| Definition | Vibrio cholerae O395 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_009457 |
| Length | 3,024,069 |
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The map label for this gene is 147673479
Identifier: 147673479
GI number: 147673479
Start: 372563
End: 375451
Strand: Direct
Name: 147673479
Synonym: VC0395_A0347
Alternate gene names: NA
Gene position: 372563-375451 (Clockwise)
Preceding gene: 147674617
Following gene: 147673162
Centisome position: 12.32
GC content: 32.71
Gene sequence:
>2889_bases ATGTTTAACTTTTCTAATGCATTAGATAAGCTTACTGAAGATATTTATTCTAATGCTAATTTATATCGTTCAGATAATGT TGTAAGACTCTATGCTGATCATAACTATACAGGTCACTATATAGATATTGAAAATTCGACGAAATTCCTACATGGATTTA ATGATACACTTTCGTCTTGGACTATCCCACACGGCTGGTCTGTACGATTTTATGAACATGGTGACTATCAAGGACGTTAT TGGACAAGAGATGCTTCTGGAAATGAATCAGGATTTAATGATGTAATTAGCTCTATTGAGATATTGAAAAAAACATCTGG GATAAAAGGTAGCTTAATACGTAATGAGCTTGAATCATTAAAAAATAGCTACAGAGAAATAGATAAATTTCAAGTAATTG TCGGTTATGAAAATGAAACACCAATTTATGCCCTTCCTTTAACTGATGAGCTTTTTGCTAAAGCTCAGCTGTACAGTTAT GGATTAGATGCCAACTTTGTTGACAAACACTGGAAGTCATACCTAAAAAAAGGCCGCTTGTCTCTTATCCCCGGGGTTCG TGTAGGGAAGGATATTCTTAAAAAGGATGCTGCTGCATTAGGAGGACATGTAACAACAAAAGGTGCACAAGATTTATGGA GAAGAAAATACCAAGAAATCAGCCAAGTTATGTCAAAGTATATTGCAACTCTTATTTCATTTAAAGCAAAGCTAGAGGGA AAAGAATCATGGGATATTCAATCTGAAAATAAAAATCGTTCAGTTAGATTTAATTTTGGATTCGGAATTACATATTATAA TATGGGTAATAATGGTAAAGCCCATTCAAGATATGAAAATATTCCAACTCAAAGCTGGGTCATGACGGGTAAGGATATAA GTTATTCGGTTACGACACCTGGTGATTTATTGAGCCTGTTCAGTCTTAATAATTTTAAAGTGATAGAACCTATCGATTTT AATTCAGGCTCGAATAATTATCCACTTTATCAATTGATGAACTCCAATTACGCCGATAAGTGTTCATATTATCAAGATGG ATGGTATCCTCGGTGGAATGTGTGTGATACAAAATTTATAACAAGAAATAAAAAATCATATAATACAAAAGACATCATGT CATATGGATGGCAAGAGTTTCTAAATTTTAAAATGAACGATTTGAAGACTGTACAAACAGATAGAGATATAGCATATCAA GTATTGATGGCGATTCTTCCTGTATGGGGAACTGTTGAAGATATTAAATCGGGTGATGCAGGAATGGCAACTCTTGGTGT GTTAGGTGACGTAATGTTTTTTTTACCCATAGCAAAAAGTGTTTCTAGTATCGGAAAACTATCAGCTAAAGCTGCGTCGT CTAAACTACTACCGAGAAATGTTAAGTTTGTTAGAAATGTCATTGGCCTAAACAAACAAGGTAAGTATTCATTAACATCA TCGCAAGCTGATAGAGCTTTCTATAAATTAAAAATACAAGGAAAACTAAAGGAACTCCCTAAAGTTATATTAAATGAACT TAATCCTATCGCAGGTTTGGATCAGCTCGTTGTTACAGGGACAAGTAAATTATATAAAAAATATTCATCGCGGGTTAGTA TACCTAAAAAAAATATAATAGGTGATAACTCAGTTGTGTTTTACGATGATTTAAAGTTTAAATCAGAGGTGTTTTCAGTA TCATATTTAGATGATGGTTATTTAATTATTAATGATCAATATCGAGCTGTTTATATTGATGGTAACTACTATAGGGTCGA ATATGATCCAATACTACGTGCTAATTTCATTTATGAACAAAATAGTGGGAGAAGGATAGAAATTATTAAAGATAAAAATG GCAATTGGTCTATTAAAGAAATTAATAATGGGATTTGTCCACTTTTTTCGTTAATGAATAATACTAAAGCATGTCATTTC ACCAACATTGATGATGCATTAATAAGTATGGGATTTGACCCAAAAACCAGAACAGCATCAGGATTATTGGAGTTGATTAA TGGTCGATATGGACCTGATATTAAAGAATACTTATTAAAATTAAATTCTTCGCTATCTCTTAATTATAATATCGATATAG ATACCCTAAATTGGGTTTTCGATACTATAGAAAATTCTGGTATGTCTAGATATGCATTTACTCCATTTGTAAAAAATACT GATGCCATCATGTATGATATGCTAGGTAAGTTTTATAATAATAACATGAGTATTAAACCTGTTTTTTTGAACAAATCGCA GTACAAAAAATTAAAGAAAACTTTAGACTCTGATAAAGAATTAATTATAAATGTAATTTCAGAACAAAGGAAAATTAATC TAAAGGAGGCACAACAGCTCTTCGATGAATTTTATACTTCTGTTACGAAAGATCCTATTTTTGGTTTGGATTCTATAACA CACGATAGACCGGTTATTCATGTCGTCGGACACGGTGATGCTGGTGATGAAGTCATCTACCCTGGTGATGCAAGCCATTA CTATTACGCTTTCGAGTTAGCTGATATGCTGAAAAATAAAGGATTAAAGCCGGATTCAATCATAAAACTTGACTTTTGTT GGAGTGCTTGCTCTCTCAAACCAAGTGATTATTCAAAAACAGAAGTACTGACTAGTATGAATAAGGGGGATTACACTCCT TTATTTGGTGACATTGATGATAGCTTTCTGGGGGAGTTTGCTAAAGAATTAACGGCAATGTACCCTACGTTCCGTGGACC AATAATCGGATACGTAGGGACAGTATTAAACACAATTCAAGATAATGTGTTAACTTTAGCTAATACACAAGGTCGGTTTC ATGCTGTAGAAATGAACTTTTCTGATGGTAAATTTTTTTTCAAGAAAGAGGATGCAGAAGTTATTTATGGGAGTTATAAA AATAAATGA
Upstream 100 bases:
>100_bases TCAACAATAATCTATCAAAAACGTTACTTCCTGAAGAGGTCGGTATTGGATCTGAGCCATTTATTATTGATGAATTATTG GCAAAAATAATCAATTAACA
Downstream 100 bases:
>100_bases GAAAATCGATATTGATTAGCTTGTGCCTTTTTTCTAGCATTACAAATGCCTGTCCAATTGGTGATATTCTAGAGTCTATG GAATTACCATTAGAAATTGA
Product: putative inner membrane protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 962; Mature: 962
Protein sequence:
>962_residues MFNFSNALDKLTEDIYSNANLYRSDNVVRLYADHNYTGHYIDIENSTKFLHGFNDTLSSWTIPHGWSVRFYEHGDYQGRY WTRDASGNESGFNDVISSIEILKKTSGIKGSLIRNELESLKNSYREIDKFQVIVGYENETPIYALPLTDELFAKAQLYSY GLDANFVDKHWKSYLKKGRLSLIPGVRVGKDILKKDAAALGGHVTTKGAQDLWRRKYQEISQVMSKYIATLISFKAKLEG KESWDIQSENKNRSVRFNFGFGITYYNMGNNGKAHSRYENIPTQSWVMTGKDISYSVTTPGDLLSLFSLNNFKVIEPIDF NSGSNNYPLYQLMNSNYADKCSYYQDGWYPRWNVCDTKFITRNKKSYNTKDIMSYGWQEFLNFKMNDLKTVQTDRDIAYQ VLMAILPVWGTVEDIKSGDAGMATLGVLGDVMFFLPIAKSVSSIGKLSAKAASSKLLPRNVKFVRNVIGLNKQGKYSLTS SQADRAFYKLKIQGKLKELPKVILNELNPIAGLDQLVVTGTSKLYKKYSSRVSIPKKNIIGDNSVVFYDDLKFKSEVFSV SYLDDGYLIINDQYRAVYIDGNYYRVEYDPILRANFIYEQNSGRRIEIIKDKNGNWSIKEINNGICPLFSLMNNTKACHF TNIDDALISMGFDPKTRTASGLLELINGRYGPDIKEYLLKLNSSLSLNYNIDIDTLNWVFDTIENSGMSRYAFTPFVKNT DAIMYDMLGKFYNNNMSIKPVFLNKSQYKKLKKTLDSDKELIINVISEQRKINLKEAQQLFDEFYTSVTKDPIFGLDSIT HDRPVIHVVGHGDAGDEVIYPGDASHYYYAFELADMLKNKGLKPDSIIKLDFCWSACSLKPSDYSKTEVLTSMNKGDYTP LFGDIDDSFLGEFAKELTAMYPTFRGPIIGYVGTVLNTIQDNVLTLANTQGRFHAVEMNFSDGKFFFKKEDAEVIYGSYK NK
