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The map label for this gene is 146339635

Identifier: 146339635

GI number: 146339635

Start: 2819707

End: 2820546

Strand: Direct

Name: 146339635

Synonym: BRADO2628

Alternate gene names: NA

Gene position: 2819707-2820546 (Clockwise)

Preceding gene: 146339634

Following gene: 146339636

Centisome position: 37.81

GC content: 67.38

Gene sequence:

>840_bases
ATGACCCTCGAAGCCACCGCAGACAATATCGATCACGGCACGGCGGCCTCCGGCAGCTCGTTCTATGCCGCCATGCGCAT
TCTGCCGCGCGCCCAGCGCGACGCGATGTTCCAGGTCTACAGCTTCTGCCGCGAGGTCGACGACATCGCCGATTCCGATG
GCCCGCGGCCCGAGCGGCTGGCGGCCCTGCAGAAATGGCGCGACGACATCGACGCGCTGTACCAGGGCAATCCGCCGCCG
CGGCTGCGCGACTACGTCGCCTCGGTGAAGACCTTCGGCCTGAAGCGCGAGGACTTCCTCGCCATCATCGACGGTATGGA
GATGGACGTGCCGCAAGAGATCCGCGCGCCGGATCTCGCCACGCTCGACCTCTATTGCGATCGCGTCGCCAGCGCCGTCG
GCCGGCTCTCGGTGCGCATCTTCGGCATGCCCGAGGAGGACGGCATCCTGCTCGCGCATCATCTCGGCCGCGCGCTGCAG
CTCACCAACATCCTGCGCGACATCGACGAGGACGCGGCAATCGGCCGGCTCTATCTGCCGCGCGAGGCGCTGCTGTTCGC
CGGCATCACCGGCGACGATCCCGCCAAGGTGACGCAAGAGCGCGCGCTGCCCAAGGTCTGCAACTCGGTCGCCGTCCGCG
CCAAGACGCATTTCGAGAAGGCCGACGAGATCATGCGGCGCAACCGCCGCCGCGCCGTGCGCGCGCCGCGGATCATGTCG
AAATACTACCGCGCCGTGTTCGATCTGCTGATGGCCCGTGGCTTCGCGCTGCCGCGCGAGCCCGTGCGCGTGAGCAAGCT
CACGAAGATCAGCATCATCCTCCGTTACGCTCTGATCTGA

Upstream 100 bases:

>100_bases
TGACACCGGCCGGCATGCTCGGCCTGACCTTCACGTCTGTGATGGGCGAGATCGCCCGCCGCGTTGCCGGCCGCCATCCC
CAGACCAAATCGGCGGGCGC

Downstream 100 bases:

>100_bases
TGACCAAGACCGCTCACATCATCGGCGCCGGGATCTCCGGCTTCTCCGCCGGCGTGCGCCTCGCCAAGGCGGGCTACACC
GTGCACGTCCACGAGGCCAC

Product: putative phytoene synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 278

Protein sequence:

>279_residues
MTLEATADNIDHGTAASGSSFYAAMRILPRAQRDAMFQVYSFCREVDDIADSDGPRPERLAALQKWRDDIDALYQGNPPP
RLRDYVASVKTFGLKREDFLAIIDGMEMDVPQEIRAPDLATLDLYCDRVASAVGRLSVRIFGMPEEDGILLAHHLGRALQ
LTNILRDIDEDAAIGRLYLPREALLFAGITGDDPAKVTQERALPKVCNSVAVRAKTHFEKADEIMRRNRRRAVRAPRIMS
KYYRAVFDLLMARGFALPREPVRVSKLTKISIILRYALI

Sequences:

>Translated_279_residues
MTLEATADNIDHGTAASGSSFYAAMRILPRAQRDAMFQVYSFCREVDDIADSDGPRPERLAALQKWRDDIDALYQGNPPP
RLRDYVASVKTFGLKREDFLAIIDGMEMDVPQEIRAPDLATLDLYCDRVASAVGRLSVRIFGMPEEDGILLAHHLGRALQ
LTNILRDIDEDAAIGRLYLPREALLFAGITGDDPAKVTQERALPKVCNSVAVRAKTHFEKADEIMRRNRRRAVRAPRIMS
KYYRAVFDLLMARGFALPREPVRVSKLTKISIILRYALI
>Mature_278_residues
TLEATADNIDHGTAASGSSFYAAMRILPRAQRDAMFQVYSFCREVDDIADSDGPRPERLAALQKWRDDIDALYQGNPPPR
LRDYVASVKTFGLKREDFLAIIDGMEMDVPQEIRAPDLATLDLYCDRVASAVGRLSVRIFGMPEEDGILLAHHLGRALQL
TNILRDIDEDAAIGRLYLPREALLFAGITGDDPAKVTQERALPKVCNSVAVRAKTHFEKADEIMRRNRRRAVRAPRIMSK
YYRAVFDLLMARGFALPREPVRVSKLTKISIILRYALI

Specific function: Catalyzes the reaction from prephytoene diphosphate to phytoene. Probably part of an operon y4aABCD involved in the synthesis of an isoprenoid compound [H]

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phytoene/squalene synthase family [H]

Homologues:

Organism=Homo sapiens, GI124517691, Length=202, Percent_Identity=22.2772277227723, Blast_Score=69, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002060
- InterPro:   IPR017828
- InterPro:   IPR019845
- InterPro:   IPR008949 [H]

Pfam domain/function: PF00494 SQS_PSY [H]

EC number: =2.5.1.32 [H]

Molecular weight: Translated: 31433; Mature: 31302

Theoretical pI: Translated: 8.76; Mature: 8.76

Prosite motif: PS01044 SQUALEN_PHYTOEN_SYN_1 ; PS01045 SQUALEN_PHYTOEN_SYN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLEATADNIDHGTAASGSSFYAAMRILPRAQRDAMFQVYSFCREVDDIADSDGPRPERL
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
AALQKWRDDIDALYQGNPPPRLRDYVASVKTFGLKREDFLAIIDGMEMDVPQEIRAPDLA
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHCCCCCH
TLDLYCDRVASAVGRLSVRIFGMPEEDGILLAHHLGRALQLTNILRDIDEDAAIGRLYLP
HHHHHHHHHHHHHHHHEEEEECCCCCCCEEHHHHHHHHHHHHHHHHHHCCCHHHCCCCCC
REALLFAGITGDDPAKVTQERALPKVCNSVAVRAKTHFEKADEIMRRNRRRAVRAPRIMS
HHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KYYRAVFDLLMARGFALPREPVRVSKLTKISIILRYALI
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TLEATADNIDHGTAASGSSFYAAMRILPRAQRDAMFQVYSFCREVDDIADSDGPRPERL
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
AALQKWRDDIDALYQGNPPPRLRDYVASVKTFGLKREDFLAIIDGMEMDVPQEIRAPDLA
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHCCCCCH
TLDLYCDRVASAVGRLSVRIFGMPEEDGILLAHHLGRALQLTNILRDIDEDAAIGRLYLP
HHHHHHHHHHHHHHHHEEEEECCCCCCCEEHHHHHHHHHHHHHHHHHHCCCHHHCCCCCC
REALLFAGITGDDPAKVTQERALPKVCNSVAVRAKTHFEKADEIMRRNRRRAVRAPRIMS
HHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KYYRAVFDLLMARGFALPREPVRVSKLTKISIILRYALI
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]