Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
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Accession | NC_009445 |
Length | 7,456,587 |
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The map label for this gene is kipR [H]
Identifier: 146338618
GI number: 146338618
Start: 1655003
End: 1655779
Strand: Reverse
Name: kipR [H]
Synonym: BRADO1546
Alternate gene names: 146338618
Gene position: 1655779-1655003 (Counterclockwise)
Preceding gene: 146338626
Following gene: 146338611
Centisome position: 22.21
GC content: 70.4
Gene sequence:
>777_bases TTGAGACTGCTGCGCGTGCTCGCCGAGGGCGATCCCAAGGGGCTGCGGCTGAAGGACATCGCCGAGGCCGCCGGCTGCAG CCAGCCGACCGCGCATCGCATGCTGCAGGATCTCGCCGCCGAGGGCTTCGCCGAGCAGGCCGCGGGCAAGCGCTATCGCC TGGCGCTCGACTTCTATGTGATCGCGGCGCGCGCCGGCCAGGCCAGCGGACTGCGCGATGCCGCGCGACCGGCGCTGCTG CGGCTCTCCGCCACCCTGAGCGACACGATCTTCCTGCTGGTGCGCAACGGCTTCGATGCGGTGTGCCTCGATCGCGTCGA GGGCCCGTTTCCGATCCGCTCCTTCACCGGCGACATCGGCGGCAAGGTGCCGCTCGGCCTCGGCCAGGGCAGCCTCGCCA TCCTCGCAAATCTGCCGGAGGACGAACAGGAGGCGGTGATCCGCTTCAACATCCCGCGCCTGCTCGACCGCGGCTTTCTC GACGAGGCCTCGCTGCGCAGCGCGATGGCGCTGGCCCGCGCGCAGGGCTGGGTCAACACCAGCACTGGACTCATTCCCGG CATGGCGGGCGTCGGCGTGCCCGTGCTCGATGCGCAGGGCCACGCGGTGGCGGCGCTGAGCGTCGGGACATTGGCGGAGC GGCTGAATGCGGATCGCCTGCCGCATGTCGTGAAGATCCTGCAGAGCGAGGCACACGCGCTGGCGGGCAAGCTCAACCCG TTCGATGTCGCCTTGCGCTATCCGTCGCGGAGCCTGAGCACGATCGGCGGGAGTTAG
Upstream 100 bases:
>100_bases TTCTGCTATATGAAATCTCCGATCGCTTACTCTCTCCTGCCTTTCGCCAATGCAGATGACGAACGCCGATAACGACTCCA CATCCAGTCTGCGACGGGCT
Downstream 100 bases:
>100_bases CTGCTTTGCATCCCCTAGCAACGTCATTCCGGGGCAAGGCCGGAGGCCTTGAACCCGGAATCCCGATATTGGCTTGCGTT GGTTGTCACCAACCTCGGGA
Product: IclR family transcriptional regulator
Products: NA
Alternate protein names: Kip operon repressor protein [H]
Number of amino acids: Translated: 258; Mature: 258
Protein sequence:
>258_residues MRLLRVLAEGDPKGLRLKDIAEAAGCSQPTAHRMLQDLAAEGFAEQAAGKRYRLALDFYVIAARAGQASGLRDAARPALL RLSATLSDTIFLLVRNGFDAVCLDRVEGPFPIRSFTGDIGGKVPLGLGQGSLAILANLPEDEQEAVIRFNIPRLLDRGFL DEASLRSAMALARAQGWVNTSTGLIPGMAGVGVPVLDAQGHAVAALSVGTLAERLNADRLPHVVKILQSEAHALAGKLNP FDVALRYPSRSLSTIGGS
Sequences:
>Translated_258_residues MRLLRVLAEGDPKGLRLKDIAEAAGCSQPTAHRMLQDLAAEGFAEQAAGKRYRLALDFYVIAARAGQASGLRDAARPALL RLSATLSDTIFLLVRNGFDAVCLDRVEGPFPIRSFTGDIGGKVPLGLGQGSLAILANLPEDEQEAVIRFNIPRLLDRGFL DEASLRSAMALARAQGWVNTSTGLIPGMAGVGVPVLDAQGHAVAALSVGTLAERLNADRLPHVVKILQSEAHALAGKLNP FDVALRYPSRSLSTIGGS >Mature_258_residues MRLLRVLAEGDPKGLRLKDIAEAAGCSQPTAHRMLQDLAAEGFAEQAAGKRYRLALDFYVIAARAGQASGLRDAARPALL RLSATLSDTIFLLVRNGFDAVCLDRVEGPFPIRSFTGDIGGKVPLGLGQGSLAILANLPEDEQEAVIRFNIPRLLDRGFL DEASLRSAMALARAQGWVNTSTGLIPGMAGVGVPVLDAQGHAVAALSVGTLAERLNADRLPHVVKILQSEAHALAGKLNP FDVALRYPSRSLSTIGGS
Specific function: Transcriptional repressor of the kip gene-containing operon [H]
COG id: COG1414
COG function: function code K; Transcriptional regulator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]
Homologues:
Organism=Escherichia coli, GI1788131, Length=241, Percent_Identity=23.2365145228216, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1786468, Length=223, Percent_Identity=26.0089686098655, Blast_Score=69, Evalue=4e-13,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014757 - InterPro: IPR005471 - InterPro: IPR011991 [H]
Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]
EC number: NA
Molecular weight: Translated: 27252; Mature: 27252
Theoretical pI: Translated: 8.74; Mature: 8.74
Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLLRVLAEGDPKGLRLKDIAEAAGCSQPTAHRMLQDLAAEGFAEQAAGKRYRLALDFYV CHHHEEECCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEE IAARAGQASGLRDAARPALLRLSATLSDTIFLLVRNGFDAVCLDRVEGPFPIRSFTGDIG EEECCCCCCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCEEEHHCCCCCCCHHHHCCCCC GKVPLGLGQGSLAILANLPEDEQEAVIRFNIPRLLDRGFLDEASLRSAMALARAQGWVNT CCCCEECCCCCEEEEECCCCCCCCEEEEECCHHHHHCCCCCHHHHHHHHHHHHHCCCCCC STGLIPGMAGVGVPVLDAQGHAVAALSVGTLAERLNADRLPHVVKILQSEAHALAGKLNP CCCCCCCCCCCCCEEECCCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC FDVALRYPSRSLSTIGGS CEEEEECCCCCCCCCCCC >Mature Secondary Structure MRLLRVLAEGDPKGLRLKDIAEAAGCSQPTAHRMLQDLAAEGFAEQAAGKRYRLALDFYV CHHHEEECCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEE IAARAGQASGLRDAARPALLRLSATLSDTIFLLVRNGFDAVCLDRVEGPFPIRSFTGDIG EEECCCCCCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCEEEHHCCCCCCCHHHHCCCCC GKVPLGLGQGSLAILANLPEDEQEAVIRFNIPRLLDRGFLDEASLRSAMALARAQGWVNT CCCCEECCCCCEEEEECCCCCCCCEEEEECCHHHHHCCCCCHHHHHHHHHHHHHCCCCCC STGLIPGMAGVGVPVLDAQGHAVAALSVGTLAERLNADRLPHVVKILQSEAHALAGKLNP CCCCCCCCCCCCCEEECCCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC FDVALRYPSRSLSTIGGS CEEEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8969502; 9384377 [H]