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The map label for this gene is dnaQ [H]

Identifier: 146300234

GI number: 146300234

Start: 2969529

End: 2970158

Strand: Reverse

Name: dnaQ [H]

Synonym: Fjoh_2479

Alternate gene names: 146300234

Gene position: 2970158-2969529 (Counterclockwise)

Preceding gene: 146300235

Following gene: 146300233

Centisome position: 48.72

GC content: 32.54

Gene sequence:

>630_bases
ATGGGATTATTCAGTTTTTGGAAAAAAGAAGAAAATCTCTTCGATGAAAGTATTACTATAGAAGAAACCAGGTTTGTGGT
TTTAGATACCGAAACTACTGGTTTTGATTATGAAAACGACCGAATTTTATGCATCGGCGCTTTGGCATTACAAAACGGCG
TAATTTCGGTTCAGGATAGTTTTGAAATATATTTACATCAGGATCATTATGATAAATCGACAGCGCAGATTCACGGAATT
TTAAAAGATCTGCTTGTTAAACGTCCAACAGAACTAGAAGCTTTACAGCAGTTTTTAGATTTTTTAGGCGATTCAATAAT
CATCGCACATCATACTGTTTTTGATGTTACTATGATTAATAAAGCTCTCGAAAGAAACGGACTGCCTCAACTCACAAATA
AAACTTTAGATACAGCTTATTTATACAAGAAAACCTTGATTCAGTCGCATTTATTTGAGCGAAAAGATCATTATACTTTA
GATGATCTGGCAGATAAATTCGATATTTCTAAAAAAGACAGACACACTGCTCTAGGAGATGCTTATATAACTGCTATTGC
TTTTCTTAAAATTGTAAAGAAATTGCGGGAGAAAAAGGCAGTTTCATTAAATCAGCTTTTTAAAAATTAA

Upstream 100 bases:

>100_bases
ACCAAAATGGAGAAAATTAAACTGAAACGCACTTTTAAAACCATTAAAGAGCTTCAGGAATTAATTTCTGTTCGTTTTAA
TATTTCAAATCTGGTATAAA

Downstream 100 bases:

>100_bases
GATATTTTTATGAAGCTTAAATTTATATTTGACTGAAAATTTTACATTTTAGTAATACAAGACTTATTATTTGTTAGCAA
TAAGAAAAAATTCACGTAAC

Product: DNA polymerase III subunit epsilon

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MGLFSFWKKEENLFDESITIEETRFVVLDTETTGFDYENDRILCIGALALQNGVISVQDSFEIYLHQDHYDKSTAQIHGI
LKDLLVKRPTELEALQQFLDFLGDSIIIAHHTVFDVTMINKALERNGLPQLTNKTLDTAYLYKKTLIQSHLFERKDHYTL
DDLADKFDISKKDRHTALGDAYITAIAFLKIVKKLREKKAVSLNQLFKN

Sequences:

>Translated_209_residues
MGLFSFWKKEENLFDESITIEETRFVVLDTETTGFDYENDRILCIGALALQNGVISVQDSFEIYLHQDHYDKSTAQIHGI
LKDLLVKRPTELEALQQFLDFLGDSIIIAHHTVFDVTMINKALERNGLPQLTNKTLDTAYLYKKTLIQSHLFERKDHYTL
DDLADKFDISKKDRHTALGDAYITAIAFLKIVKKLREKKAVSLNQLFKN
>Mature_208_residues
GLFSFWKKEENLFDESITIEETRFVVLDTETTGFDYENDRILCIGALALQNGVISVQDSFEIYLHQDHYDKSTAQIHGIL
KDLLVKRPTELEALQQFLDFLGDSIIIAHHTVFDVTMINKALERNGLPQLTNKTLDTAYLYKKTLIQSHLFERKDHYTLD
DLADKFDISKKDRHTALGDAYITAIAFLKIVKKLREKKAVSLNQLFKN

Specific function: DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease [H]

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786409, Length=181, Percent_Identity=30.3867403314917, Blast_Score=71, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006054
- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 24143; Mature: 24012

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLFSFWKKEENLFDESITIEETRFVVLDTETTGFDYENDRILCIGALALQNGVISVQDS
CCCHHHHHHHHHHCCCCEEEECEEEEEEECCCCCCCCCCCEEEEEEEEHHHCCEEEEECC
FEIYLHQDHYDKSTAQIHGILKDLLVKRPTELEALQQFLDFLGDSIIIAHHTVFDVTMIN
EEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEHHHHHHHHHHH
KALERNGLPQLTNKTLDTAYLYKKTLIQSHLFERKDHYTLDDLADKFDISKKDRHTALGD
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHH
AYITAIAFLKIVKKLREKKAVSLNQLFKN
HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GLFSFWKKEENLFDESITIEETRFVVLDTETTGFDYENDRILCIGALALQNGVISVQDS
CCHHHHHHHHHHCCCCEEEECEEEEEEECCCCCCCCCCCEEEEEEEEHHHCCEEEEECC
FEIYLHQDHYDKSTAQIHGILKDLLVKRPTELEALQQFLDFLGDSIIIAHHTVFDVTMIN
EEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEHHHHHHHHHHH
KALERNGLPQLTNKTLDTAYLYKKTLIQSHLFERKDHYTLDDLADKFDISKKDRHTALGD
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHH
AYITAIAFLKIVKKLREKKAVSLNQLFKN
HHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]