Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
---|---|
Accession | NC_009445 |
Length | 7,456,587 |
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The map label for this gene is nodQ [H]
Identifier: 146342053
GI number: 146342053
Start: 5403418
End: 5405280
Strand: Direct
Name: nodQ [H]
Synonym: BRADO5193
Alternate gene names: 146342053
Gene position: 5403418-5405280 (Clockwise)
Preceding gene: 146342052
Following gene: 146342057
Centisome position: 72.47
GC content: 58.56
Gene sequence:
>1863_bases ATGGCTGCAGCTCAGGCACCAGGGGCGCCGTCCAGAGACCTTCTGCGCTTCATCACCTGCGGTTCGGTCGATGACGGAAA ATCGACACTCATCGGACGCCTCCTGCACGATTCTCACGTCATCTTTGAGGACCAGCTGCGCAGCCTTGCCTCCGACTCGC AGAAGTTCGGCACCACAGGGGAAGAGATCGATCTGGCGCTGCTCGTGGACGGATTAGAAGCCGAACGGGAGCAGGGAATT ACGATCGACGTCGCCTACCGCTTCTTCAGTACGCCGCTGCGGTCGTTTATCGTGGCCGATACTCCGGGGCACGAGCAATA CACCCGCAACATGGCCACTGGCGCTTCATTAGCCAGTTTGGCCATCATCCTGATTGATGCACGCAAGGGCGTCCTGCTGC AGACGCGCCGGCATTCGCTGATTTGCTCGCTGCTTGGCATTCGCCACATCGTTCTTGCCATCAATAAAATGGACCTGGTC GACTTCGACAAAGCGACCTTCGACGCGATCGTCAATGATTATACGGCTTTCGCTGCACACCTCGCCTTCGCTACGATCGT CCCCATCCCTCTTTCGGCCCGCTACGGCCATAATGTAACGACCCGCTCCGATCGAACACCATGGTTCTCGGGGCCTGTAC TGATCGATTGCCTCGAGAATGTCGATGTCGCATCCGATCTCAACAAGCTGCCATTCCGATTTCCAGTCCAACGGGTGAAC CGTCCCAATCTGGACTTTCGGGGCTATTCGGGGACGGTCGCGTCGGGTGATATCCGGGTGGGGGACCGGGTCACGACAAC CCCTGCCGGGCAGACCACTTCGGTTCGGGAAATTGTCACAGCTGACGGGATGCTCGAAGTAGCCCGGGCCGGAGAAGCCG TTACCTTGACACTGGTGGACGAGATAGACGTTTCGCGCGGCGACCTCCTTGCGTCGCCCGATCACCTTCCAGAAATCAAT GATCAGTTCGCCGCGCACATCATCTGGATGAGCGACCGGCCACTGATCAGCGGCCGGTCTTATCTCGCCCGTATCGGTAC GCGCACGATATCCATGAGCGTCACTGCCATAAGACACAAAATGGACGTCAACACCGGTGAGCGCTTGGCTGCAAGCGTCC TGGCTCTGAACGAGATCGGTTTGTGCAACGTCGCGACGGTCAGACCGATCGCGTTCGACCCCTACGCAGCCAACCGCGCG ACTGGCAGCTTCATCGTCATTGATCGCCTCACGAACGAGACGGTCGGAGCGGGCATGATCCTCTTCGGGTTGCGGCGGGG TTCCAATGTGCAATCGCAGCCGCTCCTCGTTAATCGAGAGGCACGCGCGGCGATCAAGCGCCAAGTCCCAGCAGTCGTAT GGTTCACTGGCCTCTCTGGCGCGGGCAAATCGACCATTGCAAACTGCCTTGAGAAGAAGCTGCACACCGCCGGCTTCCAT ACGATGCTGCTGGACGGAGACAACATCAGGCAGGGCCTAAATCGTGATCTCGGCTTCACTGAAGCCGATCGTGTCGAGAA CATTCGAAGGGTCGGTGAAGTCGCCAAGCTCTTCGTCGATGCCGGACTGATCGTGATATGTTCCTTTATTTCTCCCTACC GCTCGGACCGAGACATGGTGCGGGAGCTCATGCCTCCGGCGACTTTCTTCGAGGTGTTCGTCGATACTCCACTTGAAGAG TGCATGCGACGCGACCCCAAGGGCCTGTATTCCAAGGCCAGGGCTGGAAAGATCGCAAACTTCACCGGGATCGACGCTCC GTACGAACCACCGCTCAATCCCGATCTCCACCTTAGCACCGTTGGGCACGAGCCTGAGCAACTCGCACAGAAGATCGTCG ATAAACTCGCGACCCGAAACTGA
Upstream 100 bases:
>100_bases ATGAAATGAGGACTACGCGTATCTCGGAGCGTCAGGGACGCCTCATTGATACGGACGAGGCCGCATCCATGGAGAAAAAG AAGAAAGAGGGCTACTTCTG
Downstream 100 bases:
>100_bases GTTAATCAACTAATGAGTGTCAATCTTTTCTCCAGACCGAAAAACTATGGCTTGCCTGCAGGAGTGTCGTGACTGGCCAT ACCGTTCGGCGCGACGGTGA
Product: putative bifunctional sulfate adenylyltransferase/adenylyl-sulfate kinase CysN/CysC
Products: NA
Alternate protein names: Nodulation protein Q; Sulfate adenylyltransferase subunit 1; ATP-sulfurylase large subunit; Sulfate adenylate transferase; SAT; Adenylyl-sulfate kinase; APS kinase; ATP adenosine-5'-phosphosulfate 3'-phosphotransferase [H]
Number of amino acids: Translated: 620; Mature: 619
Protein sequence:
>620_residues MAAAQAPGAPSRDLLRFITCGSVDDGKSTLIGRLLHDSHVIFEDQLRSLASDSQKFGTTGEEIDLALLVDGLEAEREQGI TIDVAYRFFSTPLRSFIVADTPGHEQYTRNMATGASLASLAIILIDARKGVLLQTRRHSLICSLLGIRHIVLAINKMDLV DFDKATFDAIVNDYTAFAAHLAFATIVPIPLSARYGHNVTTRSDRTPWFSGPVLIDCLENVDVASDLNKLPFRFPVQRVN RPNLDFRGYSGTVASGDIRVGDRVTTTPAGQTTSVREIVTADGMLEVARAGEAVTLTLVDEIDVSRGDLLASPDHLPEIN DQFAAHIIWMSDRPLISGRSYLARIGTRTISMSVTAIRHKMDVNTGERLAASVLALNEIGLCNVATVRPIAFDPYAANRA TGSFIVIDRLTNETVGAGMILFGLRRGSNVQSQPLLVNREARAAIKRQVPAVVWFTGLSGAGKSTIANCLEKKLHTAGFH TMLLDGDNIRQGLNRDLGFTEADRVENIRRVGEVAKLFVDAGLIVICSFISPYRSDRDMVRELMPPATFFEVFVDTPLEE CMRRDPKGLYSKARAGKIANFTGIDAPYEPPLNPDLHLSTVGHEPEQLAQKIVDKLATRN
Sequences:
>Translated_620_residues MAAAQAPGAPSRDLLRFITCGSVDDGKSTLIGRLLHDSHVIFEDQLRSLASDSQKFGTTGEEIDLALLVDGLEAEREQGI TIDVAYRFFSTPLRSFIVADTPGHEQYTRNMATGASLASLAIILIDARKGVLLQTRRHSLICSLLGIRHIVLAINKMDLV DFDKATFDAIVNDYTAFAAHLAFATIVPIPLSARYGHNVTTRSDRTPWFSGPVLIDCLENVDVASDLNKLPFRFPVQRVN RPNLDFRGYSGTVASGDIRVGDRVTTTPAGQTTSVREIVTADGMLEVARAGEAVTLTLVDEIDVSRGDLLASPDHLPEIN DQFAAHIIWMSDRPLISGRSYLARIGTRTISMSVTAIRHKMDVNTGERLAASVLALNEIGLCNVATVRPIAFDPYAANRA TGSFIVIDRLTNETVGAGMILFGLRRGSNVQSQPLLVNREARAAIKRQVPAVVWFTGLSGAGKSTIANCLEKKLHTAGFH TMLLDGDNIRQGLNRDLGFTEADRVENIRRVGEVAKLFVDAGLIVICSFISPYRSDRDMVRELMPPATFFEVFVDTPLEE CMRRDPKGLYSKARAGKIANFTGIDAPYEPPLNPDLHLSTVGHEPEQLAQKIVDKLATRN >Mature_619_residues AAAQAPGAPSRDLLRFITCGSVDDGKSTLIGRLLHDSHVIFEDQLRSLASDSQKFGTTGEEIDLALLVDGLEAEREQGIT IDVAYRFFSTPLRSFIVADTPGHEQYTRNMATGASLASLAIILIDARKGVLLQTRRHSLICSLLGIRHIVLAINKMDLVD FDKATFDAIVNDYTAFAAHLAFATIVPIPLSARYGHNVTTRSDRTPWFSGPVLIDCLENVDVASDLNKLPFRFPVQRVNR PNLDFRGYSGTVASGDIRVGDRVTTTPAGQTTSVREIVTADGMLEVARAGEAVTLTLVDEIDVSRGDLLASPDHLPEIND QFAAHIIWMSDRPLISGRSYLARIGTRTISMSVTAIRHKMDVNTGERLAASVLALNEIGLCNVATVRPIAFDPYAANRAT GSFIVIDRLTNETVGAGMILFGLRRGSNVQSQPLLVNREARAAIKRQVPAVVWFTGLSGAGKSTIANCLEKKLHTAGFHT MLLDGDNIRQGLNRDLGFTEADRVENIRRVGEVAKLFVDAGLIVICSFISPYRSDRDMVRELMPPATFFEVFVDTPLEEC MRRDPKGLYSKARAGKIANFTGIDAPYEPPLNPDLHLSTVGHEPEQLAQKIVDKLATRN
Specific function: APS kinase catalyzes the synthesis of activated sulfate [H]
COG id: COG2895
COG function: function code P; GTPases - Sulfate adenylate transferase subunit 1
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the APS kinase family [H]
Homologues:
Organism=Homo sapiens, GI46094058, Length=205, Percent_Identity=49.7560975609756, Blast_Score=192, Evalue=5e-49, Organism=Homo sapiens, GI34447231, Length=202, Percent_Identity=47.029702970297, Blast_Score=173, Evalue=4e-43, Organism=Homo sapiens, GI62912492, Length=202, Percent_Identity=47.029702970297, Blast_Score=173, Evalue=4e-43, Organism=Homo sapiens, GI223555963, Length=426, Percent_Identity=28.8732394366197, Blast_Score=168, Evalue=2e-41, Organism=Homo