Sequences:
>Translated_962_residues MFNFSNALDKLTEDIYSNANLYRSDNVVRLYADHNYTGHYIDIENSTKFLHGFNDTLSSWTIPHGWSVRFYEHGDYQGRY WTRDASGNESGFNDVISSIEILKKTSGIKGSLIRNELESLKNSYREIDKFQVIVGYENETPIYALPLTDELFAKAQLYSY GLDANFVDKHWKSYLKKGRLSLIPGVRVGKDILKKDAAALGGHVTTKGAQDLWRRKYQEISQVMSKYIATLISFKAKLEG KESWDIQSENKNRSVRFNFGFGITYYNMGNNGKAHSRYENIPTQSWVMTGKDISYSVTTPGDLLSLFSLNNFKVIEPIDF NSGSNNYPLYQLMNSNYADKCSYYQDGWYPRWNVCDTKFITRNKKSYNTKDIMSYGWQEFLNFKMNDLKTVQTDRDIAYQ VLMAILPVWGTVEDIKSGDAGMATLGVLGDVMFFLPIAKSVSSIGKLSAKAASSKLLPRNVKFVRNVIGLNKQGKYSLTS SQADRAFYKLKIQGKLKELPKVILNELNPIAGLDQLVVTGTSKLYKKYSSRVSIPKKNIIGDNSVVFYDDLKFKSEVFSV SYLDDGYLIINDQYRAVYIDGNYYRVEYDPILRANFIYEQNSGRRIEIIKDKNGNWSIKEINNGICPLFSLMNNTKACHF TNIDDALISMGFDPKTRTASGLLELINGRYGPDIKEYLLKLNSSLSLNYNIDIDTLNWVFDTIENSGMSRYAFTPFVKNT DAIMYDMLGKFYNNNMSIKPVFLNKSQYKKLKKTLDSDKELIINVISEQRKINLKEAQQLFDEFYTSVTKDPIFGLDSIT HDRPVIHVVGHGDAGDEVIYPGDASHYYYAFELADMLKNKGLKPDSIIKLDFCWSACSLKPSDYSKTEVLTSMNKGDYTP LFGDIDDSFLGEFAKELTAMYPTFRGPIIGYVGTVLNTIQDNVLTLANTQGRFHAVEMNFSDGKFFFKKEDAEVIYGSYK NK >Mature_962_residues MFNFSNALDKLTEDIYSNANLYRSDNVVRLYADHNYTGHYIDIENSTKFLHGFNDTLSSWTIPHGWSVRFYEHGDYQGRY WTRDASGNESGFNDVISSIEILKKTSGIKGSLIRNELESLKNSYREIDKFQVIVGYENETPIYALPLTDELFAKAQLYSY GLDANFVDKHWKSYLKKGRLSLIPGVRVGKDILKKDAAALGGHVTTKGAQDLWRRKYQEISQVMSKYIATLISFKAKLEG KESWDIQSENKNRSVRFNFGFGITYYNMGNNGKAHSRYENIPTQSWVMTGKDISYSVTTPGDLLSLFSLNNFKVIEPIDF NSGSNNYPLYQLMNSNYADKCSYYQDGWYPRWNVCDTKFITRNKKSYNTKDIMSYGWQEFLNFKMNDLKTVQTDRDIAYQ VLMAILPVWGTVEDIKSGDAGMATLGVLGDVMFFLPIAKSVSSIGKLSAKAASSKLLPRNVKFVRNVIGLNKQGKYSLTS SQADRAFYKLKIQGKLKELPKVILNELNPIAGLDQLVVTGTSKLYKKYSSRVSIPKKNIIGDNSVVFYDDLKFKSEVFSV SYLDDGYLIINDQYRAVYIDGNYYRVEYDPILRANFIYEQNSGRRIEIIKDKNGNWSIKEINNGICPLFSLMNNTKACHF TNIDDALISMGFDPKTRTASGLLELINGRYGPDIKEYLLKLNSSLSLNYNIDIDTLNWVFDTIENSGMSRYAFTPFVKNT DAIMYDMLGKFYNNNMSIKPVFLNKSQYKKLKKTLDSDKELIINVISEQRKINLKEAQQLFDEFYTSVTKDPIFGLDSIT HDRPVIHVVGHGDAGDEVIYPGDASHYYYAFELADMLKNKGLKPDSIIKLDFCWSACSLKPSDYSKTEVLTSMNKGDYTP LFGDIDDSFLGEFAKELTAMYPTFRGPIIGYVGTVLNTIQDNVLTLANTQGRFHAVEMNFSDGKFFFKKEDAEVIYGSYK NK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 109731; Mature: 109731
Theoretical pI: Translated: 8.59; Mature: 8.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFNFSNALDKLTEDIYSNANLYRSDNVVRLYADHNYTGHYIDIENSTKFLHGFNDTLSSW CCCHHHHHHHHHHHHHCCCCEEECCCEEEEEECCCCCCCEEEECCCCCEECCCCHHHHCC TIPHGWSVRFYEHGDYQGRYWTRDASGNESGFNDVISSIEILKKTSGIKGSLIRNELESL CCCCCCEEEEEECCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH KNSYREIDKFQVIVGYENETPIYALPLTDELFAKAQLYSYGLDANFVDKHWKSYLKKGRL HHHHHHHCEEEEEEEECCCCCEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCE SLIPGVRVGKDILKKDAAALGGHVTTKGAQDLWRRKYQEISQVMSKYIATLISFKAKLEG EECCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC KESWDIQSENKNRSVRFNFGFGITYYNMGNNGKAHSRYENIPTQSWVMTGKDISYSVTTP CCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCHHHCCCCCCEEEECCCCEEEECCC GDLLSLFSLNNFKVIEPIDFNSGSNNYPLYQLMNSNYADKCSYYQDGWYPRWNVCDTKFI HHHHHHHCCCCEEEEEEEECCCCCCCCCCCEEECCCCCHHCCCCCCCCCCCCCCCCCHHE TRNKKSYNTKDIMSYGWQEFLNFKMNDLKTVQTDRDIAYQVLMAILPVWGTVEDIKSGDA ECCCCCCCHHHHHHHCHHHHHCCCCCCCEEECCCHHHHHHHHHHHHCCCCCHHHHCCCCC GMATLGVLGDVMFFLPIAKSVSSIGKLSAKAASSKLLPRNVKFVRNVIGLNKQGKYSLTS CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCEEECC SQADRAFYKLKIQGKLKELPKVILNELNPIAGLDQLVVTGTSKLYKKYSSRVSIPKKNII CCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCCHHEEECCHHHHHHHHHCCCCCCCCCC GDNSVVFYDDLKFKSEVFSVSYLDDGYLIINDQYRAVYIDGNYYRVEYDPILRANFIYEQ CCCCEEEEECCCCCCCEEEEEEECCCEEEEECCEEEEEECCCEEEEEECCEEEEEEEEEC NSGRRIEIIKDKNGNWSIKEINNGICPLFSLMNNTKACHFTNIDDALISMGFDPKTRTAS CCCCEEEEEECCCCCEEEEECCCCHHHHHHHHCCCCEEEECCCCHHHHHCCCCCCCHHHH GLLELINGRYGPDIKEYLLKLNSSLSLNYNIDIDTLNWVFDTIENSGMSRYAFTPFVKNT HHHHHHCCCCCCCHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC DAIMYDMLGKFYNNNMSIKPVFLNKSQYKKLKKTLDSDKELIINVISEQRKINLKEAQQL HHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHH FDEFYTSVTKDPIFGLDSITHDRPVIHVVGHGDAGDEVIYPGDASHYYYAFELADMLKNK HHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEECCCCCCEEEHHHHHHHHHHC GLKPDSIIKLDFCWSACSLKPSDYSKTEVLTSMNKGDYTPLFGDIDDSFLGEFAKELTAM CCCCCCEEEEEEEEHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH YPTFRGPIIGYVGTVLNTIQDNVLTLANTQGRFHAVEMNFSDGKFFFKKEDAEVIYGSYK CCCCCCCHHHHHHHHHHHHHHCEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEECCCC NK CC >Mature Secondary Structure MFNFSNALDKLTEDIYSNANLYRSDNVVRLYADHNYTGHYIDIENSTKFLHGFNDTLSSW CCCHHHHHHHHHHHHHCCCCEEECCCEEEEEECCCCCCCEEEECCCCCEECCCCHHHHCC TIPHGWSVRFYEHGDYQGRYWTRDASGNESGFNDVISSIEILKKTSGIKGSLIRNELESL CCCCCCEEEEEECCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH KNSYREIDKFQVIVGYENETPIYALPLTDELFAKAQLYSYGLDANFVDKHWKSYLKKGRL HHHHHHHCEEEEEEEECCCCCEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCE SLIPGVRVGKDILKKDAAALGGHVTTKGAQDLWRRKYQEISQVMSKYIATLISFKAKLEG EECCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC KESWDIQSENKNRSVRFNFGFGITYYNMGNNGKAHSRYENIPTQSWVMTGKDISYSVTTP CCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCHHHCCCCCCEEEECCCCEEEECCC GDLLSLFSLNNFKVIEPIDFNSGSNNYPLYQLMNSNYADKCSYYQDGWYPRWNVCDTKFI HHHHHHHCCCCEEEEEEEECCCCCCCCCCCEEECCCCCHHCCCCCCCCCCCCCCCCCHHE TRNKKSYNTKDIMSYGWQEFLNFKMNDLKTVQTDRDIAYQVLMAILPVWGTVEDIKSGDA ECCCCCCCHHHHHHHCHHHHHCCCCCCCEEECCCHHHHHHHHHHHHCCCCCHHHHCCCCC GMATLGVLGDVMFFLPIAKSVSSIGKLSAKAASSKLLPRNVKFVRNVIGLNKQGKYSLTS CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCEEECC SQADRAFYKLKIQGKLKELPKVILNELNPIAGLDQLVVTGTSKLYKKYSSRVSIPKKNII CCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCCHHEEECCHHHHHHHHHCCCCCCCCCC GDNSVVFYDDLKFKSEVFSVSYLDDGYLIINDQYRAVYIDGNYYRVEYDPILRANFIYEQ CCCCEEEEECCCCCCCEEEEEEECCCEEEEECCEEEEEECCCEEEEEECCEEEEEEEEEC NSGRRIEIIKDKNGNWSIKEINNGICPLFSLMNNTKACHFTNIDDALISMGFDPKTRTAS CCCCEEEEEECCCCCEEEEECCCCHHHHHHHHCCCCEEEECCCCHHHHHCCCCCCCHHHH GLLELINGRYGPDIKEYLLKLNSSLSLNYNIDIDTLNWVFDTIENSGMSRYAFTPFVKNT HHHHHHCCCCCCCHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC DAIMYDMLGKFYNNNMSIKPVFLNKSQYKKLKKTLDSDKELIINVISEQRKINLKEAQQL HHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHH FDEFYTSVTKDPIFGLDSITHDRPVIHVVGHGDAGDEVIYPGDASHYYYAFELADMLKNK HHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEECCCCCCEEEHHHHHHHHHHC GLKPDSIIKLDFCWSACSLKPSDYSKTEVLTSMNKGDYTPLFGDIDDSFLGEFAKELTAM CCCCCCEEEEEEEEHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH YPTFRGPIIGYVGTVLNTIQDNVLTLANTQGRFHAVEMNFSDGKFFFKKEDAEVIYGSYK CCCCCCCHHHHHHHHHHHHHHCEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEECCCC NK CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA