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The map label for this gene is rfbD [H]

Identifier: 146342041

GI number: 146342041

Start: 5388822

End: 5389664

Strand: Direct

Name: rfbD [H]

Synonym: BRADO5180

Alternate gene names: 146342041

Gene position: 5388822-5389664 (Clockwise)

Preceding gene: 146342040

Following gene: 146342042

Centisome position: 72.27

GC content: 61.21

Gene sequence:

>843_bases
ATGTCCACCCTGACCGATGGAGAGGTCGAGCGGTTCGTGGTCGCGGAGCGCGGCCGCTTCACATGGGCTCGCTGCCGCGA
GGACATCGCGCCGTTCCTGACTCGCCACGTCACATGGCGCGCGCTGGCCGCTGGCGACATCCGATCTAAATACCGCAGAA
CCATGCTGGGTCCGTGGTGGATCACGGCGACCAACGCGATTACCGCCCTGATCATGGGTGCGGTCGCCGGCCGCTTTCTC
GGCGCCGACATGAAGACCTATCTGCCGCACTTCATGGTCAGCATGACGATCTGGAATTTCATCGCCTCCTCGCTGGGCGA
GTCCTGCTACACGATGATCAACGCCGGCGGCATGATCAAGGCCGTGGACATGCCGATCCTGATCCACGTCATGCGCATGG
TTCAGCGCAACCTGATCATCTTCCTCCACAACATTGCGATCATCCCCATCATCTGGCTAATCTATCCCTGGCCGATCGGC
ATCGTCAGCCTGCTCAGCCTGTTCGGGCTGGCGCTGGTCTACGTTTTCATCGTCAGCACATCGACGATCGTCTCGATGAT
ATGCGTCCGCTATCGCGACGTTCCGCCGGTCATGAACGCGATCATTCAGCTGCTGTTCTTCGTTTCGCCGATCATCTGGG
CCCCATCGCAGATCAAGGGCGGCGAACTCGCCGTCGCGCTCAACCCCATTGCCTATCTGCTGGCGATCACCCGCGATCCG
CTGATGGGCCATACTCCGAACCTTGCCAGTTGGGCCGGTGCCGCAGGGTTCATTGCGGTGCTGACGGCCGCCATGATCTA
CATCTACACGCGCTATCGCTCGCGCGTCGTGTACTGGGCCTGA

Upstream 100 bases:

>100_bases
GTGATCCAGCAAGCGCCAGCCGATCGGCCGCTGTCGGCCGCGGCGCTTGAGCGCTTTAAGCTGGAAAACCAAATACTTAG
GGCTGTCGTGAGGTAGAAGC

Downstream 100 bases:

>100_bases
CGTGACAGCCATTCAGGACCTCGGGACCAGCCTCTCATGCCTCTGATCGAAGCCAAGCAACTCGGCATTGAATTTCCCGT
AGCGCCGCCCAACGCCCGGT

Product: putative O-antigene/LPS export system permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 279

Protein sequence:

>280_residues
MSTLTDGEVERFVVAERGRFTWARCREDIAPFLTRHVTWRALAAGDIRSKYRRTMLGPWWITATNAITALIMGAVAGRFL
GADMKTYLPHFMVSMTIWNFIASSLGESCYTMINAGGMIKAVDMPILIHVMRMVQRNLIIFLHNIAIIPIIWLIYPWPIG
IVSLLSLFGLALVYVFIVSTSTIVSMICVRYRDVPPVMNAIIQLLFFVSPIIWAPSQIKGGELAVALNPIAYLLAITRDP
LMGHTPNLASWAGAAGFIAVLTAAMIYIYTRYRSRVVYWA

Sequences:

>Translated_280_residues
MSTLTDGEVERFVVAERGRFTWARCREDIAPFLTRHVTWRALAAGDIRSKYRRTMLGPWWITATNAITALIMGAVAGRFL
GADMKTYLPHFMVSMTIWNFIASSLGESCYTMINAGGMIKAVDMPILIHVMRMVQRNLIIFLHNIAIIPIIWLIYPWPIG
IVSLLSLFGLALVYVFIVSTSTIVSMICVRYRDVPPVMNAIIQLLFFVSPIIWAPSQIKGGELAVALNPIAYLLAITRDP
LMGHTPNLASWAGAAGFIAVLTAAMIYIYTRYRSRVVYWA
>Mature_279_residues
STLTDGEVERFVVAERGRFTWARCREDIAPFLTRHVTWRALAAGDIRSKYRRTMLGPWWITATNAITALIMGAVAGRFLG
ADMKTYLPHFMVSMTIWNFIASSLGESCYTMINAGGMIKAVDMPILIHVMRMVQRNLIIFLHNIAIIPIIWLIYPWPIGI
VSLLSLFGLALVYVFIVSTSTIVSMICVRYRDVPPVMNAIIQLLFFVSPIIWAPSQIKGGELAVALNPIAYLLAITRDPL
MGHTPNLASWAGAAGFIAVLTAAMIYIYTRYRSRVVYWA

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbE [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 31392; Mature: 31261

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTLTDGEVERFVVAERGRFTWARCREDIAPFLTRHVTWRALAAGDIRSKYRRTMLGPWW
CCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
ITATNAITALIMGAVAGRFLGADMKTYLPHFMVSMTIWNFIASSLGESCYTMINAGGMIK
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
AVDMPILIHVMRMVQRNLIIFLHNIAIIPIIWLIYPWPIGIVSLLSLFGLALVYVFIVST
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
STIVSMICVRYRDVPPVMNAIIQLLFFVSPIIWAPSQIKGGELAVALNPIAYLLAITRDP
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHCCC
LMGHTPNLASWAGAAGFIAVLTAAMIYIYTRYRSRVVYWA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECC
>Mature Secondary Structure 
STLTDGEVERFVVAERGRFTWARCREDIAPFLTRHVTWRALAAGDIRSKYRRTMLGPWW
CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
ITATNAITALIMGAVAGRFLGADMKTYLPHFMVSMTIWNFIASSLGESCYTMINAGGMIK
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
AVDMPILIHVMRMVQRNLIIFLHNIAIIPIIWLIYPWPIGIVSLLSLFGLALVYVFIVST
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
STIVSMICVRYRDVPPVMNAIIQLLFFVSPIIWAPSQIKGGELAVALNPIAYLLAITRDP
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHCCC
LMGHTPNLASWAGAAGFIAVLTAAMIYIYTRYRSRVVYWA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7692217 [H]