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The map label for this gene is ycjO [C]

Identifier: 146342843

GI number: 146342843

Start: 6245316

End: 6246251

Strand: Direct

Name: ycjO [C]

Synonym: BRADO6023

Alternate gene names: 146342843

Gene position: 6245316-6246251 (Clockwise)

Preceding gene: 146342842

Following gene: 146342844

Centisome position: 83.76

GC content: 64.42

Gene sequence:

>936_bases
GTGAGCACGATCGTCGAACAGGCGGGCGCGGCAGCGGAAGCTGCTGCGCCGGAGCGCGCCTTACGGCCGCCGTCCTACTG
GCCTTTCGTGGTGCCGGCGCTCGTGACGGTGCTCGCAGTGATCATCTTCCCCTGGCTGTTCACGATCTGGATGAGCTTCC
AGGAGTGGAAGGTCGGCTCGCCCACGACGTTTGTCGGACTGGCAAACTATCTGCGCTTGCCCACCGACCCCCGCTTCGTC
GAGGCGGTCGGACACACGCTGTCCTACACCGCGCTGTCCGTCCTGCTGCCGCTGGTGCTTGGCACCTTTGCCGCGGTGCT
GTTCCACGCGCGGTTTCCGGGACGTGGTCTGCTGCGCGCGCTGTTCATCATGCCGATGATGGCGACGCCGGTGGCGATCG
CCCTGGTGTGGACGATGATGTTCCACCCTCAACTCGGCATTCTGAACTATCTGCTGTCGCTGGTCGGCCTGCCACCGCAG
CTCTGGGTATTTCACCCGGGTACGGTGATCCCGTCGCTGGTGCTGGTCGAGACCTGGCAATGGACGCCGCTGGTCATGCT
GATCGTGCTCGGCGGCATCGCCTCGCTGCCGACCGAGCCCTATGAGAGCGCGCAGATCGACGGCGCCTCGACCTGGCAGA
TGTTCCGCTACATCACGCTGCCGCTGATCATGCCGTTTCTGTTCATCGCCGCAATGATCCGCGCCATCGACGCGATCAAG
AGCTTCGACATCATCTTCGCCATCACCCAAGGCGGACCGGGCTCGGCGTCCGAGACCATCAACCTCTATCTCTACAGCGT
CGCCTTCGTCTATTACGATCTCGGCTATGCCTCGGCGATCGCGGTGGTGTTCTTCGTCCTGATCATCGCGCTCACCGCCC
TGCTCCTGGTGCTGCGCCGGCGCGCGCAGTGGACTGCGCTGGGGAACGAGGCATGA

Upstream 100 bases:

>100_bases
GCGCGGCGCTCACCGCGACGCTGTCGGGCGCCGATCCCGCCACCGAGCTGAAGAAGGCGCACGAGCAGTTCCGCCCGATC
CTGGAGCGCAGCGAGAAAGC

Downstream 100 bases:

>100_bases
CCGTCAACACCATCCTCGGCCGGCTCGGCTTGGCGATCGGCGTCTTCCTGATCGTCTCGCCTGCGATCCTGTTCTTCCTC
TGGATGATCTCGCTGTCGGT

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MSTIVEQAGAAAEAAAPERALRPPSYWPFVVPALVTVLAVIIFPWLFTIWMSFQEWKVGSPTTFVGLANYLRLPTDPRFV
EAVGHTLSYTALSVLLPLVLGTFAAVLFHARFPGRGLLRALFIMPMMATPVAIALVWTMMFHPQLGILNYLLSLVGLPPQ
LWVFHPGTVIPSLVLVETWQWTPLVMLIVLGGIASLPTEPYESAQIDGASTWQMFRYITLPLIMPFLFIAAMIRAIDAIK
SFDIIFAITQGGPGSASETINLYLYSVAFVYYDLGYASAIAVVFFVLIIALTALLLVLRRRAQWTALGNEA

Sequences:

>Translated_311_residues
MSTIVEQAGAAAEAAAPERALRPPSYWPFVVPALVTVLAVIIFPWLFTIWMSFQEWKVGSPTTFVGLANYLRLPTDPRFV
EAVGHTLSYTALSVLLPLVLGTFAAVLFHARFPGRGLLRALFIMPMMATPVAIALVWTMMFHPQLGILNYLLSLVGLPPQ
LWVFHPGTVIPSLVLVETWQWTPLVMLIVLGGIASLPTEPYESAQIDGASTWQMFRYITLPLIMPFLFIAAMIRAIDAIK
SFDIIFAITQGGPGSASETINLYLYSVAFVYYDLGYASAIAVVFFVLIIALTALLLVLRRRAQWTALGNEA
>Mature_310_residues
STIVEQAGAAAEAAAPERALRPPSYWPFVVPALVTVLAVIIFPWLFTIWMSFQEWKVGSPTTFVGLANYLRLPTDPRFVE
AVGHTLSYTALSVLLPLVLGTFAAVLFHARFPGRGLLRALFIMPMMATPVAIALVWTMMFHPQLGILNYLLSLVGLPPQL
WVFHPGTVIPSLVLVETWQWTPLVMLIVLGGIASLPTEPYESAQIDGASTWQMFRYITLPLIMPFLFIAAMIRAIDAIKS
FDIIFAITQGGPGSASETINLYLYSVAFVYYDLGYASAIAVVFFVLIIALTALLLVLRRRAQWTALGNEA

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=253, Percent_Identity=34.7826086956522, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1789861, Length=267, Percent_Identity=27.7153558052434, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1790465, Length=257, Percent_Identity=29.1828793774319, Blast_Score=82, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34263; Mature: 34132

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTIVEQAGAAAEAAAPERALRPPSYWPFVVPALVTVLAVIIFPWLFTIWMSFQEWKVGS
CCCHHHHCCCHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PTTFVGLANYLRLPTDPRFVEAVGHTLSYTALSVLLPLVLGTFAAVLFHARFPGRGLLRA
CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LFIMPMMATPVAIALVWTMMFHPQLGILNYLLSLVGLPPQLWVFHPGTVIPSLVLVETWQ
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCC
WTPLVMLIVLGGIASLPTEPYESAQIDGASTWQMFRYITLPLIMPFLFIAAMIRAIDAIK
HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFDIIFAITQGGPGSASETINLYLYSVAFVYYDLGYASAIAVVFFVLIIALTALLLVLRR
HCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAQWTALGNEA
HHHHHHCCCCC
>Mature Secondary Structure 
STIVEQAGAAAEAAAPERALRPPSYWPFVVPALVTVLAVIIFPWLFTIWMSFQEWKVGS
CCHHHHCCCHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PTTFVGLANYLRLPTDPRFVEAVGHTLSYTALSVLLPLVLGTFAAVLFHARFPGRGLLRA
CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LFIMPMMATPVAIALVWTMMFHPQLGILNYLLSLVGLPPQLWVFHPGTVIPSLVLVETWQ
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCC
WTPLVMLIVLGGIASLPTEPYESAQIDGASTWQMFRYITLPLIMPFLFIAAMIRAIDAIK
HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFDIIFAITQGGPGSASETINLYLYSVAFVYYDLGYASAIAVVFFVLIIALTALLLVLRR
HCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAQWTALGNEA
HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]