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The map label for this gene is yciR [C]

Identifier: 146337728

GI number: 146337728

Start: 618682

End: 620754

Strand: Reverse

Name: yciR [C]

Synonym: BRADO0600

Alternate gene names: 146337728

Gene position: 620754-618682 (Counterclockwise)

Preceding gene: 146337729

Following gene: 146337726

Centisome position: 8.32

GC content: 67.05

Gene sequence:

>2073_bases
TTGCCGATGATGACGATCCTGTCCTGCCTGCCTGCCGATCATGACCTCCGCTATGTCGCCGCTGCGCTTCTGGTGTGCGT
GCTCGGCTCGATTCTCTCGATGCGATTGCTCGCCCGTGTCCGCCGCAACACCGGGCTGCGCCGGCTTCACCTGCTGTTCC
TGGCCGGACTGGTCGCCGGCGGCACGGTATGGACGACGCATTTCGCCGCGATCCTCGGCTATGACGCGCCCGGCAACCGC
TCGTTCGAAGCGGGCCTGACATTCGCCTCGCTCGGCCTCGCCGTGCTGTTCTCCTGGCTCGGTTTCTTCGTCACGACGCG
CACGCAGCGCGGCCCGCTGATCGAGATCGGCGGCGCTCTCTTCGGCTTCGGCATCGCCGCGATGCACTACACGGGCATGA
GCGCGCTGAATCTCGACGGCGTCAGGACGTGGCACCCGCCGGCGATCTGGTTGTCGCTGTTTCTGGCGATCGGATTCGGC
GCGGTCGCCGCGAACCGCATCGCGCGTCCGGTGACGCGCTTCTGCAAATATGGCGGCTCGCTCGCCATGGTCCTTGCAAT
CCTGAGCCTGCATTTCACCGGCATGGCGGCGCTGACCTTGGTGCCGATGGCCGGGGCAGAGGCGCCCGCGCAGGCGCTCT
CCGACAGCGTGATGCTGATCAGCATCGTCACCGGCATCGGACTGATCATGGCCATGGCGGCGTCGGCCTACATGATCGAC
ATGCAGGCGACGCAGGAGGCGGTCGAGGGCTATCGGCAGCTGGCCCTGCAGGACCCGCTGACCGGCCTGGCCAACCGCAA
CGGCCTCGCGCAGCGACTCGCGCCATTGCTGACGGAGGGCGACGAAACCGCGCATCTGGTCGTGCTCGCGATCGACCTCG
ACCGTTTCAAGGACATCAACGACGCGCATGGCCACGCCGCAGGAGATGCCGTGCTGACGGCGATCGCGCAGCGGATTGCG
TCCACGCTGCAGCCGGGCGAGTTCCTGGCGCGGATCGGCGGCGACGAGTTCGTCGCCGTCAAGAGCGAGATCTTCGCGCG
CGCCGAGGCCGCCAGGTTCGCCGAGCGCATGCGCGCGCTGGTGCTCGCGCCCGTCGAGTGGGAGGAACGGAGCCTGTCCG
TCGGCTGCAGCATCGGCGTCGCGCTCCATCCCGAGCACGGCTTGACGGCGGACGAATTGCTCACCCGTGCCGACCTGGCC
ATGTATCGCGCCAAGAGCCTCGGCCAGGGCAAGATCTGCACCTACGAACCGTCGATGGACGAGGCCAGCCGGCGCCGCGC
CGAGCTCGCCATCGACTTGAAGCGCGCGCTGGTGCGCAACGAGTTCGAGCTGCACTACCAGGTGCAGAACGACACGAGGA
GCGGCGAGATCATCGGCTTCGAGGCGCTGCTGCGCTGGAATCATCCGGTGAAGGGCCGCGTGCCGCCGAACGATTTCATC
CCGATGGCCGAGCAGACGGGGCTGATCGTCGACATCGGCGATTGGGTGCTGCGCACCGCCTGCGCGACCGCCGCGAGCTG
GAGCCAGCCGTTCAAGGTCGCCGTCAACGTCGCCCCGATGCAGCTCAACCACGATCTGCCGAGGCGCGTCGCCGAGGTGC
TGCGCGAGACGGGGCTGGCGCCGGATCGGCTGGAGATCGAGCTGACCGAAACGGGGATCATCGCCGACCGCCAGCACGCT
CTGCAGGTGATGCAGGCGCTGAAGGGAATCGGCGTCACCGTGGCCATGGACGATTTCGGCACCGGCTATTCGTCGCTGTC
GACCCTGCAGGTGTTTCCGTTCGACAAGATCAAGGTCGACAAGAGCTTCATCCAGTCGGTCGAGACCAGCGTGCATGCCG
CGGCGATCGTCAAGGCGACGCTGCTGTTGGGCCGCAGCCTGAACATTCCCGTGCTCGCCGAAGGCGTCGAGACCGAGCAG
CACCTCGCCTTTCTGCGCGAGGAAGGCTGCACCAGCGTGCAGGGATTTCTGTTCGGCAAGCCGATGCCGAACGAAGCGAT
CAGCCGGATGATCCGGGACGTCCGAGTTTCGCAGGCACCAAGCGAGACGATGAAGGACGCCGCAGCCGCCTGA

