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The map label for this gene is yggS [C]

Identifier: 146337353

GI number: 146337353

Start: 196868

End: 197551

Strand: Reverse

Name: yggS [C]

Synonym: BRADO0186

Alternate gene names: 146337353

Gene position: 197551-196868 (Counterclockwise)

Preceding gene: 146337355

Following gene: 146337350

Centisome position: 2.65

GC content: 68.13

Gene sequence:

>684_bases
GTGCCCGACTCGACCGTAGCAACCTCGTCTTCACCATCCGCGCTCGCGGCGGTCGAGCAGGAGATCCAGCGCGCCTGCAG
CGACGCCAAGCGCGACCGCTCCGCGGTGACGCTGATCGCGGTGTCGAAAACCTTCGCCGCTGACGCGATCGAGCCCGTGA
TCCTGGCGGGCCAGCGCGTGTTCGGCGAGAACCGGGTTCAGGAAGCCAAGGGGAAATGGCCTGTCATGATGGCGGCGCAT
CCGGGGCTGTCGCTGCACCTGATCGGACCGCTGCAGTCCAACAAGGCCAAGGAGGCGGTGGCGCTGTTCCATGCCATCCA
CTCGGTCGACCGTCCGAGCCTGTGCTCGGCGCTGGCCAAGGAGATCGGCGCCCAGGGCCGGCATCCGCAGCTGTTCGTCC
AGATCAACACCGGCGAGGAGCCGCAGAAGGCGGGCATCGCGCCTGGCGATGCCGACGCCTTCATCGCCGCCTGCCGACGG
GATTACGGACTCGAGATTTCCGGCCTGATGTGCATCCCGCCGGTCGACGAGGCGCCGGGTCCGCATTTTGCGCTCACGGC
CAAGATCGCGGCCCGCAACGGGCTGGCAAACTTGTCGATGGGCATGAGCGCCGATTTCGCCGCCGCGATCCAGTTCGGCG
CCACCCATGTGCGGGTGGGCTCGGCGATCTTCGGCCACCGCTAG

Upstream 100 bases:

>100_bases
CCCCCGGCGAGCAGGGTAAGGGGAAGGGTTCAAGAACCCTTTTTCGAACTCCGTAAAATTGCAGCCAAACCCGTAAATCT
ACCGAACCACGGATGTCATC

Downstream 100 bases:

>100_bases
GCGAGGTGCCGCCCGAGCCGCGCTCGCGATGACCGCCATCTGTCAGTCGAACCTGACCGACACCCGCCCCAGGTCGCCAA
AATCAGCTTCCATGTGATCG

Product: putative signal peptide

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MPDSTVATSSSPSALAAVEQEIQRACSDAKRDRSAVTLIAVSKTFAADAIEPVILAGQRVFGENRVQEAKGKWPVMMAAH
PGLSLHLIGPLQSNKAKEAVALFHAIHSVDRPSLCSALAKEIGAQGRHPQLFVQINTGEEPQKAGIAPGDADAFIAACRR
DYGLEISGLMCIPPVDEAPGPHFALTAKIAARNGLANLSMGMSADFAAAIQFGATHVRVGSAIFGHR

Sequences:

>Translated_227_residues
MPDSTVATSSSPSALAAVEQEIQRACSDAKRDRSAVTLIAVSKTFAADAIEPVILAGQRVFGENRVQEAKGKWPVMMAAH
PGLSLHLIGPLQSNKAKEAVALFHAIHSVDRPSLCSALAKEIGAQGRHPQLFVQINTGEEPQKAGIAPGDADAFIAACRR
DYGLEISGLMCIPPVDEAPGPHFALTAKIAARNGLANLSMGMSADFAAAIQFGATHVRVGSAIFGHR
>Mature_226_residues
PDSTVATSSSPSALAAVEQEIQRACSDAKRDRSAVTLIAVSKTFAADAIEPVILAGQRVFGENRVQEAKGKWPVMMAAHP
GLSLHLIGPLQSNKAKEAVALFHAIHSVDRPSLCSALAKEIGAQGRHPQLFVQINTGEEPQKAGIAPGDADAFIAACRRD
YGLEISGLMCIPPVDEAPGPHFALTAKIAARNGLANLSMGMSADFAAAIQFGATHVRVGSAIFGHR

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=238, Percent_Identity=35.2941176470588, Blast_Score=109, Evalue=3e-24,
Organism=Escherichia coli, GI1789321, Length=226, Percent_Identity=37.6106194690265, Blast_Score=119, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI17533025, Length=208, Percent_Identity=35.5769230769231, Blast_Score=99, Evalue=2e-21,
Organism=Drosophila melanogaster, GI45550861, Length=213, Percent_Identity=37.5586854460094, Blast_Score=109, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 23753; Mature: 23622

Theoretical pI: Translated: 7.62; Mature: 7.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDSTVATSSSPSALAAVEQEIQRACSDAKRDRSAVTLIAVSKTFAADAIEPVILAGQRV
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECHHHHHHCCHHHHHCCHH
FGENRVQEAKGKWPVMMAAHPGLSLHLIGPLQSNKAKEAVALFHAIHSVDRPSLCSALAK
HCCHHHHHHCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
EIGAQGRHPQLFVQINTGEEPQKAGIAPGDADAFIAACRRDYGLEISGLMCIPPVDEAPG
HHCCCCCCCEEEEEEECCCCHHHCCCCCCCHHHHHHHHHHCCCCEECCEEEECCCCCCCC
PHFALTAKIAARNGLANLSMGMSADFAAAIQFGATHVRVGSAIFGHR
CCEEEEEEEHHCCCCCCCCCCCCCCHHHHHHHCCCEEEECCHHHCCC
>Mature Secondary Structure 
PDSTVATSSSPSALAAVEQEIQRACSDAKRDRSAVTLIAVSKTFAADAIEPVILAGQRV
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECHHHHHHCCHHHHHCCHH
FGENRVQEAKGKWPVMMAAHPGLSLHLIGPLQSNKAKEAVALFHAIHSVDRPSLCSALAK
HCCHHHHHHCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
EIGAQGRHPQLFVQINTGEEPQKAGIAPGDADAFIAACRRDYGLEISGLMCIPPVDEAPG
HHCCCCCCCEEEEEEECCCCHHHCCCCCCCHHHHHHHHHHCCCCEECCEEEECCCCCCCC
PHFALTAKIAARNGLANLSMGMSADFAAAIQFGATHVRVGSAIFGHR
CCEEEEEEEHHCCCCCCCCCCCCCCHHHHHHHCCCEEEECCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]