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The map label for this gene is yhcM [H]

Identifier: 146337548

GI number: 146337548

Start: 408263

End: 409444

Strand: Direct

Name: yhcM [H]

Synonym: BRADO0402

Alternate gene names: 146337548

Gene position: 408263-409444 (Clockwise)

Preceding gene: 146337547

Following gene: 146337549

Centisome position: 5.48

GC content: 65.57

Gene sequence:

>1182_bases
ATGTTGTCCACTCCCTCAGACGCGTTCCGCGCGCAGTATCAGTCGCTGGTCGACACCGGCGCGATCGAGGCCGACCCGGC
CCAGGCCGAGGTCGCCGATGCCCTGGCGGCGCTGGAGCGGCGCCTCTCCACCTACAAGCCGGCGCGCAAGCAGAGCCTGT
TCGGCCGCCTCTTTTCCGACAAGAGCGAGCCGCCGAGCGGCCTCTATGTCCATGGCGAGGTCGGTCGCGGCAAGACCATG
CTGATGGACCTGTTCTTCCAGACCTGTCCGGTCGAGCACAAGCGCCGCGCGCATTTCCACGAGTTCATGGCCGAGGTGCA
CGAGCGCATTTACGGCTATCGCCAGAACATCGCGCGCGGCGAGCTCGGCGATGCCGACGTGATCGGGCTCACCGCGCAGG
CGATCTTCGACCAGGCCTGGCTGCTCTGCTTCGACGAATTCCACGTCACCGATATCGCCGATGCGATGATCCTGGGACGG
CTGTTCGCAAAACTGTTCGAGCTCGGCACCGTGGTGGTCGCGACCTCCAACGTCGCGCCGGAAGACCTCTACAAGGGCGG
CCTCAACCGCGCGCTGTTCCTGCCCTTCATCAAGCAGATCGCCGATCACATGGACGTGGTGCGGCTCGATGCACGCACCG
ATTTCCGGCTGGAGAAACTCGCCGGCGTGAAGATGTGGCTGGTGCCGGCCGACGTCGATGCGCGCGCCGCGCTCGACAAG
GCCTGGGGCCGGTTGACCGGCAATGCCCGCTGCAAGCCGCGGGACATGACGATCAAGGGCCGCATCCTGCACGTCCCGTG
CTCGGCCAATGGCGTCGCCCGCTTCGGCTTTGCGGATCTATGCGAGAAGCCGCTCGCCGCGTCCGACTATCTGCGGCTCG
CGCACGACTACCATACGATCCTGATCGACCACGTTCCGGTGATGGACTACGCCGAGCGCAACGCCGCCAAGCGCTTCATC
ACCCTGATCGATACGCTCTACGACAATGCCGTGAAGCTGATCGCCTCGGCCGAAGCCGACCCGATCTCGCTCTACGTCGC
GACCGAGGGCATCGAGGCCATGGAGTTCAAGCGCACCTCGTCGCGCCTGATCGAGATGGGTTCGGAGTCCTACTTGGCCC
TCCCGCACGGCCGGAAGGATTCGGCCGCCTCCGGGACTTCTACGGGCCTGGTCGAAACCTGA

Upstream 100 bases:

>100_bases
TTTGCGTGCCATATACCACGATCCCACGGTCCCGCTGCATGGCGGCTTCCACCATTTGCGGATTGCATTTTCCGTTAGTC
TCATGACCTAGAGTGGGCTC

Downstream 100 bases:

>100_bases
CAAACACCGCCTTTCGGGCAGCGCCCGGCGCCGGGCACACAGTCGCGAAAAGGCCACGTCAATCATGCTGAAAGGATCAT
CAGCAGCCGCCGTCCGGTCC

Product: AFG1 family ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MLSTPSDAFRAQYQSLVDTGAIEADPAQAEVADALAALERRLSTYKPARKQSLFGRLFSDKSEPPSGLYVHGEVGRGKTM
LMDLFFQTCPVEHKRRAHFHEFMAEVHERIYGYRQNIARGELGDADVIGLTAQAIFDQAWLLCFDEFHVTDIADAMILGR
LFAKLFELGTVVVATSNVAPEDLYKGGLNRALFLPFIKQIADHMDVVRLDARTDFRLEKLAGVKMWLVPADVDARAALDK
AWGRLTGNARCKPRDMTIKGRILHVPCSANGVARFGFADLCEKPLAASDYLRLAHDYHTILIDHVPVMDYAERNAAKRFI
TLIDTLYDNAVKLIASAEADPISLYVATEGIEAMEFKRTSSRLIEMGSESYLALPHGRKDSAASGTSTGLVET

Sequences:

>Translated_393_residues
MLSTPSDAFRAQYQSLVDTGAIEADPAQAEVADALAALERRLSTYKPARKQSLFGRLFSDKSEPPSGLYVHGEVGRGKTM
LMDLFFQTCPVEHKRRAHFHEFMAEVHERIYGYRQNIARGELGDADVIGLTAQAIFDQAWLLCFDEFHVTDIADAMILGR
LFAKLFELGTVVVATSNVAPEDLYKGGLNRALFLPFIKQIADHMDVVRLDARTDFRLEKLAGVKMWLVPADVDARAALDK
AWGRLTGNARCKPRDMTIKGRILHVPCSANGVARFGFADLCEKPLAASDYLRLAHDYHTILIDHVPVMDYAERNAAKRFI
TLIDTLYDNAVKLIASAEADPISLYVATEGIEAMEFKRTSSRLIEMGSESYLALPHGRKDSAASGTSTGLVET
>Mature_393_residues
MLSTPSDAFRAQYQSLVDTGAIEADPAQAEVADALAALERRLSTYKPARKQSLFGRLFSDKSEPPSGLYVHGEVGRGKTM
LMDLFFQTCPVEHKRRAHFHEFMAEVHERIYGYRQNIARGELGDADVIGLTAQAIFDQAWLLCFDEFHVTDIADAMILGR
LFAKLFELGTVVVATSNVAPEDLYKGGLNRALFLPFIKQIADHMDVVRLDARTDFRLEKLAGVKMWLVPADVDARAALDK
AWGRLTGNARCKPRDMTIKGRILHVPCSANGVARFGFADLCEKPLAASDYLRLAHDYHTILIDHVPVMDYAERNAAKRFI
TLIDTLYDNAVKLIASAEADPISLYVATEGIEAMEFKRTSSRLIEMGSESYLALPHGRKDSAASGTSTGLVET

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=397, Percent_Identity=39.7984886649874, Blast_Score=274, Evalue=1e-73,
Organism=Escherichia coli, GI1789627, Length=376, Percent_Identity=38.8297872340425, Blast_Score=248, Evalue=6e-67,
Organism=Caenorhabditis elegans, GI17505769, Length=421, Percent_Identity=34.6793349168646, Blast_Score=237, Evalue=8e-63,
Organism=Saccharomyces cerevisiae, GI6320783, Length=320, Percent_Identity=37.1875, Blast_Score=194, Evalue=2e-50,
Organism=Drosophila melanogaster, GI20129913, Length=422, Percent_Identity=35.781990521327, Blast_Score=228, Evalue=4e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 43544; Mature: 43544

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSTPSDAFRAQYQSLVDTGAIEADPAQAEVADALAALERRLSTYKPARKQSLFGRLFSD
CCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
KSEPPSGLYVHGEVGRGKTMLMDLFFQTCPVEHKRRAHFHEFMAEVHERIYGYRQNIARG
CCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
ELGDADVIGLTAQAIFDQAWLLCFDEFHVTDIADAMILGRLFAKLFELGTVVVATSNVAP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCH
EDLYKGGLNRALFLPFIKQIADHMDVVRLDARTDFRLEKLAGVKMWLVPADVDARAALDK
HHHHHCCCCHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHCCCEEEEEECCCCHHHHHHH
AWGRLTGNARCKPRDMTIKGRILHVPCSANGVARFGFADLCEKPLAASDYLRLAHDYHTI
HHHHCCCCCCCCCCCCEEECEEEEECCCCCCCEECCHHHHHCCCCCHHHHHHHHHHHHEE
LIDHVPVMDYAERNAAKRFITLIDTLYDNAVKLIASAEADPISLYVATEGIEAMEFKRTS
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHH
SRLIEMGSESYLALPHGRKDSAASGTSTGLVET
HHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLSTPSDAFRAQYQSLVDTGAIEADPAQAEVADALAALERRLSTYKPARKQSLFGRLFSD
CCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
KSEPPSGLYVHGEVGRGKTMLMDLFFQTCPVEHKRRAHFHEFMAEVHERIYGYRQNIARG
CCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
ELGDADVIGLTAQAIFDQAWLLCFDEFHVTDIADAMILGRLFAKLFELGTVVVATSNVAP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCH
EDLYKGGLNRALFLPFIKQIADHMDVVRLDARTDFRLEKLAGVKMWLVPADVDARAALDK
HHHHHCCCCHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHCCCEEEEEECCCCHHHHHHH
AWGRLTGNARCKPRDMTIKGRILHVPCSANGVARFGFADLCEKPLAASDYLRLAHDYHTI
HHHHCCCCCCCCCCCCEEECEEEEECCCCCCCEECCHHHHHCCCCCHHHHHHHHHHHHEE
LIDHVPVMDYAERNAAKRFITLIDTLYDNAVKLIASAEADPISLYVATEGIEAMEFKRTS
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHH
SRLIEMGSESYLALPHGRKDSAASGTSTGLVET
HHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]