Upstream 100 bases:

>100_bases
CGGGCCGACTCTCTGCCCGTATTGACGCTTTGCTAACCGCGATCCCGGCGCGCCAAAACGCGGCGCAGCTCGGTTCGTAG
CTGGCCTGCGTAGGGGTTCA

Downstream 100 bases:

>100_bases
TCACAGACCTCGCCCTCGCTTGTTTCTCCGTCGTCATGGCCGGGCTTGTCCCAGCCATCCATGCCGCTCGGCATGCTCGG
ACGACGTGGATGCCCGGGAC

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 690; Mature: 689

Protein sequence:

>690_residues
MPMMTILSCLPADHDLRYVAAALLVCVLGSILSMRLLARVRRNTGLRRLHLLFLAGLVAGGTVWTTHFAAILGYDAPGNR
SFEAGLTFASLGLAVLFSWLGFFVTTRTQRGPLIEIGGALFGFGIAAMHYTGMSALNLDGVRTWHPPAIWLSLFLAIGFG
AVAANRIARPVTRFCKYGGSLAMVLAILSLHFTGMAALTLVPMAGAEAPAQALSDSVMLISIVTGIGLIMAMAASAYMID
MQATQEAVEGYRQLALQDPLTGLANRNGLAQRLAPLLTEGDETAHLVVLAIDLDRFKDINDAHGHAAGDAVLTAIAQRIA
STLQPGEFLARIGGDEFVAVKSEIFARAEAARFAERMRALVLAPVEWEERSLSVGCSIGVALHPEHGLTADELLTRADLA
MYRAKSLGQGKICTYEPSMDEASRRRAELAIDLKRALVRNEFELHYQVQNDTRSGEIIGFEALLRWNHPVKGRVPPNDFI
PMAEQTGLIVDIGDWVLRTACATAASWSQPFKVAVNVAPMQLNHDLPRRVAEVLRETGLAPDRLEIELTETGIIADRQHA
LQVMQALKGIGVTVAMDDFGTGYSSLSTLQVFPFDKIKVDKSFIQSVETSVHAAAIVKATLLLGRSLNIPVLAEGVETEQ
HLAFLREEGCTSVQGFLFGKPMPNEAISRMIRDVRVSQAPSETMKDAAAA

Sequences:

>Translated_690_residues
MPMMTILSCLPADHDLRYVAAALLVCVLGSILSMRLLARVRRNTGLRRLHLLFLAGLVAGGTVWTTHFAAILGYDAPGNR
SFEAGLTFASLGLAVLFSWLGFFVTTRTQRGPLIEIGGALFGFGIAAMHYTGMSALNLDGVRTWHPPAIWLSLFLAIGFG
AVAANRIARPVTRFCKYGGSLAMVLAILSLHFTGMAALTLVPMAGAEAPAQALSDSVMLISIVTGIGLIMAMAASAYMID
MQATQEAVEGYRQLALQDPLTGLANRNGLAQRLAPLLTEGDETAHLVVLAIDLDRFKDINDAHGHAAGDAVLTAIAQRIA
STLQPGEFLARIGGDEFVAVKSEIFARAEAARFAERMRALVLAPVEWEERSLSVGCSIGVALHPEHGLTADELLTRADLA
MYRAKSLGQGKICTYEPSMDEASRRRAELAIDLKRALVRNEFELHYQVQNDTRSGEIIGFEALLRWNHPVKGRVPPNDFI
PMAEQTGLIVDIGDWVLRTACATAASWSQPFKVAVNVAPMQLNHDLPRRVAEVLRETGLAPDRLEIELTETGIIADRQHA
LQVMQALKGIGVTVAMDDFGTGYSSLSTLQVFPFDKIKVDKSFIQSVETSVHAAAIVKATLLLGRSLNIPVLAEGVETEQ
HLAFLREEGCTSVQGFLFGKPMPNEAISRMIRDVRVSQAPSETMKDAAAA
>Mature_689_residues
PMMTILSCLPADHDLRYVAAALLVCVLGSILSMRLLARVRRNTGLRRLHLLFLAGLVAGGTVWTTHFAAILGYDAPGNRS
FEAGLTFASLGLAVLFSWLGFFVTTRTQRGPLIEIGGALFGFGIAAMHYTGMSALNLDGVRTWHPPAIWLSLFLAIGFGA
VAANRIARPVTRFCKYGGSLAMVLAILSLHFTGMAALTLVPMAGAEAPAQALSDSVMLISIVTGIGLIMAMAASAYMIDM
QATQEAVEGYRQLALQDPLTGLANRNGLAQRLAPLLTEGDETAHLVVLAIDLDRFKDINDAHGHAAGDAVLTAIAQRIAS
TLQPGEFLARIGGDEFVAVKSEIFARAEAARFAERMRALVLAPVEWEERSLSVGCSIGVALHPEHGLTADELLTRADLAM
YRAKSLGQGKICTYEPSMDEASRRRAELAIDLKRALVRNEFELHYQVQNDTRSGEIIGFEALLRWNHPVKGRVPPNDFIP
MAEQTGLIVDIGDWVLRTACATAASWSQPFKVAVNVAPMQLNHDLPRRVAEVLRETGLAPDRLEIELTETGIIADRQHAL
QVMQALKGIGVTVAMDDFGTGYSSLSTLQVFPFDKIKVDKSFIQSVETSVHAAAIVKATLLLGRSLNIPVLAEGVETEQH
LAFLREEGCTSVQGFLFGKPMPNEAISRMIRDVRVSQAPSETMKDAAAA

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=437, Percent_Identity=37.2997711670481, Blast_Score=287, Evalue=2e-78,
Organism=Escherichia coli, GI87081921, Length=438, Percent_Identity=34.2465753424658, Blast_Score=256, Evalue=3e-69,
Organism=Escherichia coli, GI226510982, Length=446, Percent_Identity=30.2690582959641, Blast_Score=199, Evalue=7e-52,
Organism=Escherichia coli, GI1788502, Length=274, Percent_Identity=30.6569343065693, Blast_Score=141, Evalue=2e-34,
Organism=Escherichia coli, GI87081980, Length=244, Percent_Identity=33.1967213114754, Blast_Score=136, Evalue=4e-33,
Organism=Escherichia coli, GI1787055, Length=242, Percent_Identity=35.5371900826446, Blast_Score=135, Evalue=7e-33,
Organism=Escherichia coli, GI1790496, Length=236, Percent_Identity=33.0508474576271, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI87081845, Length=240, Percent_Identity=33.75, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1786507, Length=242, Percent_Identity=32.6446280991736, Blast_Score=126, Evalue=5e-30,
Organism=Escherichia coli, GI87081743, Length=241, Percent_Identity=30.2904564315353, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI1788381, Length=206, Percent_Identity=37.8640776699029, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI87082096, Length=440, Percent_Identity=22.9545454545455, Blast_Score=107, Evalue=3e-24,
Organism=Escherichia coli, GI1788849, Length=235, Percent_Identity=29.7872340425532, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI1787262, Length=221, Percent_Identity=28.0542986425339, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI1787802, Length=173, Percent_Identity=36.4161849710983, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1788956, Length=152, Percent_Identity=36.1842105263158, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI145693134, Length=170, Percent_Identity=34.7058823529412, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87081977, Length=164, Percent_Identity=33.5365853658537, Blast_Score=84, Evalue=4e-17,
Organism=Escherichia coli, GI87081881, Length=183, Percent_Identity=36.0655737704918, Blast_Score=83, Evalue=6e-17,
Organism=Escherichia coli, GI1787410, Length=232, Percent_Identity=29.7413793103448, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI87082007, Length=228, Percent_Identity=30.2631578947368, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI1788085, Length=163, Percent_Identity=31.2883435582822, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1786584, Length=313, Percent_Identity=25.8785942492013, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1787816, Length=231, Percent_Identity=30.3030303030303, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI87081974, Length=89, Percent_Identity=38.2022471910112, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 74540; Mature: 74409

Theoretical pI: Translated: 6.56; Mature: 6.56

Prosite motif: PS50924 MHYT ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPMMTILSCLPADHDLRYVAAALLVCVLGSILSMRLLARVRRNTGLRRLHLLFLAGLVAG
CCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
GTVWTTHFAAILGYDAPGNRSFEAGLTFASLGLAVLFSWLGFFVTTRTQRGPLIEIGGAL
CHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHH
FGFGIAAMHYTGMSALNLDGVRTWHPPAIWLSLFLAIGFGAVAANRIARPVTRFCKYGGS
HHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
LAMVLAILSLHFTGMAALTLVPMAGAEAPAQALSDSVMLISIVTGIGLIMAMAASAYMID
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHEEE
MQATQEAVEGYRQLALQDPLTGLANRNGLAQRLAPLLTEGDETAHLVVLAIDLDRFKDIN
HHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHCCCCCCEEEEEEEEEHHHCCCCC
DAHGHAAGDAVLTAIAQRIASTLQPGEFLARIGGDEFVAVKSEIFARAEAARFAERMRAL
CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHH
VLAPVEWEERSLSVGCSIGVALHPEHGLTADELLTRADLAMYRAKSLGQGKICTYEPSMD
HCCCCCCCCCCEEECEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
EASRRRAELAIDLKRALVRNEFELHYQVQNDTRSGEIIGFEALLRWNHPVKGRVPPNDFI
HHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEHHHHHHCCCCCCCCCCCCCCC
PMAEQTGLIVDIGDWVLRTACATAASWSQPFKVAVNVAPMQLNHDLPRRVAEVLRETGLA
CCCCCCCEEEECHHHHHHHHHHHHHCCCCCEEEEEEEECEECCCCHHHHHHHHHHHCCCC
PDRLEIELTETGIIADRQHALQVMQALKGIGVTVAMDDFGTGYSSLSTLQVFPFDKIKVD
CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEECCCCHHHHH
KSFIQSVETSVHAAAIVKATLLLGRSLNIPVLAEGVETEQHLAFLREEGCTSVQGFLFGK
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHCCCCCCCCEECCC
PMPNEAISRMIRDVRVSQAPSETMKDAAAA
CCCHHHHHHHHHHHHHCCCCHHHHHHHCCC
>Mature Secondary Structure 
PMMTILSCLPADHDLRYVAAALLVCVLGSILSMRLLARVRRNTGLRRLHLLFLAGLVAG
CHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
GTVWTTHFAAILGYDAPGNRSFEAGLTFASLGLAVLFSWLGFFVTTRTQRGPLIEIGGAL
CHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHH
FGFGIAAMHYTGMSALNLDGVRTWHPPAIWLSLFLAIGFGAVAANRIARPVTRFCKYGGS
HHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
LAMVLAILSLHFTGMAALTLVPMAGAEAPAQALSDSVMLISIVTGIGLIMAMAASAYMID
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHEEE
MQATQEAVEGYRQLALQDPLTGLANRNGLAQRLAPLLTEGDETAHLVVLAIDLDRFKDIN
HHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHCCCCCCEEEEEEEEEHHHCCCCC
DAHGHAAGDAVLTAIAQRIASTLQPGEFLARIGGDEFVAVKSEIFARAEAARFAERMRAL
CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHH
VLAPVEWEERSLSVGCSIGVALHPEHGLTADELLTRADLAMYRAKSLGQGKICTYEPSMD
HCCCCCCCCCCEEECEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
EASRRRAELAIDLKRALVRNEFELHYQVQNDTRSGEIIGFEALLRWNHPVKGRVPPNDFI
HHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEHHHHHHCCCCCCCCCCCCCCC
PMAEQTGLIVDIGDWVLRTACATAASWSQPFKVAVNVAPMQLNHDLPRRVAEVLRETGLA
CCCCCCCEEEECHHHHHHHHHHHHHCCCCCEEEEEEEECEECCCCHHHHHHHHHHHCCCC
PDRLEIELTETGIIADRQHALQVMQALKGIGVTVAMDDFGTGYSSLSTLQVFPFDKIKVD
CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEECCCCHHHHH
KSFIQSVETSVHAAAIVKATLLLGRSLNIPVLAEGVETEQHLAFLREEGCTSVQGFLFGK
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHCCCCCCCCEECCC
PMPNEAISRMIRDVRVSQAPSETMKDAAAA
CCCHHHHHHHHHHHHHCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]