sapiens, GI5729864, Length=426, Percent_Identity=28.8732394366197, Blast_Score=167, Evalue=2e-41, Organism=Homo sapiens, GI4503475, Length=463, Percent_Identity=26.133909287257, Blast_Score=152, Evalue=1e-36, Organism=Homo sapiens, GI194018522, Length=432, Percent_Identity=25.2314814814815, Blast_Score=146, Evalue=6e-35, Organism=Homo sapiens, GI194018520, Length=432, Percent_Identity=25.2314814814815, Blast_Score=146, Evalue=7e-35, Organism=Homo sapiens, GI194097354, Length=432, Percent_Identity=25.2314814814815, Blast_Score=146, Evalue=7e-35, Organism=Homo sapiens, GI46094014, Length=431, Percent_Identity=24.8259860788863, Blast_Score=141, Evalue=2e-33, Organism=Homo sapiens, GI4503471, Length=435, Percent_Identity=25.5172413793103, Blast_Score=141, Evalue=2e-33, Organism=Homo sapiens, GI34147630, Length=310, Percent_Identity=29.0322580645161, Blast_Score=87, Evalue=4e-17, Organism=Escherichia coli, GI1789108, Length=441, Percent_Identity=54.6485260770975, Blast_Score=469, Evalue=1e-133, Organism=Escherichia coli, GI1789107, Length=186, Percent_Identity=55.9139784946236, Blast_Score=207, Evalue=2e-54, Organism=Escherichia coli, GI2367247, Length=247, Percent_Identity=25.9109311740891, Blast_Score=76, Evalue=6e-15, Organism=Escherichia coli, GI1790412, Length=321, Percent_Identity=24.2990654205607, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI1789737, Length=321, Percent_Identity=24.2990654205607, Blast_Score=75, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17542422, Length=200, Percent_Identity=48, Blast_Score=180, Evalue=2e-45, Organism=Caenorhabditis elegans, GI32566629, Length=429, Percent_Identity=27.7389277389277, Blast_Score=161, Evalue=8e-40, Organism=Caenorhabditis elegans, GI115532067, Length=432, Percent_Identity=27.3148148148148, Blast_Score=151, Evalue=1e-36, Organism=Caenorhabditis elegans, GI17552884, Length=435, Percent_Identity=27.5862068965517, Blast_Score=151, Evalue=1e-36, Organism=Caenorhabditis elegans, GI17569207, Length=435, Percent_Identity=27.5862068965517, Blast_Score=151, Evalue=1e-36, Organism=Caenorhabditis elegans, GI115532065, Length=432, Percent_Identity=27.3148148148148, Blast_Score=150, Evalue=1e-36, Organism=Caenorhabditis elegans, GI32566303, Length=428, Percent_Identity=26.4018691588785, Blast_Score=125, Evalue=7e-29, Organism=Caenorhabditis elegans, GI25141371, Length=294, Percent_Identity=27.891156462585, Blast_Score=87, Evalue=3e-17, Organism=Caenorhabditis elegans, GI32566301, Length=144, Percent_Identity=32.6388888888889, Blast_Score=83, Evalue=5e-16, Organism=Saccharomyces cerevisiae, GI6322852, Length=192, Percent_Identity=53.6458333333333, Blast_Score=194, Evalue=4e-50, Organism=Saccharomyces cerevisiae, GI6325337, Length=437, Percent_Identity=27.6887871853547, Blast_Score=157, Evalue=5e-39, Organism=Saccharomyces cerevisiae, GI6319594, Length=437, Percent_Identity=27.6887871853547, Blast_Score=157, Evalue=5e-39, Organism=Saccharomyces cerevisiae, GI6322937, Length=367, Percent_Identity=30.7901907356948, Blast_Score=154, Evalue=4e-38, Organism=Saccharomyces cerevisiae, GI6320377, Length=428, Percent_Identity=26.6355140186916, Blast_Score=132, Evalue=2e-31, Organism=Saccharomyces cerevisiae, GI6324761, Length=310, Percent_Identity=29.3548387096774, Blast_Score=90, Evalue=9e-19, Organism=Saccharomyces cerevisiae, GI6323320, Length=345, Percent_Identity=26.9565217391304, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24667032, Length=196, Percent_Identity=51.530612244898, Blast_Score=186, Evalue=4e-47, Organism=Drosophila melanogaster, GI24667028, Length=196, Percent_Identity=51.530612244898, Blast_Score=186, Evalue=4e-47, Organism=Drosophila melanogaster, GI24667036, Length=196, Percent_Identity=51.530612244898, Blast_Score=186, Evalue=4e-47, Organism=Drosophila melanogaster, GI24667040, Length=196, Percent_Identity=51.530612244898, Blast_Score=186, Evalue=5e-47, Organism=Drosophila melanogaster, GI116007838, Length=196, Percent_Identity=51.530612244898, Blast_Score=185, Evalue=7e-47, Organism=Drosophila melanogaster, GI24667044, Length=196, Percent_Identity=51.530612244898, Blast_Score=185, Evalue=7e-47, Organism=Drosophila melanogaster, GI45550900, Length=429, Percent_Identity=26.5734265734266, Blast_Score=146, Evalue=4e-35, Organism=Drosophila melanogaster, GI45553807, Length=435, Percent_Identity=25.5172413793103, Blast_Score=140, Evalue=4e-33, Organism=Drosophila melanogaster, GI45553816, Length=435, Percent_Identity=25.5172413793103, Blast_Score=140, Evalue=4e-33, Organism=Drosophila melanogaster, GI24651721, Length=435, Percent_Identity=25.5172413793103, Blast_Score=140, Evalue=4e-33, Organism=Drosophila melanogaster, GI17864154, Length=435, Percent_Identity=25.5172413793103, Blast_Score=140, Evalue=4e-33, Organism=Drosophila melanogaster, GI24652838, Length=439, Percent_Identity=25.7403189066059, Blast_Score=139, Evalue=7e-33, Organism=Drosophila melanogaster, GI17137572, Length=439, Percent_Identity=25.7403189066059, Blast_Score=139, Evalue=7e-33, Organism=Drosophila melanogaster, GI17137380, Length=429, Percent_Identity=24.009324009324, Blast_Score=130, Evalue=3e-30, Organism=Drosophila melanogaster, GI281363316, Length=327, Percent_Identity=27.217125382263, Blast_Score=98, Evalue=2e-20, Organism=Drosophila melanogaster, GI17864358, Length=327, Percent_Identity=27.217125382263, Blast_Score=98, Evalue=2e-20, Organism=Drosophila melanogaster, GI19921738, Length=156, Percent_Identity=33.3333333333333, Blast_Score=77, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002891 - InterPro: IPR000795 - InterPro: IPR011779 - InterPro: IPR009001 - InterPro: IPR004161 - InterPro: IPR009000 [H]
Pfam domain/function: PF01583 APS_kinase; PF00009 GTP_EFTU; PF03144 GTP_EFTU_D2 [H]
EC number: =2.7.7.4; =2.7.1.25 [H]
