Click here to switch to the map view.

The map label for this gene is yebC [C]

Identifier: 146300315

GI number: 146300315

Start: 3045230

End: 3045943

Strand: Reverse

Name: yebC [C]

Synonym: Fjoh_2560

Alternate gene names: 146300315

Gene position: 3045943-3045230 (Counterclockwise)

Preceding gene: 146300316

Following gene: 146300310

Centisome position: 49.96

GC content: 35.29

Gene sequence:

>714_bases
ATGGGAAGAGCGTTCGAATTTAGAAAAGGAAGAAAAATGAAACGTTGGTCTGCAATGGCCAAAACATTTACCAGAATTGG
TAAAGACATCGTTATGGCTGTTAAAGAAGGCGGTCCTAACCCTGACGCCAATTCTAGATTAAGAGCTGTTATACAAAACG
CGAAAGCAGCCAACATGCCAAAAGACAATGTTGAGCGTGCAATAAAAAATGCAAGTAACAAAGATACTGCAAACTATAAA
GAGATTTTATTTGAAGGATATGCTCCTCATGGAATTGCTATTTTGATCGAAACTGCATCTGATAACAATAACAGAACAGT
AGCAAACATTAGAAGCTATTTTAATAAATGCAACGGTACAATGGGAACTCAGGGTTCTGTTGAATTTATGTTCGATCATA
CTTGTAATTTCAGAATTGCAAAAGATGGCATCGATGCTGAAGAATTAGAACTTGAATTAATTGATTTTGGTGCCGAAGAA
GTTTTTGAAGACGAAGATGGAATCTTGATCTACGCTCCTTTTGGAAGTTTTGGTGCTTTACAAAAAGAATTAGAAAACAG
AGGTCTTGAAATTTTATCTTCTGGTTTTGAGCGCATTCCTCAAATCACAAAAGAATTAACAGAAGCCCAAATCGCTGATG
TTGAAAAATTAATCGAAAAAATCGAAGAAGATGATGACGTTATGAACGTTTATCATACTATGAAAGAAGAATAG

Upstream 100 bases:

>100_bases
TGAGACTGCAAACCTGAAACAAATAGAAAAAACTTAAATTTTGATTTTGGATAAATAAGGAATAACCTTTATTTTTGCAA
CACAAAACTAAAAATTAGAA

Downstream 100 bases:

>100_bases
TTTTTTCTGAAAATACATTATTAAAGCTCCGGATTTTTCTGGAGCTTTTTTTGTTTTAGCACGCTTTGGCTTTTTTAAAT
CAAATAAAAAATTATATTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MGRAFEFRKGRKMKRWSAMAKTFTRIGKDIVMAVKEGGPNPDANSRLRAVIQNAKAANMPKDNVERAIKNASNKDTANYK
EILFEGYAPHGIAILIETASDNNNRTVANIRSYFNKCNGTMGTQGSVEFMFDHTCNFRIAKDGIDAEELELELIDFGAEE
VFEDEDGILIYAPFGSFGALQKELENRGLEILSSGFERIPQITKELTEAQIADVEKLIEKIEEDDDVMNVYHTMKEE

Sequences:

>Translated_237_residues
MGRAFEFRKGRKMKRWSAMAKTFTRIGKDIVMAVKEGGPNPDANSRLRAVIQNAKAANMPKDNVERAIKNASNKDTANYK
EILFEGYAPHGIAILIETASDNNNRTVANIRSYFNKCNGTMGTQGSVEFMFDHTCNFRIAKDGIDAEELELELIDFGAEE
VFEDEDGILIYAPFGSFGALQKELENRGLEILSSGFERIPQITKELTEAQIADVEKLIEKIEEDDDVMNVYHTMKEE
>Mature_236_residues
GRAFEFRKGRKMKRWSAMAKTFTRIGKDIVMAVKEGGPNPDANSRLRAVIQNAKAANMPKDNVERAIKNASNKDTANYKE
ILFEGYAPHGIAILIETASDNNNRTVANIRSYFNKCNGTMGTQGSVEFMFDHTCNFRIAKDGIDAEELELELIDFGAEEV
FEDEDGILIYAPFGSFGALQKELENRGLEILSSGFERIPQITKELTEAQIADVEKLIEKIEEDDDVMNVYHTMKEE

Specific function: Unknown

COG id: COG0217

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TACO1 family

Homologues:

Organism=Homo sapiens, GI27545315, Length=220, Percent_Identity=31.3636363636364, Blast_Score=103, Evalue=1e-22,
Organism=Escherichia coli, GI1788171, Length=224, Percent_Identity=37.9464285714286, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1788294, Length=238, Percent_Identity=34.0336134453782, Blast_Score=127, Evalue=5e-31,
Organism=Saccharomyces cerevisiae, GI6321458, Length=115, Percent_Identity=38.2608695652174, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2560_FLAJ1 (A5FGS7)

Other databases:

- EMBL:   CP000685
- RefSeq:   YP_001194906.1
- ProteinModelPortal:   A5FGS7
- SMR:   A5FGS7
- STRING:   A5FGS7
- GeneID:   5091074
- GenomeReviews:   CP000685_GR
- KEGG:   fjo:Fjoh_2560
- eggNOG:   COG0217
- HOGENOM:   HBG715231
- OMA:   QMAEVEA
- ProtClustDB:   PRK12378
- BioCyc:   FJOH376686:FJOH_2560-MONOMER
- HAMAP:   MF_00693
- InterPro:   IPR002876
- InterPro:   IPR017856
- Gene3D:   G3DSA:1.10.10.200
- PANTHER:   PTHR12532
- TIGRFAMs:   TIGR01033

Pfam domain/function: PF01709 DUF28; SSF75625 DUF28

EC number: NA

Molecular weight: Translated: 26671; Mature: 26540

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRAFEFRKGRKMKRWSAMAKTFTRIGKDIVMAVKEGGPNPDANSRLRAVIQNAKAANMP
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
KDNVERAIKNASNKDTANYKEILFEGYAPHGIAILIETASDNNNRTVANIRSYFNKCNGT
HHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCC
MGTQGSVEFMFDHTCNFRIAKDGIDAEELELELIDFGAEEVFEDEDGILIYAPFGSFGAL
CCCCCCEEEEEECCCCEEEECCCCCHHHHHHHHHHCCHHHHHCCCCCEEEEECCCCHHHH
QKELENRGLEILSSGFERIPQITKELTEAQIADVEKLIEKIEEDDDVMNVYHTMKEE
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
GRAFEFRKGRKMKRWSAMAKTFTRIGKDIVMAVKEGGPNPDANSRLRAVIQNAKAANMP
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
KDNVERAIKNASNKDTANYKEILFEGYAPHGIAILIETASDNNNRTVANIRSYFNKCNGT
HHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCC
MGTQGSVEFMFDHTCNFRIAKDGIDAEELELELIDFGAEEVFEDEDGILIYAPFGSFGAL
CCCCCCEEEEEECCCCEEEECCCCCHHHHHHHHHHCCHHHHHCCCCCEEEEECCCCHHHH
QKELENRGLEILSSGFERIPQITKELTEAQIADVEKLIEKIEEDDDVMNVYHTMKEE
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA