| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is prpE [H]
Identifier: 146340662
GI number: 146340662
Start: 3872918
End: 3875476
Strand: Reverse
Name: prpE [H]
Synonym: BRADO3710
Alternate gene names: 146340662
Gene position: 3875476-3872918 (Counterclockwise)
Preceding gene: 146340663
Following gene: 146340659
Centisome position: 51.97
GC content: 69.83
Gene sequence:
>2559_bases ATGAACATCGACATCCCCGACTTCGCGCTGGTCGTGCTGATCGGCTCGACCGGCTCCGGCAAGTCGACCTTCGCCGCCAA ACACTTCCTGCCGACCGAGGTGATCTCCTCGGACCATTGCCGCGCGCTGGTGGCCGATGACGAGACCGACCAGAGCGTCT CGGCCGACGCCTTCGATATCGTCCGCGAGATCGCCGGGCGGCGGCTCAAGCATCGCCGCCTTGCCGTGATCGACGCTACC AATGTGCGTCCCGCCGACCGCAAGGGCTGGGTCGAGCTGGCGCGCAAATGGCATGCGCTGCCGGTCGCGATTGTGTTCGA TCCCGGCATCGACATCTGCATCGAACGCAACAGGTCGCGTCCCGAGCGCAGCTTCGGCGGCCCAGTCGTGCAGCGCATGG TCTCGGAGATCCGCCGCGGCCTCGGTGGCCTGCAGCGCGAGGGTTTTCGCCAGGTGTGGAAGCTCGACAGCGTCTCGCGC ATCGAGGCCGCGACGATCGCGCGGCAGCCACTGTGGACCGACAAGCGGCACGACACCGGTCCGTTCGACATCATCGGCGA CGTTCATGGCTGCGCGAGCGAATTGCAGGCGCTGCTGGCCAGGCTCGGCTATCAGGTCGAGTGGCGCGAGCAGGATGGCC GGCGCGCCGTCACGGTGACGCCGCCGGCAGGCCGCAAGGCTGTGTTCGTCGGCGATCTCGTCGACCGCGGACCACGATCG CCGGACGTGCTGCGCATCGTCATGAGCATGGTCGCGTCCGGCGTGGCCTATGCCGTGCAGGGCAACCATGATCGCAAATT CCAGCGCTGGCTGGCCGGCCGCAAGGTCACGATCGCGCATGGCCTGCAGGACACCATCAACCAGCTCGCGAATGAGGATC GCAGCTTCCGCGACGGCCTGCCCGATTTCCTCGACGGCCTGCGCAGCCATGTCTGGCTCGACGGCGGCCGGCTCGCGGTG GCGCATGCCGGGCTGAAAGAGGAGATGATCGGCCGCGGCTCCGGCGCGGTGCGCGAGTTCGCACTGTATGGCGAGACCAC CGGCGAGATCGACGAGTTCGGCCTGCCCGTGCGCGCCGACTGGGCCGCGAACTATCGCGGGCCGACCGCCGTGGTCTATG GCCACACGCCGATGCTGCATGCCGAATGGGTCAACAACACGATCTGCATCGACACCGGCTGCGTGTTCGGCGGACGGCTG ACGGCGCTGCGCTGGCCCGAGCGCGAGCTGGTCGAGGTCGAGGCCGAGCGCGTCTGGTGCGAGCCGGTACGGCCGCTCGG CCTGCGCGCAGGCAGCGCCTCCGCGCAGGCCGAAGCGGATCAGCTGCTCGACATCGACGACGTCAGCGGTCGGCGGTGGA TCGAGACCACGCTGCGCGGCCGCATGGTCGTCGCCGAGGAGAACGCAGCAGCCGCGCTGGAGGTGATGAGCCGCTTCGCG CTGCCGCCGCAATGGCTGGTCTACCTGCCGCCGACGATGTCGCCGTCGGAGACGAGCGCGCGCGACGGCTGGCTCGAGCG GCCCGAGGAGGCGTTCGCGCATTTCCGCGCGCGCAACGTCGCCGAGGTGGTGTGCGAGGAGAAGCACATGGGCTCGCGCG CCGTCATCGCGCTGTGCAGCAGCGCCGACGTCGCTAACGCGCGGTTCGGCATCACAGGCGCGGAGAGCGGCGCGATCTGG ACGCGGACCGGCCGCGCGTTCTTCAACGACGCGGCGATGACCGAGGCATTGCTGGCGCGGCTGCGGAGCGCCGTCGAAAG TGCGGGTCTTTGGCAGGAGCTGCAGACCGACTGGCTGCTGCTCGACGCCGAGATCATGCCGTGGTCGGCCAAGGCCGGCG CCCTGATCGAGAGTCAATACGCACCGGTGGCGGCATCTTCTGTCGCGGGTCTCGACGCCGCATCCGATGCGCTGGCGCGG GCCGCTGCACGCGGCCTCGACGTCACGGCGCTGCGCGACCAGTTCGACGCGCGCGCGGCCCGCGCGCGGCGCTATGGCGC TGCGTGGGCGCCCTATGTCTGGCCGGTCGGCGGGATCGACGATCTCAAGGTCGCGCCGTTCCACCTGCTCGCCAGCGAAG GCCGTGTCTGGTTCGACCAGGATCACGTCTGGCACATGTCGCTGGCCGACCGCCTGGCGGCGGCGGATCCCGTGATCAGG CGCACGCGATGGCGCGTTGTGACTCTGGCCGACGAGACCGCAGTGAACGACGCCACCGCCTGGTGGGAGCAGCTCACGGC CGGCGGCGGCGAGGGCATGGTGGTGAAACCCATGAGCTTCGTCGCGCGCGGGCCGAAGGGCCTGATCCAGCCGGCGCTGA AGGTGCGGGGCGCCGAATATCTGCGCATCATCTACGGCCCGGAATATGATGCGCCCGAGCACATCGCCCGCCTGCGCCAG CGCAAGCTCGAGGGCAAGCGCGCCCTCGCGCTGCGCGAGTTCGCGCTCGGCCACGAGGCGCTGACCCGCTTCGTCGCCCG CGAGCCGTTGCGCCGCGTGCATGAATGCGTGTTCGCCGTGCTGGCTCTCGAAAGCGAGCCGATCGACCCGCGGCTGTGA
Upstream 100 bases:
>100_bases AAACCTTCAATTGCCAGGTCGCCTTCTCCGGCATCGGCCATCACGACGAGACCCTGGGCGCGCCGACACAGATGGCCGTC TTCACCCGCTGAGCACCGTC
Downstream 100 bases:
>100_bases GGACGGCGCTTATCGCTGGCCGACGCTGCGGGCGCCCGCTTCCTTCAGGACTCCTTCGATGTCGGCGGAGCCCGCGGTGA AGCCACCGACCACCACCTCG
Product: putative protein serine-threonine phosphatase
Products: NA
Alternate protein names: Ap4A hydrolase; Diadenosine 5',5'''-P1,P4-tetraphosphate asymmetrical hydrolase; Diadenosine tetraphosphatase [H]
Number of amino acids: Translated: 852; Mature: 852
Protein sequence:
>852_residues MNIDIPDFALVVLIGSTGSGKSTFAAKHFLPTEVISSDHCRALVADDETDQSVSADAFDIVREIAGRRLKHRRLAVIDAT NVRPADRKGWVELARKWHALPVAIVFDPGIDICIERNRSRPERSFGGPVVQRMVSEIRRGLGGLQREGFRQVWKLDSVSR IEAATIARQPLWTDKRHDTGPFDIIGDVHGCASELQALLARLGYQVEWREQDGRRAVTVTPPAGRKAVFVGDLVDRGPRS PDVLRIVMSMVASGVAYAVQGNHDRKFQRWLAGRKVTIAHGLQDTINQLANEDRSFRDGLPDFLDGLRSHVWLDGGRLAV AHAGLKEEMIGRGSGAVREFALYGETTGEIDEFGLPVRADWAANYRGPTAVVYGHTPMLHAEWVNNTICIDTGCVFGGRL TALRWPERELVEVEAERVWCEPVRPLGLRAGSASAQAEADQLLDIDDVSGRRWIETTLRGRMVVAEENAAAALEVMSRFA LPPQWLVYLPPTMSPSETSARDGWLERPEEAFAHFRARNVAEVVCEEKHMGSRAVIALCSSADVANARFGITGAESGAIW TRTGRAFFNDAAMTEALLARLRSAVESAGLWQELQTDWLLLDAEIMPWSAKAGALIESQYAPVAASSVAGLDAASDALAR AAARGLDVTALRDQFDARAARARRYGAAWAPYVWPVGGIDDLKVAPFHLLASEGRVWFDQDHVWHMSLADRLAAADPVIR RTRWRVVTLADETAVNDATAWWEQLTAGGGEGMVVKPMSFVARGPKGLIQPALKVRGAEYLRIIYGPEYDAPEHIARLRQ RKLEGKRALALREFALGHEALTRFVAREPLRRVHECVFAVLALESEPIDPRL
Sequences:
>Translated_852_residues MNIDIPDFALVVLIGSTGSGKSTFAAKHFLPTEVISSDHCRALVADDETDQSVSADAFDIVREIAGRRLKHRRLAVIDAT NVRPADRKGWVELARKWHALPVAIVFDPGIDICIERNRSRPERSFGGPVVQRMVSEIRRGLGGLQREGFRQVWKLDSVSR IEAATIARQPLWTDKRHDTGPFDIIGDVHGCASELQALLARLGYQVEWREQDGRRAVTVTPPAGRKAVFVGDLVDRGPRS PDVLRIVMSMVASGVAYAVQGNHDRKFQRWLAGRKVTIAHGLQDTINQLANEDRSFRDGLPDFLDGLRSHVWLDGGRLAV AHAGLKEEMIGRGSGAVREFALYGETTGEIDEFGLPVRADWAANYRGPTAVVYGHTPMLHAEWVNNTICIDTGCVFGGRL TALRWPERELVEVEAERVWCEPVRPLGLRAGSASAQAEADQLLDIDDVSGRRWIETTLRGRMVVAEENAAAALEVMSRFA LPPQWLVYLPPTMSPSETSARDGWLERPEEAFAHFRARNVAEVVCEEKHMGSRAVIALCSSADVANARFGITGAESGAIW TRTGRAFFNDAAMTEALLARLRSAVESAGLWQELQTDWLLLDAEIMPWSAKAGALIESQYAPVAASSVAGLDAASDALAR AAARGLDVTALRDQFDARAARARRYGAAWAPYVWPVGGIDDLKVAPFHLLASEGRVWFDQDHVWHMSLADRLAAADPVIR RTRWRVVTLADETAVNDATAWWEQLTAGGGEGMVVKPMSFVARGPKGLIQPALKVRGAEYLRIIYGPEYDAPEHIARLRQ RKLEGKRALALREFALGHEALTRFVAREPLRRVHECVFAVLALESEPIDPRL >Mature_852_residues MNIDIPDFALVVLIGSTGSGKSTFAAKHFLPTEVISSDHCRALVADDETDQSVSADAFDIVREIAGRRLKHRRLAVIDAT NVRPADRKGWVELARKWHALPVAIVFDPGIDICIERNRSRPERSFGGPVVQRMVSEIRRGLGGLQREGFRQVWKLDSVSR IEAATIARQPLWTDKRHDTGPFDIIGDVHGCASELQALLARLGYQVEWREQDGRRAVTVTPPAGRKAVFVGDLVDRGPRS PDVLRIVMSMVASGVAYAVQGNHDRKFQRWLAGRKVTIAHGLQDTINQLANEDRSFRDGLPDFLDGLRSHVWLDGGRLAV AHAGLKEEMIGRGSGAVREFALYGETTGEIDEFGLPVRADWAANYRGPTAVVYGHTPMLHAEWVNNTICIDTGCVFGGRL TALRWPERELVEVEAERVWCEPVRPLGLRAGSASAQAEADQLLDIDDVSGRRWIETTLRGRMVVAEENAAAALEVMSRFA LPPQWLVYLPPTMSPSETSARDGWLERPEEAFAHFRARNVAEVVCEEKHMGSRAVIALCSSADVANARFGITGAESGAIW TRTGRAFFNDAAMTEALLARLRSAVESAGLWQELQTDWLLLDAEIMPWSAKAGALIESQYAPVAASSVAGLDAASDALAR AAARGLDVTALRDQFDARAARARRYGAAWAPYVWPVGGIDDLKVAPFHLLASEGRVWFDQDHVWHMSLADRLAAADPVIR RTRWRVVTLADETAVNDATAWWEQLTAGGGEGMVVKPMSFVARGPKGLIQPALKVRGAEYLRIIYGPEYDAPEHIARLRQ RKLEGKRALALREFALGHEALTRFVAREPLRRVHECVFAVLALESEPIDPRL
Specific function: Asymmetrically hydrolyzes Ap4p to yield AMP and ATP [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prpE family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004843 - InterPro: IPR006186 [H]
Pfam domain/function: PF00149 Metallophos [H]
EC number: =3.6.1.17 [H]
Molecular weight: Translated: 94006; Mature: 94006
Theoretical pI: Translated: 6.77; Mature: 6.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIDIPDFALVVLIGSTGSGKSTFAAKHFLPTEVISSDHCRALVADDETDQSVSADAFDI CCCCCCCEEEEEEEECCCCCCCCHHHHHCCCHHHHCCCCCEEEEECCCCCCCCCHHHHHH VREIAGRRLKHRRLAVIDATNVRPADRKGWVELARKWHALPVAIVFDPGIDICIERNRSR HHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCEEEECCCCC PERSFGGPVVQRMVSEIRRGLGGLQREGFRQVWKLDSVSRIEAATIARQPLWTDKRHDTG CCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCC PFDIIGDVHGCASELQALLARLGYQVEWREQDGRRAVTVTPPAGRKAVFVGDLVDRGPRS CCEEECCHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEECCCCCCCEEEEEHHHHCCCCC PDVLRIVMSMVASGVAYAVQGNHDRKFQRWLAGRKVTIAHGLQDTINQLANEDRSFRDGL HHHHHHHHHHHHCCEEEEEECCCHHHHHHHHCCCEEEEHHCHHHHHHHHHCCCCHHHCCC PDFLDGLRSHVWLDGGRLAVAHAGLKEEMIGRGSGAVREFALYGETTGEIDEFGLPVRAD HHHHHHHHHHEEECCCEEEEEECCHHHHHHCCCCCHHHHHEEECCCCCCHHHCCCCEEEC WAANYRGPTAVVYGHTPMLHAEWVNNTICIDTGCVFGGRLTALRWPERELVEVEAERVWC CCCCCCCCEEEEECCCCEEEHHHCCCEEEEECCCCCCCEEEEEECCCHHHHHHHHHHHCC EPVRPLGLRAGSASAQAEADQLLDIDDVSGRRWIETTLRGRMVVAEENAAAALEVMSRFA CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHCCEEEEECCCHHHHHHHHHHHC LPPQWLVYLPPTMSPSETSARDGWLERPEEAFAHFRARNVAEVVCEEKHMGSRAVIALCS CCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC SADVANARFGITGAESGAIWTRTGRAFFNDAAMTEALLARLRSAVESAGLWQELQTDWLL CCCCCCCEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE LDAEIMPWSAKAGALIESQYAPVAASSVAGLDAASDALARAAARGLDVTALRDQFDARAA EEEEECCCCCCCCCHHHCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH RARRYGAAWAPYVWPVGGIDDLKVAPFHLLASEGRVWFDQDHVWHMSLADRLAAADPVIR HHHHCCCCCCCCCCCCCCCCCCCCCCHHEEECCCCEEECCCCEEEHHHHHHHHHCCHHHH RTRWRVVTLADETAVNDATAWWEQLTAGGGEGMVVKPMSFVARGPKGLIQPALKVRGAEY CCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEEECCHHHHHCCCHHHHHHHHHHCCCEE LRIIYGPEYDAPEHIARLRQRKLEGKRALALREFALGHEALTRFVAREPLRRVHECVFAV EEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH LALESEPIDPRL HHHCCCCCCCCC >Mature Secondary Structure MNIDIPDFALVVLIGSTGSGKSTFAAKHFLPTEVISSDHCRALVADDETDQSVSADAFDI CCCCCCCEEEEEEEECCCCCCCCHHHHHCCCHHHHCCCCCEEEEECCCCCCCCCHHHHHH VREIAGRRLKHRRLAVIDATNVRPADRKGWVELARKWHALPVAIVFDPGIDICIERNRSR HHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCEEEECCCCC PERSFGGPVVQRMVSEIRRGLGGLQREGFRQVWKLDSVSRIEAATIARQPLWTDKRHDTG CCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCC PFDIIGDVHGCASELQALLARLGYQVEWREQDGRRAVTVTPPAGRKAVFVGDLVDRGPRS CCEEECCHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEECCCCCCCEEEEEHHHHCCCCC PDVLRIVMSMVASGVAYAVQGNHDRKFQRWLAGRKVTIAHGLQDTINQLANEDRSFRDGL HHHHHHHHHHHHCCEEEEEECCCHHHHHHHHCCCEEEEHHCHHHHHHHHHCCCCHHHCCC PDFLDGLRSHVWLDGGRLAVAHAGLKEEMIGRGSGAVREFALYGETTGEIDEFGLPVRAD HHHHHHHHHHEEECCCEEEEEECCHHHHHHCCCCCHHHHHEEECCCCCCHHHCCCCEEEC WAANYRGPTAVVYGHTPMLHAEWVNNTICIDTGCVFGGRLTALRWPERELVEVEAERVWC CCCCCCCCEEEEECCCCEEEHHHCCCEEEEECCCCCCCEEEEEECCCHHHHHHHHHHHCC EPVRPLGLRAGSASAQAEADQLLDIDDVSGRRWIETTLRGRMVVAEENAAAALEVMSRFA CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHCCEEEEECCCHHHHHHHHHHHC LPPQWLVYLPPTMSPSETSARDGWLERPEEAFAHFRARNVAEVVCEEKHMGSRAVIALCS CCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC SADVANARFGITGAESGAIWTRTGRAFFNDAAMTEALLARLRSAVESAGLWQELQTDWLL CCCCCCCEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE LDAEIMPWSAKAGALIESQYAPVAASSVAGLDAASDALARAAARGLDVTALRDQFDARAA EEEEECCCCCCCCCHHHCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH RARRYGAAWAPYVWPVGGIDDLKVAPFHLLASEGRVWFDQDHVWHMSLADRLAAADPVIR HHHHCCCCCCCCCCCCCCCCCCCCCCHHEEECCCCEEECCCCEEEHHHHHHHHHCCHHHH RTRWRVVTLADETAVNDATAWWEQLTAGGGEGMVVKPMSFVARGPKGLIQPALKVRGAEY CCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEEECCHHHHHCCCHHHHHHHHHHCCCEE LRIIYGPEYDAPEHIARLRQRKLEGKRALALREFALGHEALTRFVAREPLRRVHECVFAV EEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH LALESEPIDPRL HHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA