Definition | Corynebacterium glutamicum R chromosome, complete genome. |
---|---|
Accession | NC_009342 |
Length | 3,314,179 |
Click here to switch to the map view.
The map label for this gene is yflS [H]
Identifier: 145296009
GI number: 145296009
Start: 2121689
End: 2122891
Strand: Reverse
Name: yflS [H]
Synonym: cgR_1933
Alternate gene names: 145296009
Gene position: 2122891-2121689 (Counterclockwise)
Preceding gene: 145296010
Following gene: 145296008
Centisome position: 64.05
GC content: 51.87
Gene sequence:
>1203_bases GTGGCGAATGTTTGGCCTGTTCATCGCAACGATTGTGGCGATTTTCTCAAGCCAATGCCAATGGGTGCCGTGACAATTAT CGGCATGATTACCGCGGTACTAACTGGTTTAGTGCCGTTGACTGCGCCTTCTGATGATCCCGGCGCGGTGTATGGCCTTA TTGGTTTCAGTAACGGAACCATTTGGCTGATTGTGATGGCGTTCCTGATTTCGCGTGGATTCATCAAGACCGGGCTTGGA CGTCGAATAGCGTTGTTCTTCGTGTCTAAAGTTGGCGGAAAAATGCTGGGTGTGACCTATGGTTTGGCGCTCGCGGACTT GGTCTTGGCTCCTGCGATTCCATCAGCAACTGCTCGAGGCGGCGTCATTATGGCTCCGATTATGAAGTCGGTGGCATTGA CTTATGATTCCACTCCTGGCCCAACTCGTCGCAGGGCTGGCGCGTTCTTGGCGCTGAATGTGGGACAGGTAAATGCGATT ACCTGCGCGATGTTTCTTACAGCGATGGCAGGAAACCCCTTGATCGCATCGTTGGCTTCGCAGATGGATGTCAATATCAC ATGGACAAACTGGGCTGTGGGTGCGATTGTGCCTGGTTTAGTGGCGCTTATTGTGGTGCCGTGGGTGGTGTACAAGATAT ATCCACCTGAGTTGAAGGACACCCCTGAGGTCAAGACGATGGCTTCTGATGAACTCAAGCAATTGGGTGCGTTCACTTAT GGTGAGAAGGTGCTGTCGGGAACCTTTGTTGTGTTGCTGCTGCTCTGGATCGCGGTGCTGTACATGATGGCAACAGCGTT ATCGCAGTACGGATTCATCGCGTGGATTTCTGAGGTGATTGCTTCCAGTTTGGGTGGCATGAACTGGGTCGTTGCTTTGG TTGTGTTGGTGCTGATTTACTTCTTCAGTCACTATTTCTTTGCCTCGGCAACAGCGCATATTTCTGCGATGTACTTGGCC TTCCTGGGTGCTGCGATTGCGATTGGCGCACCCCCGTTGATGGCAGCCCTGGTTCTGGCGTACACGTCTAATTTGTTCTC TTCACTCACTCAGTATTCTGGTGGTCCTTCGCCAACATTGTTCGGTTTGAACTACATCACGGTGGGTGAGTGGTGGCGGA CCTCGGCAATTGCTGGTGCCGTATCGATCACAATCTGGTTGGTTATCGGTGGTTTGTGGATGAATGTCATCGGACTCTGG TAA
Upstream 100 bases:
>100_bases GGTCCCATTGGAGCAATCTTTTAATCAAGTTGGGAATTCCAGCGTTGATCGTGGTTGCCATGTGGTTTGCCCCGCACCCT GAAGCACTCACGGATCAAGC
Downstream 100 bases:
>100_bases TCGAAGTCAAAGGCAAAAAGGTAAGGGTGTGTGAAGATGTCAGCAAAATCGAGCCTCAAGGAAGTGGCTGAGTTAGCTGG CGTCGGTTACGCCACAGCCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 400; Mature: 399
Protein sequence:
>400_residues MANVWPVHRNDCGDFLKPMPMGAVTIIGMITAVLTGLVPLTAPSDDPGAVYGLIGFSNGTIWLIVMAFLISRGFIKTGLG RRIALFFVSKVGGKMLGVTYGLALADLVLAPAIPSATARGGVIMAPIMKSVALTYDSTPGPTRRRAGAFLALNVGQVNAI TCAMFLTAMAGNPLIASLASQMDVNITWTNWAVGAIVPGLVALIVVPWVVYKIYPPELKDTPEVKTMASDELKQLGAFTY GEKVLSGTFVVLLLLWIAVLYMMATALSQYGFIAWISEVIASSLGGMNWVVALVVLVLIYFFSHYFFASATAHISAMYLA FLGAAIAIGAPPLMAALVLAYTSNLFSSLTQYSGGPSPTLFGLNYITVGEWWRTSAIAGAVSITIWLVIGGLWMNVIGLW
Sequences:
>Translated_400_residues MANVWPVHRNDCGDFLKPMPMGAVTIIGMITAVLTGLVPLTAPSDDPGAVYGLIGFSNGTIWLIVMAFLISRGFIKTGLG RRIALFFVSKVGGKMLGVTYGLALADLVLAPAIPSATARGGVIMAPIMKSVALTYDSTPGPTRRRAGAFLALNVGQVNAI TCAMFLTAMAGNPLIASLASQMDVNITWTNWAVGAIVPGLVALIVVPWVVYKIYPPELKDTPEVKTMASDELKQLGAFTY GEKVLSGTFVVLLLLWIAVLYMMATALSQYGFIAWISEVIASSLGGMNWVVALVVLVLIYFFSHYFFASATAHISAMYLA FLGAAIAIGAPPLMAALVLAYTSNLFSSLTQYSGGPSPTLFGLNYITVGEWWRTSAIAGAVSITIWLVIGGLWMNVIGLW >Mature_399_residues ANVWPVHRNDCGDFLKPMPMGAVTIIGMITAVLTGLVPLTAPSDDPGAVYGLIGFSNGTIWLIVMAFLISRGFIKTGLGR RIALFFVSKVGGKMLGVTYGLALADLVLAPAIPSATARGGVIMAPIMKSVALTYDSTPGPTRRRAGAFLALNVGQVNAIT CAMFLTAMAGNPLIASLASQMDVNITWTNWAVGAIVPGLVALIVVPWVVYKIYPPELKDTPEVKTMASDELKQLGAFTYG EKVLSGTFVVLLLLWIAVLYMMATALSQYGFIAWISEVIASSLGGMNWVVALVVLVLIYFFSHYFFASATAHISAMYLAF LGAAIAIGAPPLMAALVLAYTSNLFSSLTQYSGGPSPTLFGLNYITVGEWWRTSAIAGAVSITIWLVIGGLWMNVIGLW
Specific function: Might be a malate transporter [H]
COG id: COG0471
COG function: function code P; Di- and tricarboxylate transporters
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the SLC13A transporter (TC 2.A.47) family [H]
Homologues:
Organism=Escherichia coli, GI1786986, Length=438, Percent_Identity=33.5616438356164, Blast_Score=209, Evalue=3e-55, Organism=Escherichia coli, GI1789444, Length=441, Percent_Identity=33.1065759637188, Blast_Score=198, Evalue=5e-52, Organism=Escherichia coli, GI1786829, Length=433, Percent_Identity=30.715935334873, Blast_Score=196, Evalue=2e-51,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001898 [H]
Pfam domain/function: PF00939 Na_sulph_symp [H]
EC number: NA
Molecular weight: Translated: 42504; Mature: 42373
Theoretical pI: Translated: 9.14; Mature: 9.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANVWPVHRNDCGDFLKPMPMGAVTIIGMITAVLTGLVPLTAPSDDPGAVYGLIGFSNGT CCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCEECCCCCCCCCCEEEEEEECCCH IWLIVMAFLISRGFIKTGLGRRIALFFVSKVGGKMLGVTYGLALADLVLAPAIPSATARG HHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCC GVIMAPIMKSVALTYDSTPGPTRRRAGAFLALNVGQVNAITCAMFLTAMAGNPLIASLAS CEEHHHHHHHHHHEECCCCCCCHHHCCEEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHH QMDVNITWTNWAVGAIVPGLVALIVVPWVVYKIYPPELKDTPEVKTMASDELKQLGAFTY HCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH GEKVLSGTFVVLLLLWIAVLYMMATALSQYGFIAWISEVIASSLGGMNWVVALVVLVLIY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH FFSHYFFASATAHISAMYLAFLGAAIAIGAPPLMAALVLAYTSNLFSSLTQYSGGPSPTL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE FGLNYITVGEWWRTSAIAGAVSITIWLVIGGLWMNVIGLW EECEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure ANVWPVHRNDCGDFLKPMPMGAVTIIGMITAVLTGLVPLTAPSDDPGAVYGLIGFSNGT CCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCEECCCCCCCCCCEEEEEEECCCH IWLIVMAFLISRGFIKTGLGRRIALFFVSKVGGKMLGVTYGLALADLVLAPAIPSATARG HHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCC GVIMAPIMKSVALTYDSTPGPTRRRAGAFLALNVGQVNAITCAMFLTAMAGNPLIASLAS CEEHHHHHHHHHHEECCCCCCCHHHCCEEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHH QMDVNITWTNWAVGAIVPGLVALIVVPWVVYKIYPPELKDTPEVKTMASDELKQLGAFTY HCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH GEKVLSGTFVVLLLLWIAVLYMMATALSQYGFIAWISEVIASSLGGMNWVVALVVLVLIY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH FFSHYFFASATAHISAMYLAFLGAAIAIGAPPLMAALVLAYTSNLFSSLTQYSGGPSPTL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE FGLNYITVGEWWRTSAIAGAVSITIWLVIGGLWMNVIGLW EECEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9272861; 9384377; 12949159 [H]