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The map label for this gene is gspD [H]

Identifier: 146343151

GI number: 146343151

Start: 6602362

End: 6604668

Strand: Direct

Name: gspD [H]

Synonym: BRADO6349

Alternate gene names: 146343151

Gene position: 6602362-6604668 (Clockwise)

Preceding gene: 146343140

Following gene: 146343152

Centisome position: 88.54

GC content: 66.19

Gene sequence:

>2307_bases
ATGTTTTGTATCGGCAATCGAAGCCTCTTTGCTGCGGTTGCCCGGCAGGCGTCGTTGCTCGCGATCGCGGTGATGCTTGC
CTCGTGCAACATGGCCACGCTCAACTCGCAGGCCAGCGCGCCGGCGGATGTCGACGTGATCGACAAGGTCCGGTCGCTCG
ATATCCTGCCGCGAGACAACGTGCCGGTGGCCTCCATCCAGGGACGCCCGGAGGCGGAGCGCGCCAGCGCGCGGACCTAT
CCGGGCACGATGGTCCAGGAGGTCGCCGAGATCCGGCCGCAACCCGCAGGCGACGGCCGGGGTTACGATCTCAATTTCGA
AAACACGCCGATCGCGCAGGTCGCAAAGGTCGTGATCGGCGACATTCTCGGCGCCGGCTACTCCATCGATCCGCGTGTGC
AGGGCAGCGTCAGCCTGGTGTCGGCCCGGCCGGTGCCGAAGTCCGACATCCTGTTCGTGCTGGAGAGCGCGCTGCGCCTG
TCGGGCGTGGTCCTGGTTCGCGAAGGCGGCGGCTACAAGCTGACGCCGCTGGGCGACGCCATCGGCGCCGGGCGCGTGGA
TGGCGAGGCGGCCCGGGCCGAGCCCGGCTACGGCGTCTCGGTGGTGCCGCTGCAATATGTCGGCGCGCAGACGATCCTGA
AACTGATGGATAGCTTCGCCACCCGCGCCGGCAGTGTACGCGCGGATCCGACGCGCAACCTGCTGCTGATCCAGGGAACG
GGTCCCGAGCGCCGTTCGGCGATCGAAACCGCGCTCAGCTTCGATGTCGACTGGATGCGCGGCCAATCGGTCGGTGTCTT
CCCGGTCAGCAATTCCGCCCCGGAGCCGATTGTCGCCGAGCTCGAGAAGATCATGGACACCGGCGAGAACGGGCTCAGCC
AGAACCTGGTCAAGCTGCAGGTCGTGAACCGTCTCAACGCGATCATGGTGGTGACGCGCAAGCCGGCGCTGCTGCAGAGC
GCGGCAACCTGGATCCGGCGGCTCGATCAGGCCGACTCCGGGCGCAACAGCGTTCATGTCTACCGTATCCGTTACGGCGA
CGCCCGCCAATTGGCGAAGCTGCTCACCGACATGTTCGGCGGCGCCGGCTCGTCCTCCACAGACAGCACCGACAACCAGA
CTGCGCCGGGCTCCGACGGCACGACGACCTCGGTCGCCGACCGGCTGTCGTTCAACACCAACGCAGGCAACTCGACGAAT
TCGAGCGCCAATCCGTTGAGTCGGACGCAAGGCGCCGGCGGTCTCTCCGGCATGCAATCGTCGAGCCCATCGTCGTCCTC
CAGCACCCCTTCCTCGACCGGGCTGGAGCCACGCAGCGGCGGCGCGGGGGGCGGCCAGCCGCTGATGCCCAATGTCCGCA
TCACCCCGGACACGGTGAACAACTCGCTGGTGATCTACGCCGACCGCGAGAGCTACCGAATCATCTCCAGCACGCTGCAG
CAGCTCGACCAGCCGGTGCTGCAGGTCGGCATCGACGCCACGATCGCCGAGGTGACGCTCACCAACGAGCTGTCCTACGG
CGTACAGGCCTATCTCTCGAGCAAGGTGCTCGGCCTCGGCACCGACAGGGGCTCGATCACGAACACGCAGACGACATCGG
TGGCCACAGCGACGACGGCGGCTGCGACCACCGCACTCATCAACCGCGCCCTTCCCGGCTTCAACTTCCTGATCGGGCAC
GAGGCGTCGCCCAACATGATACTCGATGCGCTCCACACCGTGACCAGCGTCAAGGTGCTCTCCAATCCCTCGCTGGTCGT
GATCAACAATCAGACCGCCACGCTGCAGGTCGGCGACGTCGTGCCGGTATCGACCGGCAGCGCAACCGTGCTGTCGTCGA
GCAACACCGTCGTCAACACCATCGACTATCGCAACACCGGCATCATCCTGCGCGTCGTGCCGCGCATCGCCGCCAACGGC
AACGTCCGGCTGGAGGTCGAGCAGGAGATCAGCAACGTCGCGGCGCAGACCGCCGCGAGCCTTACGCCGACGGTGTCGCA
GCGCAAGGTCAAGAGCGCTATCTCCGTCGCCAACGGGCAGACGGTGCTGCTGGCAGGCTTGATCAGTGAGCAGCAGACCG
GCAACCGCAACGGCATTCCCGGCTTCGACGAGATTCCCATTCTCGGTGACACGTTCTCGCACCAGGACAAGAAGGGCACG
CGGACCGAGCTCATCATCTTCATCCGGCCGCAGATCATCCGCGACGGCAGCGATGCCCATCAGGTGGCCGAGGAACTCCG
CTCCAAGCTCCGCGGATCGGTCGGAGCCAGCATCACGGATGATTTGCGTGTCCGCACCACTCGCTGA

Upstream 100 bases:

>100_bases
GATATACATAAGTGTCACATTGGACCGCTATGCAGATTGCAAGGCCCGGACGGGACGCGCTCACGTCTCGGCCGGTCAAC
ATGAGTAGGTCGGCAAGTCC

Downstream 100 bases:

>100_bases
AACCGTCTCACTCATCCGATCGACCCGTGCGCTCGCCGTGGTCCTGGCCGCAACCGGTCTGCTGGTCGGAGCGGCGGCGT
CTCCCGTGCGAGCGGATTCC

Product: general secretion pathway protein D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 768; Mature: 768

Protein sequence:

>768_residues
MFCIGNRSLFAAVARQASLLAIAVMLASCNMATLNSQASAPADVDVIDKVRSLDILPRDNVPVASIQGRPEAERASARTY
PGTMVQEVAEIRPQPAGDGRGYDLNFENTPIAQVAKVVIGDILGAGYSIDPRVQGSVSLVSARPVPKSDILFVLESALRL
SGVVLVREGGGYKLTPLGDAIGAGRVDGEAARAEPGYGVSVVPLQYVGAQTILKLMDSFATRAGSVRADPTRNLLLIQGT
GPERRSAIETALSFDVDWMRGQSVGVFPVSNSAPEPIVAELEKIMDTGENGLSQNLVKLQVVNRLNAIMVVTRKPALLQS
AATWIRRLDQADSGRNSVHVYRIRYGDARQLAKLLTDMFGGAGSSSTDSTDNQTAPGSDGTTTSVADRLSFNTNAGNSTN
SSANPLSRTQGAGGLSGMQSSSPSSSSSTPSSTGLEPRSGGAGGGQPLMPNVRITPDTVNNSLVIYADRESYRIISSTLQ
QLDQPVLQVGIDATIAEVTLTNELSYGVQAYLSSKVLGLGTDRGSITNTQTTSVATATTAAATTALINRALPGFNFLIGH
EASPNMILDALHTVTSVKVLSNPSLVVINNQTATLQVGDVVPVSTGSATVLSSSNTVVNTIDYRNTGIILRVVPRIAANG
NVRLEVEQEISNVAAQTAASLTPTVSQRKVKSAISVANGQTVLLAGLISEQQTGNRNGIPGFDEIPILGDTFSHQDKKGT
RTELIIFIRPQIIRDGSDAHQVAEELRSKLRGSVGASITDDLRVRTTR

Sequences:

>Translated_768_residues
MFCIGNRSLFAAVARQASLLAIAVMLASCNMATLNSQASAPADVDVIDKVRSLDILPRDNVPVASIQGRPEAERASARTY
PGTMVQEVAEIRPQPAGDGRGYDLNFENTPIAQVAKVVIGDILGAGYSIDPRVQGSVSLVSARPVPKSDILFVLESALRL
SGVVLVREGGGYKLTPLGDAIGAGRVDGEAARAEPGYGVSVVPLQYVGAQTILKLMDSFATRAGSVRADPTRNLLLIQGT
GPERRSAIETALSFDVDWMRGQSVGVFPVSNSAPEPIVAELEKIMDTGENGLSQNLVKLQVVNRLNAIMVVTRKPALLQS
AATWIRRLDQADSGRNSVHVYRIRYGDARQLAKLLTDMFGGAGSSSTDSTDNQTAPGSDGTTTSVADRLSFNTNAGNSTN
SSANPLSRTQGAGGLSGMQSSSPSSSSSTPSSTGLEPRSGGAGGGQPLMPNVRITPDTVNNSLVIYADRESYRIISSTLQ
QLDQPVLQVGIDATIAEVTLTNELSYGVQAYLSSKVLGLGTDRGSITNTQTTSVATATTAAATTALINRALPGFNFLIGH
EASPNMILDALHTVTSVKVLSNPSLVVINNQTATLQVGDVVPVSTGSATVLSSSNTVVNTIDYRNTGIILRVVPRIAANG
NVRLEVEQEISNVAAQTAASLTPTVSQRKVKSAISVANGQTVLLAGLISEQQTGNRNGIPGFDEIPILGDTFSHQDKKGT
RTELIIFIRPQIIRDGSDAHQVAEELRSKLRGSVGASITDDLRVRTTR
>Mature_768_residues
MFCIGNRSLFAAVARQASLLAIAVMLASCNMATLNSQASAPADVDVIDKVRSLDILPRDNVPVASIQGRPEAERASARTY
PGTMVQEVAEIRPQPAGDGRGYDLNFENTPIAQVAKVVIGDILGAGYSIDPRVQGSVSLVSARPVPKSDILFVLESALRL
SGVVLVREGGGYKLTPLGDAIGAGRVDGEAARAEPGYGVSVVPLQYVGAQTILKLMDSFATRAGSVRADPTRNLLLIQGT
GPERRSAIETALSFDVDWMRGQSVGVFPVSNSAPEPIVAELEKIMDTGENGLSQNLVKLQVVNRLNAIMVVTRKPALLQS
AATWIRRLDQADSGRNSVHVYRIRYGDARQLAKLLTDMFGGAGSSSTDSTDNQTAPGSDGTTTSVADRLSFNTNAGNSTN
SSANPLSRTQGAGGLSGMQSSSPSSSSSTPSSTGLEPRSGGAGGGQPLMPNVRITPDTVNNSLVIYADRESYRIISSTLQ
QLDQPVLQVGIDATIAEVTLTNELSYGVQAYLSSKVLGLGTDRGSITNTQTTSVATATTAAATTALINRALPGFNFLIGH
EASPNMILDALHTVTSVKVLSNPSLVVINNQTATLQVGDVVPVSTGSATVLSSSNTVVNTIDYRNTGIILRVVPRIAANG
NVRLEVEQEISNVAAQTAASLTPTVSQRKVKSAISVANGQTVLLAGLISEQQTGNRNGIPGFDEIPILGDTFSHQDKKGT
RTELIIFIRPQIIRDGSDAHQVAEELRSKLRGSVGASITDDLRVRTTR

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=676, Percent_Identity=24.4082840236686, Blast_Score=136, Evalue=6e-33,
Organism=Escherichia coli, GI1789793, Length=290, Percent_Identity=22.7586206896552, Blast_Score=86, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 80691; Mature: 80691

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFCIGNRSLFAAVARQASLLAIAVMLASCNMATLNSQASAPADVDVIDKVRSLDILPRDN
CEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCC
VPVASIQGRPEAERASARTYPGTMVQEVAEIRPQPAGDGRGYDLNFENTPIAQVAKVVIG
CCEEEECCCCCHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCEECCCCCCCHHHHHHHHHH
DILGAGYSIDPRVQGSVSLVSARPVPKSDILFVLESALRLSGVVLVREGGGYKLTPLGDA
HHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCEEEEEECCCEEECCCCCC
IGAGRVDGEAARAEPGYGVSVVPLQYVGAQTILKLMDSFATRAGSVRADPTRNLLLIQGT
CCCCCCCCCHHCCCCCCCEEEEHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECC
GPERRSAIETALSFDVDWMRGQSVGVFPVSNSAPEPIVAELEKIMDTGENGLSQNLVKLQ
CCHHHHHHHHHHHCCCHHHCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHH
VVNRLNAIMVVTRKPALLQSAATWIRRLDQADSGRNSVHVYRIRYGDARQLAKLLTDMFG
HHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHC
GAGSSSTDSTDNQTAPGSDGTTTSVADRLSFNTNAGNSTNSSANPLSRTQGAGGLSGMQS
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCC
SSPSSSSSTPSSTGLEPRSGGAGGGQPLMPNVRITPDTVNNSLVIYADRESYRIISSTLQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCHHHHHHHHH
QLDQPVLQVGIDATIAEVTLTNELSYGVQAYLSSKVLGLGTDRGSITNTQTTSVATATTA
HHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCEEHHHHH
AATTALINRALPGFNFLIGHEASPNMILDALHTVTSVKVLSNPSLVVINNQTATLQVGDV
HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHEEEEECCCCEEEECCCEEEEEECCE
VPVSTGSATVLSSSNTVVNTIDYRNTGIILRVVPRIAANGNVRLEVEQEISNVAAQTAAS
EEECCCCEEEEECCCCEEEEEEECCCCEEEEEECHHCCCCCEEEEEHHHHHHHHHHHHHH
LTPTVSQRKVKSAISVANGQTVLLAGLISEQQTGNRNGIPGFDEIPILGDTFSHQDKKGT
CCCCHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
RTELIIFIRPQIIRDGSDAHQVAEELRSKLRGSVGASITDDLRVRTTR
CEEEEEEECCEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEECC
>Mature Secondary Structure
MFCIGNRSLFAAVARQASLLAIAVMLASCNMATLNSQASAPADVDVIDKVRSLDILPRDN
CEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCC
VPVASIQGRPEAERASARTYPGTMVQEVAEIRPQPAGDGRGYDLNFENTPIAQVAKVVIG
CCEEEECCCCCHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCEECCCCCCCHHHHHHHHHH
DILGAGYSIDPRVQGSVSLVSARPVPKSDILFVLESALRLSGVVLVREGGGYKLTPLGDA
HHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCEEEEEECCCEEECCCCCC
IGAGRVDGEAARAEPGYGVSVVPLQYVGAQTILKLMDSFATRAGSVRADPTRNLLLIQGT
CCCCCCCCCHHCCCCCCCEEEEHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECC
GPERRSAIETALSFDVDWMRGQSVGVFPVSNSAPEPIVAELEKIMDTGENGLSQNLVKLQ
CCHHHHHHHHHHHCCCHHHCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHH
VVNRLNAIMVVTRKPALLQSAATWIRRLDQADSGRNSVHVYRIRYGDARQLAKLLTDMFG
HHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHC
GAGSSSTDSTDNQTAPGSDGTTTSVADRLSFNTNAGNSTNSSANPLSRTQGAGGLSGMQS
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCC
SSPSSSSSTPSSTGLEPRSGGAGGGQPLMPNVRITPDTVNNSLVIYADRESYRIISSTLQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCHHHHHHHHH
QLDQPVLQVGIDATIAEVTLTNELSYGVQAYLSSKVLGLGTDRGSITNTQTTSVATATTA
HHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCEEHHHHH
AATTALINRALPGFNFLIGHEASPNMILDALHTVTSVKVLSNPSLVVINNQTATLQVGDV
HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHEEEEECCCCEEEECCCEEEEEECCE
VPVSTGSATVLSSSNTVVNTIDYRNTGIILRVVPRIAANGNVRLEVEQEISNVAAQTAAS
EEECCCCEEEEECCCCEEEEEEECCCCEEEEEECHHCCCCCEEEEEHHHHHHHHHHHHHH
LTPTVSQRKVKSAISVANGQTVLLAGLISEQQTGNRNGIPGFDEIPILGDTFSHQDKKGT
CCCCHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
RTELIIFIRPQIIRDGSDAHQVAEELRSKLRGSVGASITDDLRVRTTR
CEEEEEEECCEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1313415; 12024217; 10692359 [H]