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The map label for this gene is kdgD [C]

Identifier: 146338636

GI number: 146338636

Start: 1676340

End: 1677284

Strand: Reverse

Name: kdgD [C]

Synonym: BRADO1565

Alternate gene names: 146338636

Gene position: 1677284-1676340 (Counterclockwise)

Preceding gene: 146338637

Following gene: 146338635

Centisome position: 22.49

GC content: 65.19

Gene sequence:

>945_bases
ATGAGCAAGATGACCCCTCAGGAAATGGCTGCGAAGATCGGCAGCGGCCTGCTCTCCTTCCCCGTGACGCCGTTCAAGGC
CGACTACTCCTTCGACGAGACCACCTACCGTTCCAACATGGACTGGCTGTGCGGTTATGACGTGGCCGGCCTGTTCGCCG
CCGGCGGCACCGGCGAGTTCTTCTCGCTGACGGCAGCCGAGGTGCCCGAAGTGGTGAAGGTCGCCGTCGACGAGACCAAG
GGCCGCGTGCCCGTGCTTGCCGGCACCGGCTACGGCACCGCGATCGCGCGCGAGATCGCGATGTCAGCCGAGAAGGCCGG
TGCCGACGGCCTGCTGCTGCTGCCGCCCTATCTGATGCACGCCGAGCAGGAGGGCCTTGCCGCCCATGTCGAGGCGGTCT
GCAAATCGGTCAAGATCGGCGTCATCGTCTACAACCGCGACAACGCGATCCTGCAACCCGACACCCTGGCGCGGCTGTGC
GAGCGCTGCCCGAACCTGGTCGGCTACAAGGACGGCATCGGCGACATCGAGCTGATGACCCGCGTCTACACCAAGATGGG
CGACCGCCTGACCTATATCGGCGGCCTGCCGACTGCGGAAACCTTTGCGCTGCCCTATCTCGACATGGGCGTGACGACCT
ACTCCTCTGCCGTGTTCAACTTCGTGCCGGAGTTCGCCACCAACTTCTATGCCGCAGTGCGCAAGCGCGATCACGCCACG
ATCCATGCCGGATTGAAGGATTTCATTTTGCCGCTGATCGCGATACGCAACCGCAAGAAGGGCTACGCGGTCTCGATCAT
CAAGGCCGGCATGAAGGTGATCGGCCGCGACTCCGGCCCGGTCCGCCTGCCGCTGACTGACCTGACCGAGGCCGAGATGG
CCGAGCTGACCGCGCTGGTGAAGGCGCTGCCAGTGGCCGCCTCGGCGCAGCAGGCGGCAGAGTAA

Upstream 100 bases:

>100_bases
TGGACCGGCATCGAACTTGGTCCTACGACAGCGCCGTGAGGAATGCCCGCTGTGCAATCGCCGCGCTCATTCCAAAGGAC
ATTCGTGAAGGACCCGCGCG

Downstream 100 bases:

>100_bases
CTGCAAGGCTGCGCTGTGTCCCCTCATCCTGAGGAGCCTGCACAGCAGGCGTCTCGAAGGATGAGGCCACAGCCAGGGCC
CCATGGTTCGAGACGGCGCT

Product: 5-dehydro-4-deoxyglucarate dehydratase

Products: NA

Alternate protein names: 5-keto-4-deoxy-glucarate dehydratase; KDGDH [H]

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MSKMTPQEMAAKIGSGLLSFPVTPFKADYSFDETTYRSNMDWLCGYDVAGLFAAGGTGEFFSLTAAEVPEVVKVAVDETK
GRVPVLAGTGYGTAIAREIAMSAEKAGADGLLLLPPYLMHAEQEGLAAHVEAVCKSVKIGVIVYNRDNAILQPDTLARLC
ERCPNLVGYKDGIGDIELMTRVYTKMGDRLTYIGGLPTAETFALPYLDMGVTTYSSAVFNFVPEFATNFYAAVRKRDHAT
IHAGLKDFILPLIAIRNRKKGYAVSIIKAGMKVIGRDSGPVRLPLTDLTEAEMAELTALVKALPVAASAQQAAE

Sequences:

>Translated_314_residues
MSKMTPQEMAAKIGSGLLSFPVTPFKADYSFDETTYRSNMDWLCGYDVAGLFAAGGTGEFFSLTAAEVPEVVKVAVDETK
GRVPVLAGTGYGTAIAREIAMSAEKAGADGLLLLPPYLMHAEQEGLAAHVEAVCKSVKIGVIVYNRDNAILQPDTLARLC
ERCPNLVGYKDGIGDIELMTRVYTKMGDRLTYIGGLPTAETFALPYLDMGVTTYSSAVFNFVPEFATNFYAAVRKRDHAT
IHAGLKDFILPLIAIRNRKKGYAVSIIKAGMKVIGRDSGPVRLPLTDLTEAEMAELTALVKALPVAASAQQAAE
>Mature_313_residues
SKMTPQEMAAKIGSGLLSFPVTPFKADYSFDETTYRSNMDWLCGYDVAGLFAAGGTGEFFSLTAAEVPEVVKVAVDETKG
RVPVLAGTGYGTAIAREIAMSAEKAGADGLLLLPPYLMHAEQEGLAAHVEAVCKSVKIGVIVYNRDNAILQPDTLARLCE
RCPNLVGYKDGIGDIELMTRVYTKMGDRLTYIGGLPTAETFALPYLDMGVTTYSSAVFNFVPEFATNFYAAVRKRDHATI
HAGLKDFILPLIAIRNRKKGYAVSIIKAGMKVIGRDSGPVRLPLTDLTEAEMAELTALVKALPVAASAQQAAE

Specific function: Unknown

COG id: COG0329

COG function: function code EM; Dihydrodipicolinate synthase/N-acetylneuraminate lyase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DHDPS family [H]

Homologues:

Organism=Escherichia coli, GI87082415, Length=272, Percent_Identity=31.6176470588235, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1786463, Length=270, Percent_Identity=30.3703703703704, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788823, Length=193, Percent_Identity=27.4611398963731, Blast_Score=78, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR017655
- InterPro:   IPR002220 [H]

Pfam domain/function: PF00701 DHDPS [H]

EC number: =4.2.1.41 [H]

Molecular weight: Translated: 33715; Mature: 33584

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKMTPQEMAAKIGSGLLSFPVTPFKADYSFDETTYRSNMDWLCGYDVAGLFAAGGTGEF
CCCCCHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHCCCCCEECCCHHHHHCCCCCCCC
FSLTAAEVPEVVKVAVDETKGRVPVLAGTGYGTAIAREIAMSAEKAGADGLLLLPPYLMH
EEECHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEECCHHHHH
AEQEGLAAHVEAVCKSVKIGVIVYNRDNAILQPDTLARLCERCPNLVGYKDGIGDIELMT
CCCCCHHHHHHHHHHHCEEEEEEECCCCCEECCHHHHHHHHHCCCCCCCCCCCCHHHHHH
RVYTKMGDRLTYIGGLPTAETFALPYLDMGVTTYSSAVFNFVPEFATNFYAAVRKRDHAT
HHHHHHCCCEEEECCCCCHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
IHAGLKDFILPLIAIRNRKKGYAVSIIKAGMKVIGRDSGPVRLPLTDLTEAEMAELTALV
HHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHH
KALPVAASAQQAAE
HHHCCHHHHHHHCC
>Mature Secondary Structure 
SKMTPQEMAAKIGSGLLSFPVTPFKADYSFDETTYRSNMDWLCGYDVAGLFAAGGTGEF
CCCCHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHCCCCCEECCCHHHHHCCCCCCCC
FSLTAAEVPEVVKVAVDETKGRVPVLAGTGYGTAIAREIAMSAEKAGADGLLLLPPYLMH
EEECHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEECCHHHHH
AEQEGLAAHVEAVCKSVKIGVIVYNRDNAILQPDTLARLCERCPNLVGYKDGIGDIELMT
CCCCCHHHHHHHHHHHCEEEEEEECCCCCEECCHHHHHHHHHCCCCCCCCCCCCHHHHHH
RVYTKMGDRLTYIGGLPTAETFALPYLDMGVTTYSSAVFNFVPEFATNFYAAVRKRDHAT
HHHHHHCCCEEEECCCCCHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
IHAGLKDFILPLIAIRNRKKGYAVSIIKAGMKVIGRDSGPVRLPLTDLTEAEMAELTALV
HHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHH
KALPVAASAQQAAE
HHHCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12597275 [H]