| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is pehX [H]
Identifier: 146300860
GI number: 146300860
Start: 3689225
End: 3690754
Strand: Reverse
Name: pehX [H]
Synonym: Fjoh_3115
Alternate gene names: 146300860
Gene position: 3690754-3689225 (Counterclockwise)
Preceding gene: 146300861
Following gene: 146300859
Centisome position: 60.54
GC content: 35.56
Gene sequence:
>1530_bases ATGAAAATAAATTTTAAAATCGTACTGTTGATATTTTGTATTTCCTTATCTGTTTCGGCACAGAAAGTATTTGATATTAA AAAATATGGTGCTGTAGGAGATGGAAAAACTTTGAATACAAAAGCAATCCAAAAAGCCATTGATGCAGCCAATAAAAGTA AAGGCGGAAAAGTTCTTTTTTCTAAAGGCACATTTCTGTCTGGAAGCATTGTTTTAAAAAGTGACGTGGAATTGTTTTTT GAAGAAGGTGCCATTTTGCTTGGAAGCACAAATCCGGAAGATTATCCAAAATACGATGGAATTCGTGCTTTTATTATTGC AAGCGACTCCAAAAATATTGCGGTAAACGGAAAAGGAATTATAGACGGACAGGGAAGAGAATTAGCTTTGGCAATTGACA GTCTGCATCATACAGGAGTGCGAATTGACCCAAAATACAATTACAGAAGAATGCGCCCTGAAGATGGAAGAGGAAAATTG ATTTCGTTTGTAAAATGCGATTCGATTACGATGACTCAAATTACCTTGAAAAACAGCCCAGGCTGGACACAATGTTTTAG AGAATGCAAAAACATTATCATTGATTTTATGAAAGTAGAAAGCAGAGCGTATTGGAACAATGACGGAATCGACCTTGACG GCTGCGAAAATGCCCGAATAACCAATTGTAATGTAAACGCTGCCGATGATGGAATCTGTTTAAAATCTGAAGTGCCGGGA TTGCATAATAACAATATTTATATTGGGAATTGTACCATTAGATCAAGTGCCAATGCTGTAAAATTTGGAACAGGTTCTTA CGGAAGTTTTAAAAACGTTACAATCGAAAACATTAAAGTTTTTGACACTTTTAGATCGGCGGTTGCGATCGAATCGGTAG ACGGAGCTGAAATCGAAAACATCAAAGTTTCGGATATTACAGCCGTAAATACTGGAAATGCAATTTTAATTCGTTTAGGA CACCGAAATGGAGAAAAAGCTGGATATATCAAAAATGTATCCGTAAAGAATGTAAAAGTGCAGATTCCGTTTGGGCGTCC AGATATTGATTATGATATGCGCGGACCAGAAGTTGATTATTTCCATAATCCGTTTCCGTCTTCGATTGCAGGAATTCCGG GACATTTGATCGAAAATGTGACCTTAGAAAATATTGAAATTATTTATCCAGGAAAAGCTTCAAAAGGAATGGCATATCAT CCGTTAAGCCGATTAAAAGATGTAAAAGAAAACATAAACGGCTATCCTGAATTTACGATGTTTGGAGAACTGCCTTCCTG GGGATTTTATGTGCGCCACGTACACGGAATCCAGATGAAAAATATCAAATTAGTTTTGGATAAAGAAGATTTCCGTCCCG CTTTTGTTTTTGATGATGTGAAAGATTTGACAATGAAAACTATTGATGTTCCTTCTGATAAAATAAATCAAATTGTTTTT AAAGATGTTTTATCAAGCAATTTGGACAGCGAATCTTTAAAAAGAAAAATCGAACCAGAGCAAAATAAGTTTGAATTGCC TTCAAAGTAA
Upstream 100 bases:
>100_bases AATTTCTTTTAAAAAAATCCGTGGAATCTGCTTAAATCTTTTTAAATCTGCGTGAAAAACTTAGCAATACTATCGAGAAT AAAAATTAAAATGATAATCA
Downstream 100 bases:
>100_bases TCAGATTTAAACAAATGAAGATTTTAAATAATCTATTAATAAACACATAGAAACATAGAATAAAAAATAAAGAAGAGTTT TAAAAAAACTAGTTTTTCAC
Product: glycoside hydrolase family protein
Products: NA
Alternate protein names: Exo-PG [H]
Number of amino acids: Translated: 509; Mature: 509
Protein sequence:
>509_residues MKINFKIVLLIFCISLSVSAQKVFDIKKYGAVGDGKTLNTKAIQKAIDAANKSKGGKVLFSKGTFLSGSIVLKSDVELFF EEGAILLGSTNPEDYPKYDGIRAFIIASDSKNIAVNGKGIIDGQGRELALAIDSLHHTGVRIDPKYNYRRMRPEDGRGKL ISFVKCDSITMTQITLKNSPGWTQCFRECKNIIIDFMKVESRAYWNNDGIDLDGCENARITNCNVNAADDGICLKSEVPG LHNNNIYIGNCTIRSSANAVKFGTGSYGSFKNVTIENIKVFDTFRSAVAIESVDGAEIENIKVSDITAVNTGNAILIRLG HRNGEKAGYIKNVSVKNVKVQIPFGRPDIDYDMRGPEVDYFHNPFPSSIAGIPGHLIENVTLENIEIIYPGKASKGMAYH PLSRLKDVKENINGYPEFTMFGELPSWGFYVRHVHGIQMKNIKLVLDKEDFRPAFVFDDVKDLTMKTIDVPSDKINQIVF KDVLSSNLDSESLKRKIEPEQNKFELPSK
Sequences:
>Translated_509_residues MKINFKIVLLIFCISLSVSAQKVFDIKKYGAVGDGKTLNTKAIQKAIDAANKSKGGKVLFSKGTFLSGSIVLKSDVELFF EEGAILLGSTNPEDYPKYDGIRAFIIASDSKNIAVNGKGIIDGQGRELALAIDSLHHTGVRIDPKYNYRRMRPEDGRGKL ISFVKCDSITMTQITLKNSPGWTQCFRECKNIIIDFMKVESRAYWNNDGIDLDGCENARITNCNVNAADDGICLKSEVPG LHNNNIYIGNCTIRSSANAVKFGTGSYGSFKNVTIENIKVFDTFRSAVAIESVDGAEIENIKVSDITAVNTGNAILIRLG HRNGEKAGYIKNVSVKNVKVQIPFGRPDIDYDMRGPEVDYFHNPFPSSIAGIPGHLIENVTLENIEIIYPGKASKGMAYH PLSRLKDVKENINGYPEFTMFGELPSWGFYVRHVHGIQMKNIKLVLDKEDFRPAFVFDDVKDLTMKTIDVPSDKINQIVF KDVLSSNLDSESLKRKIEPEQNKFELPSK >Mature_509_residues MKINFKIVLLIFCISLSVSAQKVFDIKKYGAVGDGKTLNTKAIQKAIDAANKSKGGKVLFSKGTFLSGSIVLKSDVELFF EEGAILLGSTNPEDYPKYDGIRAFIIASDSKNIAVNGKGIIDGQGRELALAIDSLHHTGVRIDPKYNYRRMRPEDGRGKL ISFVKCDSITMTQITLKNSPGWTQCFRECKNIIIDFMKVESRAYWNNDGIDLDGCENARITNCNVNAADDGICLKSEVPG LHNNNIYIGNCTIRSSANAVKFGTGSYGSFKNVTIENIKVFDTFRSAVAIESVDGAEIENIKVSDITAVNTGNAILIRLG HRNGEKAGYIKNVSVKNVKVQIPFGRPDIDYDMRGPEVDYFHNPFPSSIAGIPGHLIENVTLENIEIIYPGKASKGMAYH PLSRLKDVKENINGYPEFTMFGELPSWGFYVRHVHGIQMKNIKLVLDKEDFRPAFVFDDVKDLTMKTIDVPSDKINQIVF KDVLSSNLDSESLKRKIEPEQNKFELPSK
Specific function: Contributes significantly to bacterial utilization of polygalacturonate and the induction of pectate lyase in the presence of extracellular pectic polymers [H]
COG id: COG5434
COG function: function code M; Endopolygalacturonase
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 4 PbH1 repeats [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008957 - InterPro: IPR003961 - InterPro: IPR000743 - InterPro: IPR013783 - InterPro: IPR006626 - InterPro: IPR012334 - InterPro: IPR011050 [H]
Pfam domain/function: PF00041 fn3; PF00295 Glyco_hydro_28 [H]
EC number: =3.2.1.82 [H]
Molecular weight: Translated: 56517; Mature: 56517
Theoretical pI: Translated: 8.35; Mature: 8.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKINFKIVLLIFCISLSVSAQKVFDIKKYGAVGDGKTLNTKAIQKAIDAANKSKGGKVLF CEEEEEEEEEEHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEE SKGTFLSGSIVLKSDVELFFEEGAILLGSTNPEDYPKYDGIRAFIIASDSKNIAVNGKGI ECCCEEECEEEEECCCEEEEECCEEEEECCCCCCCCCCCCEEEEEEECCCCEEEECCCEE IDGQGRELALAIDSLHHTGVRIDPKYNYRRMRPEDGRGKLISFVKCDSITMTQITLKNSP ECCCCCEEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEEECCC GWTQCFRECKNIIIDFMKVESRAYWNNDGIDLDGCENARITNCNVNAADDGICLKSEVPG CHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCC LHNNNIYIGNCTIRSSANAVKFGTGSYGSFKNVTIENIKVFDTFRSAVAIESVDGAEIEN CCCCCEEEEEEEEECCCCEEEECCCCCCCCCCEEEEEEEEEEHHHHHEEEECCCCCEECE IKVSDITAVNTGNAILIRLGHRNGEKAGYIKNVSVKNVKVQIPFGRPDIDYDMRGPEVDY EEEEEEEEEECCCEEEEEEECCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCC FHNPFPSSIAGIPGHLIENVTLENIEIIYPGKASKGMAYHPLSRLKDVKENINGYPEFTM CCCCCCCHHCCCCHHHHCCEEECCEEEEECCCCCCCCEECCHHHHHHHHHHCCCCCCEEE FGELPSWGFYVRHVHGIQMKNIKLVLDKEDFRPAFVFDDVKDLTMKTIDVPSDKINQIVF EECCCCCCEEEEEEECEEEEEEEEEEECCCCCCEEEECCHHHCEEEEEECCHHHHHHHHH KDVLSSNLDSESLKRKIEPEQNKFELPSK HHHHHCCCCHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure MKINFKIVLLIFCISLSVSAQKVFDIKKYGAVGDGKTLNTKAIQKAIDAANKSKGGKVLF CEEEEEEEEEEHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEE SKGTFLSGSIVLKSDVELFFEEGAILLGSTNPEDYPKYDGIRAFIIASDSKNIAVNGKGI ECCCEEECEEEEECCCEEEEECCEEEEECCCCCCCCCCCCEEEEEEECCCCEEEECCCEE IDGQGRELALAIDSLHHTGVRIDPKYNYRRMRPEDGRGKLISFVKCDSITMTQITLKNSP ECCCCCEEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEEECCC GWTQCFRECKNIIIDFMKVESRAYWNNDGIDLDGCENARITNCNVNAADDGICLKSEVPG CHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCC LHNNNIYIGNCTIRSSANAVKFGTGSYGSFKNVTIENIKVFDTFRSAVAIESVDGAEIEN CCCCCEEEEEEEEECCCCEEEECCCCCCCCCCEEEEEEEEEEHHHHHEEEECCCCCEECE IKVSDITAVNTGNAILIRLGHRNGEKAGYIKNVSVKNVKVQIPFGRPDIDYDMRGPEVDY EEEEEEEEEECCCEEEEEEECCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCC FHNPFPSSIAGIPGHLIENVTLENIEIIYPGKASKGMAYHPLSRLKDVKENINGYPEFTM CCCCCCCHHCCCCHHHHCCEEECCEEEEECCCCCCCCEECCHHHHHHHHHHCCCCCCEEE FGELPSWGFYVRHVHGIQMKNIKLVLDKEDFRPAFVFDDVKDLTMKTIDVPSDKINQIVF EECCCCCCEEEEEEECEEEEEEEEEEECCCCCCEEEECCHHHCEEEEEECCHHHHHHHHH KDVLSSNLDSESLKRKIEPEQNKFELPSK HHHHHCCCCHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2168372; 1409594 [H]