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The map label for this gene is ycfS [H]

Identifier: 148359132

GI number: 148359132

Start: 1828626

End: 1829360

Strand: Reverse

Name: ycfS [H]

Synonym: LPC_1022

Alternate gene names: 148359132

Gene position: 1829360-1828626 (Counterclockwise)

Preceding gene: 148359133

Following gene: 148359129

Centisome position: 51.15

GC content: 40.14

Gene sequence:

>735_bases
ATGGAGCAAAAATCAAAATCTATAATAAGAGTTTGGTATTTAATATTTTTACTCAGTCAATATTCTTTTGCGAATGTTTA
TGTATTGCCTGAAGCGGGAAATACCGTCGGTGAAATTCAGGTCGCATTTTCAGAATATGGAGAAACTATAGATGAGGTCG
GCCGGCGTTTTAATGTCGGTTATTATGAAATGGTACGTGCTAACCCGGGAGTGAATGCCAGATATCCGCTAGCCGCTAAC
ACAAAATTAATTATTCCATCTCGTTTTATCCTTCCCAACGTGCCCAGAAAAGGTATAGTGATTAATTTAGCAGAATATCG
ATTATATTATTTTCCTCCAGATGACAATGTTGTCATGACTTATCCTGTTGGGATTGGTAAAAAAGGATGGGAGACTCCTT
TGGGATTAAGCAGAATCACCTCCAAGGAAATTAATCCTACCTGGCGACCTACAGTAAAATTACAAAAGGCAGCTGAAAGC
ATTGGTGCTCCTATTCCCAGTGAGTTTCCCCCTGGCCCTTACAATCCTTTAGGGCAACATGTATTGCGTTTAGGGTGGCC
AGCTATCTTAATACATGGTTCTAATCGAGTTGATGGGATTGGAGCCAAAGTCAGTGCGGGGTGTATTCGTATGCTTCCTG
AAGATATTGAGCACCTATATAGTTTAGTGTCTGTAGGGACGCCAGTAAGAATTATAAATGCACCTCTACAAAGGCAAGCT
GATTTTAAGCAATAA

Upstream 100 bases:

>100_bases
CTAAATACGGCGAACGTTTTAAGGTAGATACCAGCTTATAATTTCTCTGCAAGGTAAGACGTTATGGTTTTACCTTGCTT
TTTAGAGAGAAAAGCATCAT

Downstream 100 bases:

>100_bases
CTATTTTCAGGTATGGATTTTCATTCAGGTTAATGCTTATAAATCCAAATAACGGGCCTCAACTTTAATTACAGTTAACA
GATAATAAGATAATCCAACA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MEQKSKSIIRVWYLIFLLSQYSFANVYVLPEAGNTVGEIQVAFSEYGETIDEVGRRFNVGYYEMVRANPGVNARYPLAAN
TKLIIPSRFILPNVPRKGIVINLAEYRLYYFPPDDNVVMTYPVGIGKKGWETPLGLSRITSKEINPTWRPTVKLQKAAES
IGAPIPSEFPPGPYNPLGQHVLRLGWPAILIHGSNRVDGIGAKVSAGCIRMLPEDIEHLYSLVSVGTPVRIINAPLQRQA
DFKQ

Sequences:

>Translated_244_residues
MEQKSKSIIRVWYLIFLLSQYSFANVYVLPEAGNTVGEIQVAFSEYGETIDEVGRRFNVGYYEMVRANPGVNARYPLAAN
TKLIIPSRFILPNVPRKGIVINLAEYRLYYFPPDDNVVMTYPVGIGKKGWETPLGLSRITSKEINPTWRPTVKLQKAAES
IGAPIPSEFPPGPYNPLGQHVLRLGWPAILIHGSNRVDGIGAKVSAGCIRMLPEDIEHLYSLVSVGTPVRIINAPLQRQA
DFKQ
>Mature_244_residues
MEQKSKSIIRVWYLIFLLSQYSFANVYVLPEAGNTVGEIQVAFSEYGETIDEVGRRFNVGYYEMVRANPGVNARYPLAAN
TKLIIPSRFILPNVPRKGIVINLAEYRLYYFPPDDNVVMTYPVGIGKKGWETPLGLSRITSKEINPTWRPTVKLQKAAES
IGAPIPSEFPPGPYNPLGQHVLRLGWPAILIHGSNRVDGIGAKVSAGCIRMLPEDIEHLYSLVSVGTPVRIINAPLQRQA
DFKQ

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp, also known as the Braun lipoprotein) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1787356, Length=223, Percent_Identity=41.7040358744395, Blast_Score=171, Evalue=5e-44,
Organism=Escherichia coli, GI1787968, Length=227, Percent_Identity=41.8502202643172, Blast_Score=170, Evalue=8e-44,
Organism=Escherichia coli, GI1787040, Length=245, Percent_Identity=37.1428571428571, Blast_Score=154, Evalue=4e-39,
Organism=Escherichia coli, GI1788299, Length=233, Percent_Identity=37.7682403433476, Blast_Score=152, Evalue=2e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 27239; Mature: 27239

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQKSKSIIRVWYLIFLLSQYSFANVYVLPEAGNTVGEIQVAFSEYGETIDEVGRRFNVG
CCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEHEEEHHHHHCHHHHHHHHHCCCC
YYEMVRANPGVNARYPLAANTKLIIPSRFILPNVPRKGIVINLAEYRLYYFPPDDNVVMT
CEEEEECCCCCCCCCCCCCCCEEEECCHHCCCCCCCCCEEEEEEEEEEEEECCCCCEEEE
YPVGIGKKGWETPLGLSRITSKEINPTWRPTVKLQKAAESIGAPIPSEFPPGPYNPLGQH
EECCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
VLRLGWPAILIHGSNRVDGIGAKVSAGCIRMLPEDIEHLYSLVSVGTPVRIINAPLQRQA
HHHHCCCEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHCCCCEEEECCCHHCCC
DFKQ
CCCC
>Mature Secondary Structure
MEQKSKSIIRVWYLIFLLSQYSFANVYVLPEAGNTVGEIQVAFSEYGETIDEVGRRFNVG
CCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEHEEEHHHHHCHHHHHHHHHCCCC
YYEMVRANPGVNARYPLAANTKLIIPSRFILPNVPRKGIVINLAEYRLYYFPPDDNVVMT
CEEEEECCCCCCCCCCCCCCCEEEECCHHCCCCCCCCCEEEEEEEEEEEEECCCCCEEEE
YPVGIGKKGWETPLGLSRITSKEINPTWRPTVKLQKAAESIGAPIPSEFPPGPYNPLGQH
EECCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
VLRLGWPAILIHGSNRVDGIGAKVSAGCIRMLPEDIEHLYSLVSVGTPVRIINAPLQRQA
HHHHCCCEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHCCCCEEEECCCHHCCC
DFKQ
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]