evalue=2e-13, Organism=Drosophila melanogaster, GI28571730, Length=137, Percent_Identity=32.8467153284672, Blast_Score=75, Evalue=2e-13, Organism=Drosophila melanogaster, GI24650670, Length=181, Percent_Identity=31.4917127071823, Blast_Score=74, Evalue=4e-13, Organism=Drosophila melanogaster, GI21357171, Length=190, Percent_Identity=28.4210526315789, Blast_Score=71, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006180 - InterPro: IPR006176 - InterPro: IPR006108 - InterPro: IPR008927 - InterPro: IPR001753 - InterPro: IPR013328 - InterPro: IPR018376 - InterPro: IPR012802 - InterPro: IPR016040 [H]
Pfam domain/function: PF00725 3HCDH; PF02737 3HCDH_N; PF00378 ECH [H]
EC number: =4.2.1.17; =5.1.2.3; =1.1.1.35 [H]
Molecular weight: Translated: 74337; Mature: 74337
Theoretical pI: Translated: 9.53; Mature: 9.53
Prosite motif: PS00067 3HCDH
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNYKHWDLQRDKDAILWLGLNRRDAAVNSINEEVLDELNSLLHEISHDKKAMGLIIYSL CCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHEEEEE KEKGFIAGADVNAFSQFESSSQAVDFLQKGQTVFARLQALSIPSVAMIDGFCMGGGYELA CCCCEEECCCCHHHHHHCCHHHHHHHHHHCHHHHHHHHHHCCCCHHHHCCEECCCCEEEE LACTYRIATDDKDTRIGLPEVMLGIHPGWGGTVRLPQLIGGFKALSQVILTGSAIPAAKA EEEEEEEECCCCCCCCCCHHHHHEECCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCHHC KNLGMIDEVVPVRQLRRAAVYFIKNKPPRHRASFIESLTNSSLLRKAIAYLLRYNVAKRV CCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RKEHYPAPYAVIDLWEKEGGVGERAYLKEVDSIEKLVSQNDTAKNLIRAFLLRERLKGFA HHHCCCCCCCEEEEHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH KDSHFKAAHVHVIGAGVMGGDIAAWCALRGLQVTLQDKSYEQIAPAIGRAHKLYSKKLRK CCCCCCEEEEEEEECCCCCCHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHCCC PRLIQAAMDRLIADPEGHGIKRADVIIEAVFENLAVKQEIMKTVEKNAKKDAIIATNTSS CHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC IPLDEISSVMSKPERLVGIHFFNPVAKMDLVEIVSSSSTAKKIQQSSCAFVNQIGKLPLP CCHHHHHHHHCCHHHEEEEHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCC VKSSPGFLINRVLMPYLMECVQLLDEGYSAETIDEAALQFGMFMGPVELADTVGMDVCLA CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH VAENLTSHFGGTIPQRLRDLVKEGKLGRKTGEGFYKYKNGKVIKKKAPSHVDKTIADRLI HHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCEEECCCEEEECCCCCHHHHHHHHHHH LRMVNESAACIREKVVEDSDLLDAGMIFATGFAPFRGGPMNYANDFGKDKLETLFKTFES HHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHH KYGERFKVDTSL HCCCEEEECCCC >Mature Secondary Structure MNNYKHWDLQRDKDAILWLGLNRRDAAVNSINEEVLDELNSLLHEISHDKKAMGLIIYSL CCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHEEEEE KEKGFIAGADVNAFSQFESSSQAVDFLQKGQTVFARLQALSIPSVAMIDGFCMGGGYELA CCCCEEECCCCHHHHHHCCHHHHHHHHHHCHHHHHHHHHHCCCCHHHHCCEECCCCEEEE LACTYRIATDDKDTRIGLPEVMLGIHPGWGGTVRLPQLIGGFKALSQVILTGSAIPAAKA EEEEEEEECCCCCCCCCCHHHHHEECCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCHHC KNLGMIDEVVPVRQLRRAAVYFIKNKPPRHRASFIESLTNSSLLRKAIAYLLRYNVAKRV CCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RKEHYPAPYAVIDLWEKEGGVGERAYLKEVDSIEKLVSQNDTAKNLIRAFLLRERLKGFA HHHCCCCCCCEEEEHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH KDSHFKAAHVHVIGAGVMGGDIAAWCALRGLQVTLQDKSYEQIAPAIGRAHKLYSKKLRK CCCCCCEEEEEEEECCCCCCHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHCCC PRLIQAAMDRLIADPEGHGIKRADVIIEAVFENLAVKQEIMKTVEKNAKKDAIIATNTSS CHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC IPLDEISSVMSKPERLVGIHFFNPVAKMDLVEIVSSSSTAKKIQQSSCAFVNQIGKLPLP CCHHHHHHHHCCHHHEEEEHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCC VKSSPGFLINRVLMPYLMECVQLLDEGYSAETIDEAALQFGMFMGPVELADTVGMDVCLA CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH VAENLTSHFGGTIPQRLRDLVKEGKLGRKTGEGFYKYKNGKVIKKKAPSHVDKTIADRLI HHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCEEECCCEEEECCCCCHHHHHHHHHHH LRMVNESAACIREKVVEDSDLLDAGMIFATGFAPFRGGPMNYANDFGKDKLETLFKTFES HHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHH KYGERFKVDTSL HCCCEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA