| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146300235
Identifier: 146300235
GI number: 146300235
Start: 2970160
End: 2972079
Strand: Reverse
Name: 146300235
Synonym: Fjoh_2480
Alternate gene names: NA
Gene position: 2972079-2970160 (Counterclockwise)
Preceding gene: 146300236
Following gene: 146300234
Centisome position: 48.75
GC content: 35.62
Gene sequence:
>1920_bases ATGAAAAATACCATTTCGCAAAGAGTTGCCGACTTTTTAAAAAATTATCCGCCTTTTAATTTCCTGCATCCAATGGATCT TGAAAAGCTTTCGGAACAAATTTCTATTGTTTATAAAGATAAAGACGCCGTAATTTTTGCCGAAAATGATAAAACACATG ATTCTTTTTATGTGGTACATAAAGGTGCGGTGGCACTCAAAAAAAGCACAAAAAACTCAGTTTTAGATATGTGCGACGAA GGCGATATATTTGGACTTCGCCCACTTTTGGCACAGGAAAATTACATTATGGAAGCGGTGGCGCATGAAGAAAGTATTCT TTACGCCATTCCTATTGCCGTTTTTAAACCTTACGCACTTGAAAACAGAAATGTGGGTAATTTCCTGATCGAAAGTTATG CTTCTAACACAAGAAATCCGTATTCTGACATTCATAAAGACAAATTATACGGTGATGATCTCTTAAATGAAAATCTGCAT TCCAGCAATCATTCTTTTGATTTAGCACCGATAAAATATTCAAAAAAAATAGTAACCTGCAGTCCGTCAACTACCGTTAA AGAAATTGCCAGGATAATGAATAAAAAGAAAGTCGGAGTGATTTTAATTGTAGACGAAATGCTGCCAATAGGAATTTTGA CAGATAAAGATCTCCGCAATAAAATTGTAACAGGAGATTTTCCGATTACCACAACGGCCGAAACGATAATGACAAAACCC GTTATTACGTATCCAAAAAAAATGACCGTTACAGAAGCTCAAATGGCGATGATGAAAAGCAACATCAGCCATTTATGCCT TACTAAAGATGGTACTGTTAATACCAAAGCTGTCGGGATTTTGTCGAAACACGATGTAATGGTGGCTTTAGGAAATAATC CAGCCGTTTTAATTAAAGCTTTAAAAAGAGCTAAAAAAACAAAGGAAATAAAACCTATTCGAAACCGAATCATGCAGCTG CTTCAGGGATATTTAGATCAAAATATTCCGATGACTTTAATTTCTAAAATCATAACAGAGCTCAATGAAGCTTGTACAAC TCGTGTTATTGAAATATGTTTAGAAAAAATGAGCAGTCCGCCGCCGGTAAAATTTGCGTGGCTGGCAATGGGAAGTCAGG GACGTGGTGAACAAATGCTGCATACAGATCAGGATAATGCGATTGTTTACGAAAATGTAAATGAAGTTTTTAGGGACGAA ACGAGAATTTATTTTCTGAAATTTGCCGGACTTGTTAATAAAGGTCTCTTTGAAATTGGTTACGATTATTGCCCTGCAGA TATGATGGCATCAAGTCCAAAATGGTGTATGAGTCTGGATGAATGGAAAAATCAGGTACACCACTGGATTACCAATCCGG GGAAAAATGAGGTTTTATTGTCGTTCATTTTCTTTGATTACAGCATGACATACGGCGACGCTGAAACTGTAGATCAATTA TCAGAATATATTTTTGAAACCATAAAAGCAAACCCGATTTTTTATATGCATTTAGTGAGCGGTGCTTTACAAAGCCCGTC TCCTACTGGTTTCTTCAGACAATTTTTAGTAGAGCAAGACGGTGCCAATAAAGATAATTTTGATATTAAACGAAGAGCTT TAATGCCGTTGACAGATGCTGCGCGTGTTTTGATTTTATCACATTCTGTAAAGTCAATCAGCAATACGGCAGAACGCTTT GAAAAACTGGCCGAACTAGAACCTAATAATCGTGAATTGTATTTATCATGTTCATATTCTTTTAAAGCTTTACTGAAATT CAGAACCAAACAAGGGCTTTTACATCATGATTCGGGTCAGTTTATTGAACTTGAATCTCTAACCAAAATGGAGAAAATTA AACTGAAACGCACTTTTAAAACCATTAAAGAGCTTCAGGAATTAATTTCTGTTCGTTTTAATATTTCAAATCTGGTATAA
Upstream 100 bases:
>100_bases ACCTTACAGCTCTGTATCTTTTCTCTTTACTACTAAAAAATAAACGTGTTTCTTTTACATTTCTATTTTAAATAGTACAT TAGAACTCTAATCTAACCCA
Downstream 100 bases:
>100_bases AATGGGATTATTCAGTTTTTGGAAAAAAGAAGAAAATCTCTTCGATGAAAGTATTACTATAGAAGAAACCAGGTTTGTGG TTTTAGATACCGAAACTACT
Product: CBS domain-containing protein
Products: NA
Alternate protein names: OrfX [H]
Number of amino acids: Translated: 639; Mature: 639
Protein sequence:
>639_residues MKNTISQRVADFLKNYPPFNFLHPMDLEKLSEQISIVYKDKDAVIFAENDKTHDSFYVVHKGAVALKKSTKNSVLDMCDE GDIFGLRPLLAQENYIMEAVAHEESILYAIPIAVFKPYALENRNVGNFLIESYASNTRNPYSDIHKDKLYGDDLLNENLH SSNHSFDLAPIKYSKKIVTCSPSTTVKEIARIMNKKKVGVILIVDEMLPIGILTDKDLRNKIVTGDFPITTTAETIMTKP VITYPKKMTVTEAQMAMMKSNISHLCLTKDGTVNTKAVGILSKHDVMVALGNNPAVLIKALKRAKKTKEIKPIRNRIMQL LQGYLDQNIPMTLISKIITELNEACTTRVIEICLEKMSSPPPVKFAWLAMGSQGRGEQMLHTDQDNAIVYENVNEVFRDE TRIYFLKFAGLVNKGLFEIGYDYCPADMMASSPKWCMSLDEWKNQVHHWITNPGKNEVLLSFIFFDYSMTYGDAETVDQL SEYIFETIKANPIFYMHLVSGALQSPSPTGFFRQFLVEQDGANKDNFDIKRRALMPLTDAARVLILSHSVKSISNTAERF EKLAELEPNNRELYLSCSYSFKALLKFRTKQGLLHHDSGQFIELESLTKMEKIKLKRTFKTIKELQELISVRFNISNLV
Sequences:
>Translated_639_residues MKNTISQRVADFLKNYPPFNFLHPMDLEKLSEQISIVYKDKDAVIFAENDKTHDSFYVVHKGAVALKKSTKNSVLDMCDE GDIFGLRPLLAQENYIMEAVAHEESILYAIPIAVFKPYALENRNVGNFLIESYASNTRNPYSDIHKDKLYGDDLLNENLH SSNHSFDLAPIKYSKKIVTCSPSTTVKEIARIMNKKKVGVILIVDEMLPIGILTDKDLRNKIVTGDFPITTTAETIMTKP VITYPKKMTVTEAQMAMMKSNISHLCLTKDGTVNTKAVGILSKHDVMVALGNNPAVLIKALKRAKKTKEIKPIRNRIMQL LQGYLDQNIPMTLISKIITELNEACTTRVIEICLEKMSSPPPVKFAWLAMGSQGRGEQMLHTDQDNAIVYENVNEVFRDE TRIYFLKFAGLVNKGLFEIGYDYCPADMMASSPKWCMSLDEWKNQVHHWITNPGKNEVLLSFIFFDYSMTYGDAETVDQL SEYIFETIKANPIFYMHLVSGALQSPSPTGFFRQFLVEQDGANKDNFDIKRRALMPLTDAARVLILSHSVKSISNTAERF EKLAELEPNNRELYLSCSYSFKALLKFRTKQGLLHHDSGQFIELESLTKMEKIKLKRTFKTIKELQELISVRFNISNLV >Mature_639_residues MKNTISQRVADFLKNYPPFNFLHPMDLEKLSEQISIVYKDKDAVIFAENDKTHDSFYVVHKGAVALKKSTKNSVLDMCDE GDIFGLRPLLAQENYIMEAVAHEESILYAIPIAVFKPYALENRNVGNFLIESYASNTRNPYSDIHKDKLYGDDLLNENLH SSNHSFDLAPIKYSKKIVTCSPSTTVKEIARIMNKKKVGVILIVDEMLPIGILTDKDLRNKIVTGDFPITTTAETIMTKP VITYPKKMTVTEAQMAMMKSNISHLCLTKDGTVNTKAVGILSKHDVMVALGNNPAVLIKALKRAKKTKEIKPIRNRIMQL LQGYLDQNIPMTLISKIITELNEACTTRVIEICLEKMSSPPPVKFAWLAMGSQGRGEQMLHTDQDNAIVYENVNEVFRDE TRIYFLKFAGLVNKGLFEIGYDYCPADMMASSPKWCMSLDEWKNQVHHWITNPGKNEVLLSFIFFDYSMTYGDAETVDQL SEYIFETIKANPIFYMHLVSGALQSPSPTGFFRQFLVEQDGANKDNFDIKRRALMPLTDAARVLILSHSVKSISNTAERF EKLAELEPNNRELYLSCSYSFKALLKFRTKQGLLHHDSGQFIELESLTKMEKIKLKRTFKTIKELQELISVRFNISNLV
Specific function: Unknown
COG id: COG2905
COG function: function code T; Predicted signal-transduction protein containing cAMP-binding and CBS domains
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 CBS domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR000644 [H]
Pfam domain/function: PF00571 CBS [H]
EC number: NA
Molecular weight: Translated: 72717; Mature: 72717
Theoretical pI: Translated: 8.19; Mature: 8.19
Prosite motif: PS50042 CNMP_BINDING_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNTISQRVADFLKNYPPFNFLHPMDLEKLSEQISIVYKDKDAVIFAENDKTHDSFYVVH CCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHEEEEEECCCEEEEECCCCCCCCEEEEE KGAVALKKSTKNSVLDMCDEGDIFGLRPLLAQENYIMEAVAHEESILYAIPIAVFKPYAL CCCEEEHHCCHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHCCCCEEEEEHHHHHCCHHC ENRNVGNFLIESYASNTRNPYSDIHKDKLYGDDLLNENLHSSNHSFDLAPIKYSKKIVTC CCCCCHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHCCCCCCCCCCEEEEEEEECCEEEEE SPSTTVKEIARIMNKKKVGVILIVDEMLPIGILTDKDLRNKIVTGDFPITTTAETIMTKP CCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEECCHHHHCCEEECCCCCCCCHHHHHCCC VITYPKKMTVTEAQMAMMKSNISHLCLTKDGTVNTKAVGILSKHDVMVALGNNPAVLIKA CEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCEEEEECCCHHHHHHH LKRAKKTKEIKPIRNRIMQLLQGYLDQNIPMTLISKIITELNEACTTRVIEICLEKMSSP HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PPVKFAWLAMGSQGRGEQMLHTDQDNAIVYENVNEVFRDETRIYFLKFAGLVNKGLFEIG CCCEEEEEEECCCCCCCCCEECCCCCEEEECCHHHHHCCCCEEEEEEEHHHHHCCHHHHC YDYCPADMMASSPKWCMSLDEWKNQVHHWITNPGKNEVLLSFIFFDYSMTYGDAETVDQL CCCCCHHHHCCCCHHHCCHHHHHHHHHHHCCCCCCCHHEEEEEEHHHHCCCCCHHHHHHH SEYIFETIKANPIFYMHLVSGALQSPSPTGFFRQFLVEQDGANKDNFDIKRRALMPLTDA HHHHHHHHCCCCEEEEEEHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHH ARVLILSHSVKSISNTAERFEKLAELEPNNRELYLSCSYSFKALLKFRTKQGLLHHDSGQ HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHCCCEECCCCC FIELESLTKMEKIKLKRTFKTIKELQELISVRFNISNLV EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKNTISQRVADFLKNYPPFNFLHPMDLEKLSEQISIVYKDKDAVIFAENDKTHDSFYVVH CCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHEEEEEECCCEEEEECCCCCCCCEEEEE KGAVALKKSTKNSVLDMCDEGDIFGLRPLLAQENYIMEAVAHEESILYAIPIAVFKPYAL CCCEEEHHCCHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHCCCCEEEEEHHHHHCCHHC ENRNVGNFLIESYASNTRNPYSDIHKDKLYGDDLLNENLHSSNHSFDLAPIKYSKKIVTC CCCCCHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHCCCCCCCCCCEEEEEEEECCEEEEE SPSTTVKEIARIMNKKKVGVILIVDEMLPIGILTDKDLRNKIVTGDFPITTTAETIMTKP CCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEECCHHHHCCEEECCCCCCCCHHHHHCCC VITYPKKMTVTEAQMAMMKSNISHLCLTKDGTVNTKAVGILSKHDVMVALGNNPAVLIKA CEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCEEEEECCCHHHHHHH LKRAKKTKEIKPIRNRIMQLLQGYLDQNIPMTLISKIITELNEACTTRVIEICLEKMSSP HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PPVKFAWLAMGSQGRGEQMLHTDQDNAIVYENVNEVFRDETRIYFLKFAGLVNKGLFEIG CCCEEEEEEECCCCCCCCCEECCCCCEEEECCHHHHHCCCCEEEEEEEHHHHHCCHHHHC YDYCPADMMASSPKWCMSLDEWKNQVHHWITNPGKNEVLLSFIFFDYSMTYGDAETVDQL CCCCCHHHHCCCCHHHCCHHHHHHHHHHHCCCCCCCHHEEEEEEHHHHCCCCCHHHHHHH SEYIFETIKANPIFYMHLVSGALQSPSPTGFFRQFLVEQDGANKDNFDIKRRALMPLTDA HHHHHHHHCCCCEEEEEEHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHH ARVLILSHSVKSISNTAERFEKLAELEPNNRELYLSCSYSFKALLKFRTKQGLLHHDSGQ HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHCCCEECCCCC FIELESLTKMEKIKLKRTFKTIKELQELISVRFNISNLV EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11930014; 8522533 [H]