Molecular weight: Translated: 67772; Mature: 67641
Theoretical pI: Translated: 6.63; Mature: 6.63
Prosite motif: PS00301 EFACTOR_GTP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAAQAPGAPSRDLLRFITCGSVDDGKSTLIGRLLHDSHVIFEDQLRSLASDSQKFGTTG CCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEHHHHHHHHHCCHHHCCCCC EEIDLALLVDGLEAEREQGITIDVAYRFFSTPLRSFIVADTPGHEQYTRNMATGASLASL CCEEEEEEECCHHHHHHCCCEEEEHHHHHHCCHHHEEEECCCCHHHHHHHHHCCCHHHEE AIILIDARKGVLLQTRRHSLICSLLGIRHIVLAINKMDLVDFDKATFDAIVNDYTAFAAH EEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH LAFATIVPIPLSARYGHNVTTRSDRTPWFSGPVLIDCLENVDVASDLNKLPFRFPVQRVN HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHCCCCCCCHHHCC RPNLDFRGYSGTVASGDIRVGDRVTTTPAGQTTSVREIVTADGMLEVARAGEAVTLTLVD CCCCCCCCCCCCEECCCEEECCEEECCCCCCCCHHHHHHHHCCHHHHHHCCCEEEEEEEE EIDVSRGDLLASPDHLPEINDQFAAHIIWMSDRPLISGRSYLARIGTRTISMSVTAIRHK CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHCCCEEEEEHHHHHHH MDVNTGERLAASVLALNEIGLCNVATVRPIAFDPYAANRATGSFIVIDRLTNETVGAGMI HCCCCHHHHHHHHHHHHCCCCCCCCEECCEEECCCCCCCCCCCEEEEEECCCCCCCCCEE LFGLRRGSNVQSQPLLVNREARAAIKRQVPAVVWFTGLSGAGKSTIANCLEKKLHTAGFH EEEECCCCCCCCCCEEECHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCE TMLLDGDNIRQGLNRDLGFTEADRVENIRRVGEVAKLFVDAGLIVICSFISPYRSDRDMV EEEECCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHH RELMPPATFFEVFVDTPLEECMRRDPKGLYSKARAGKIANFTGIDAPYEPPLNPDLHLST HHHCCCHHHHHHHHCCHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEE VGHEPEQLAQKIVDKLATRN CCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure AAAQAPGAPSRDLLRFITCGSVDDGKSTLIGRLLHDSHVIFEDQLRSLASDSQKFGTTG CCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEHHHHHHHHHCCHHHCCCCC EEIDLALLVDGLEAEREQGITIDVAYRFFSTPLRSFIVADTPGHEQYTRNMATGASLASL CCEEEEEEECCHHHHHHCCCEEEEHHHHHHCCHHHEEEECCCCHHHHHHHHHCCCHHHEE AIILIDARKGVLLQTRRHSLICSLLGIRHIVLAINKMDLVDFDKATFDAIVNDYTAFAAH EEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH LAFATIVPIPLSARYGHNVTTRSDRTPWFSGPVLIDCLENVDVASDLNKLPFRFPVQRVN HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHCCCCCCCHHHCC RPNLDFRGYSGTVASGDIRVGDRVTTTPAGQTTSVREIVTADGMLEVARAGEAVTLTLVD CCCCCCCCCCCCEECCCEEECCEEECCCCCCCCHHHHHHHHCCHHHHHHCCCEEEEEEEE EIDVSRGDLLASPDHLPEINDQFAAHIIWMSDRPLISGRSYLARIGTRTISMSVTAIRHK CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHCCCEEEEEHHHHHHH MDVNTGERLAASVLALNEIGLCNVATVRPIAFDPYAANRATGSFIVIDRLTNETVGAGMI HCCCCHHHHHHHHHHHHCCCCCCCCEECCEEECCCCCCCCCCCEEEEEECCCCCCCCCEE LFGLRRGSNVQSQPLLVNREARAAIKRQVPAVVWFTGLSGAGKSTIANCLEKKLHTAGFH EEEECCCCCCCCCCEEECHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCE TMLLDGDNIRQGLNRDLGFTEADRVENIRRVGEVAKLFVDAGLIVICSFISPYRSDRDMV EEEECCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHH RELMPPATFFEVFVDTPLEECMRRDPKGLYSKARAGKIANFTGIDAPYEPPLNPDLHLST HHHCCCHHHHHHHHCCHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEE VGHEPEQLAQKIVDKLATRN CCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA