Definition Corynebacterium glutamicum R chromosome, complete genome.
Accession NC_009342
Length 3,314,179

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The map label for this gene is pcaB [H]

Identifier: 145296010

GI number: 145296010

Start: 2123087

End: 2124340

Strand: Reverse

Name: pcaB [H]

Synonym: cgR_1934

Alternate gene names: 145296010

Gene position: 2124340-2123087 (Counterclockwise)

Preceding gene: 145296012

Following gene: 145296009

Centisome position: 64.1

GC content: 53.51

Gene sequence:

>1254_bases
TTGGCTTCGGAGAGAGCACTCGCAACTGCTCTAGCCCGCCATGGCGTGATTACTGAAGACGATGCTGCACAGATCAACCA
GGCGGCAGTCCTTTCCAACATTGACCGCGAGAAGCTGTGGAAAGATGCCAAAAATGTCGGCTACCCCATCCTTGGCTTGG
TAAGACAAATCGCAAGTCACCTTCCAGAAGGCCCCAACGGGCGAGTTCACTACGGCGCCACGACCCAAGACATCATGGAC
ACTGGACTGGTGTTGCAAATGACTGCCTCTTTGAACGCCCTTGATAAACAGATCGTGCGTCTGGGGAATGCACTGGCAGC
ACGGGCTGAAGAACACAAAGACACCGTGATGCCGGGACGCACCCATGCTCAGCAGGCAATTCCCACTACATTTGGAGCAA
CCCTCGCTACCTTTTTGGATCAAATCCGCAGGCAGAGGGAACGACTTGAGGAAGCACTCGAGCGCGTGCGAGTCATTTCG
CTGTTTGGTGCTGGTGGAAACAACGCAGCACAAGGCGAACAAGCGGCAACGGTTCGTGCAGAGATGGCTCGCCTGTTGGA
TCTGAAGGACCCGGTGGTGTTATGGCATGTGGAACGCGATGTGCTTGGGGACTTCGGATGGGTGTGCTCAACGCTGTGTG
GATCGATGGCAAAATTTGGCCGAAACATCGTTGATCTTTCCCGAACTGAAATCGGAGAAGTTTTTGAGCCTTACAACTCC
CATCGGGGTGCATCTTCCACGATGCCTCAGAAAGTCAACCCGATTTCTTCCGAGCTCATGATTGGTATTTCAGTGGTGGC
GGGTGCCTTGACCTCGACTTTGCCACGGCTTCAGGAATCGGGACATGAACGAGCAGCAGGAGAGTGGCAGGGAGAATGGC
TTGTCATTCCAACGTTGGCCAATCTAGCTGGCGCTGCACTCGATGAAGCCATTGTGGTGGCTGAAGGAATGCGAGTGGAT
ACAGATCGTATGTCCTCGAACTTGGCTTTTGATGGTGGATTGATCATGGCGGAAGCTCAGATGATTCAACTAGCTCCAGC
TCTGGGGCGTGAGAAAGCTCATGACTTGGTTTATGAAGCATCCACAAAGACTCGTGAAGAGCACACCACGCTGGCAGAAG
AACTGCCGATAATTGCAGTTCAACATGGGGTCGAAGACCTGTTGCCTAAGAGTTTTGCGCAGCCTGCAGACTACGTCGGC
GAAGCACAATCCATGGTGAATGCAGCTGTCGCCGCCTGGAATGCCCAACTTTAA

Upstream 100 bases:

>100_bases
GTATCCCACTGACAAAGCCCCATTCTCCTAACTTTGGCAGTACGCAGGAAATGACACTCAACTAGAAATCTTTTCTTCAG
ATGCCACAATCGAAAGCTGG

Downstream 100 bases:

>100_bases
CAACCCAAAACTTTAACAACTCGAATCGTTCAGGAGTTTACGCACGATGAGTACACCGATCAAGAACCAATCCCAAGGTG
TTAATGCACCTGCCAGGTCC

Product: hypothetical protein

Products: NA

Alternate protein names: 3-carboxymuconate lactonizing enzyme; CMLE [H]

Number of amino acids: Translated: 417; Mature: 416

Protein sequence:

>417_residues
MASERALATALARHGVITEDDAAQINQAAVLSNIDREKLWKDAKNVGYPILGLVRQIASHLPEGPNGRVHYGATTQDIMD
TGLVLQMTASLNALDKQIVRLGNALAARAEEHKDTVMPGRTHAQQAIPTTFGATLATFLDQIRRQRERLEEALERVRVIS
LFGAGGNNAAQGEQAATVRAEMARLLDLKDPVVLWHVERDVLGDFGWVCSTLCGSMAKFGRNIVDLSRTEIGEVFEPYNS
HRGASSTMPQKVNPISSELMIGISVVAGALTSTLPRLQESGHERAAGEWQGEWLVIPTLANLAGAALDEAIVVAEGMRVD
TDRMSSNLAFDGGLIMAEAQMIQLAPALGREKAHDLVYEASTKTREEHTTLAEELPIIAVQHGVEDLLPKSFAQPADYVG
EAQSMVNAAVAAWNAQL

Sequences:

>Translated_417_residues
MASERALATALARHGVITEDDAAQINQAAVLSNIDREKLWKDAKNVGYPILGLVRQIASHLPEGPNGRVHYGATTQDIMD
TGLVLQMTASLNALDKQIVRLGNALAARAEEHKDTVMPGRTHAQQAIPTTFGATLATFLDQIRRQRERLEEALERVRVIS
LFGAGGNNAAQGEQAATVRAEMARLLDLKDPVVLWHVERDVLGDFGWVCSTLCGSMAKFGRNIVDLSRTEIGEVFEPYNS
HRGASSTMPQKVNPISSELMIGISVVAGALTSTLPRLQESGHERAAGEWQGEWLVIPTLANLAGAALDEAIVVAEGMRVD
TDRMSSNLAFDGGLIMAEAQMIQLAPALGREKAHDLVYEASTKTREEHTTLAEELPIIAVQHGVEDLLPKSFAQPADYVG
EAQSMVNAAVAAWNAQL
>Mature_416_residues
ASERALATALARHGVITEDDAAQINQAAVLSNIDREKLWKDAKNVGYPILGLVRQIASHLPEGPNGRVHYGATTQDIMDT
GLVLQMTASLNALDKQIVRLGNALAARAEEHKDTVMPGRTHAQQAIPTTFGATLATFLDQIRRQRERLEEALERVRVISL
FGAGGNNAAQGEQAATVRAEMARLLDLKDPVVLWHVERDVLGDFGWVCSTLCGSMAKFGRNIVDLSRTEIGEVFEPYNSH
RGASSTMPQKVNPISSELMIGISVVAGALTSTLPRLQESGHERAAGEWQGEWLVIPTLANLAGAALDEAIVVAEGMRVDT
DRMSSNLAFDGGLIMAEAQMIQLAPALGREKAHDLVYEASTKTREEHTTLAEELPIIAVQHGVEDLLPKSFAQPADYVGE
AQSMVNAAVAAWNAQL

Specific function: Catalyzes an anti cycloisomerization [H]

COG id: COG0015

COG function: function code F; Adenylosuccinate lyase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-II fumarase/aspartase family [H]

Homologues:

Organism=Homo sapiens, GI68303547, Length=197, Percent_Identity=27.4111675126904, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI31541964, Length=197, Percent_Identity=27.4111675126904, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI68303542, Length=197, Percent_Identity=27.4111675126904, Blast_Score=67, Evalue=3e-11,
Organism=Escherichia coli, GI1790398, Length=285, Percent_Identity=27.3684210526316, Blast_Score=72, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17553882, Length=213, Percent_Identity=29.1079812206573, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24640179, Length=219, Percent_Identity=30.5936073059361, Blast_Score=82, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24640177, Length=219, Percent_Identity=30.5936073059361, Blast_Score=82, Evalue=8e-16,
Organism=Drosophila melanogaster, GI78710009, Length=360, Percent_Identity=26.3888888888889, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24662684, Length=220, Percent_Identity=28.6363636363636, Blast_Score=71, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019468
- InterPro:   IPR003031
- InterPro:   IPR000362
- InterPro:   IPR020557
- InterPro:   IPR008948
- InterPro:   IPR022761
- InterPro:   IPR012789 [H]

Pfam domain/function: PF10397 ADSL_C; PF00206 Lyase_1 [H]

EC number: =5.5.1.2 [H]

Molecular weight: Translated: 45018; Mature: 44886

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASERALATALARHGVITEDDAAQINQAAVLSNIDREKLWKDAKNVGYPILGLVRQIASH
CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHH
LPEGPNGRVHYGATTQDIMDTGLVLQMTASLNALDKQIVRLGNALAARAEEHKDTVMPGR
CCCCCCCCEEECCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
THAQQAIPTTFGATLATFLDQIRRQRERLEEALERVRVISLFGAGGNNAAQGEQAATVRA
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHH
EMARLLDLKDPVVLWHVERDVLGDFGWVCSTLCGSMAKFGRNIVDLSRTEIGEVFEPYNS
HHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHC
HRGASSTMPQKVNPISSELMIGISVVAGALTSTLPRLQESGHERAAGEWQGEWLVIPTLA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHH
NLAGAALDEAIVVAEGMRVDTDRMSSNLAFDGGLIMAEAQMIQLAPALGREKAHDLVYEA
HHHHHHHHHHHHHHCCCEECHHHHHCCCCCCCCEEEHHHHHHHHHHHHCHHHHHHHHHHC
STKTREEHTTLAEELPIIAVQHGVEDLLPKSFAQPADYVGEAQSMVNAAVAAWNAQL
CCHHHHHHHHHHHHCCCHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ASERALATALARHGVITEDDAAQINQAAVLSNIDREKLWKDAKNVGYPILGLVRQIASH
CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHH
LPEGPNGRVHYGATTQDIMDTGLVLQMTASLNALDKQIVRLGNALAARAEEHKDTVMPGR
CCCCCCCCEEECCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
THAQQAIPTTFGATLATFLDQIRRQRERLEEALERVRVISLFGAGGNNAAQGEQAATVRA
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHH
EMARLLDLKDPVVLWHVERDVLGDFGWVCSTLCGSMAKFGRNIVDLSRTEIGEVFEPYNS
HHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHC
HRGASSTMPQKVNPISSELMIGISVVAGALTSTLPRLQESGHERAAGEWQGEWLVIPTLA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHH
NLAGAALDEAIVVAEGMRVDTDRMSSNLAFDGGLIMAEAQMIQLAPALGREKAHDLVYEA
HHHHHHHHHHHHHHCCCEECHHHHHCCCCCCCCEEEHHHHHHHHHHHHCHHHHHHHHHHC
STKTREEHTTLAEELPIIAVQHGVEDLLPKSFAQPADYVGEAQSMVNAAVAAWNAQL
CCHHHHHHHHHHHHCCCHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1390752 [H]