Definition | Corynebacterium glutamicum R chromosome, complete genome. |
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Accession | NC_009342 |
Length | 3,314,179 |
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The map label for this gene is pcaB [H]
Identifier: 145296010
GI number: 145296010
Start: 2123087
End: 2124340
Strand: Reverse
Name: pcaB [H]
Synonym: cgR_1934
Alternate gene names: 145296010
Gene position: 2124340-2123087 (Counterclockwise)
Preceding gene: 145296012
Following gene: 145296009
Centisome position: 64.1
GC content: 53.51
Gene sequence:
>1254_bases TTGGCTTCGGAGAGAGCACTCGCAACTGCTCTAGCCCGCCATGGCGTGATTACTGAAGACGATGCTGCACAGATCAACCA GGCGGCAGTCCTTTCCAACATTGACCGCGAGAAGCTGTGGAAAGATGCCAAAAATGTCGGCTACCCCATCCTTGGCTTGG TAAGACAAATCGCAAGTCACCTTCCAGAAGGCCCCAACGGGCGAGTTCACTACGGCGCCACGACCCAAGACATCATGGAC ACTGGACTGGTGTTGCAAATGACTGCCTCTTTGAACGCCCTTGATAAACAGATCGTGCGTCTGGGGAATGCACTGGCAGC ACGGGCTGAAGAACACAAAGACACCGTGATGCCGGGACGCACCCATGCTCAGCAGGCAATTCCCACTACATTTGGAGCAA CCCTCGCTACCTTTTTGGATCAAATCCGCAGGCAGAGGGAACGACTTGAGGAAGCACTCGAGCGCGTGCGAGTCATTTCG CTGTTTGGTGCTGGTGGAAACAACGCAGCACAAGGCGAACAAGCGGCAACGGTTCGTGCAGAGATGGCTCGCCTGTTGGA TCTGAAGGACCCGGTGGTGTTATGGCATGTGGAACGCGATGTGCTTGGGGACTTCGGATGGGTGTGCTCAACGCTGTGTG GATCGATGGCAAAATTTGGCCGAAACATCGTTGATCTTTCCCGAACTGAAATCGGAGAAGTTTTTGAGCCTTACAACTCC CATCGGGGTGCATCTTCCACGATGCCTCAGAAAGTCAACCCGATTTCTTCCGAGCTCATGATTGGTATTTCAGTGGTGGC GGGTGCCTTGACCTCGACTTTGCCACGGCTTCAGGAATCGGGACATGAACGAGCAGCAGGAGAGTGGCAGGGAGAATGGC TTGTCATTCCAACGTTGGCCAATCTAGCTGGCGCTGCACTCGATGAAGCCATTGTGGTGGCTGAAGGAATGCGAGTGGAT ACAGATCGTATGTCCTCGAACTTGGCTTTTGATGGTGGATTGATCATGGCGGAAGCTCAGATGATTCAACTAGCTCCAGC TCTGGGGCGTGAGAAAGCTCATGACTTGGTTTATGAAGCATCCACAAAGACTCGTGAAGAGCACACCACGCTGGCAGAAG AACTGCCGATAATTGCAGTTCAACATGGGGTCGAAGACCTGTTGCCTAAGAGTTTTGCGCAGCCTGCAGACTACGTCGGC GAAGCACAATCCATGGTGAATGCAGCTGTCGCCGCCTGGAATGCCCAACTTTAA
Upstream 100 bases:
>100_bases GTATCCCACTGACAAAGCCCCATTCTCCTAACTTTGGCAGTACGCAGGAAATGACACTCAACTAGAAATCTTTTCTTCAG ATGCCACAATCGAAAGCTGG
Downstream 100 bases:
>100_bases CAACCCAAAACTTTAACAACTCGAATCGTTCAGGAGTTTACGCACGATGAGTACACCGATCAAGAACCAATCCCAAGGTG TTAATGCACCTGCCAGGTCC
Product: hypothetical protein
Products: NA
Alternate protein names: 3-carboxymuconate lactonizing enzyme; CMLE [H]
Number of amino acids: Translated: 417; Mature: 416
Protein sequence:
>417_residues MASERALATALARHGVITEDDAAQINQAAVLSNIDREKLWKDAKNVGYPILGLVRQIASHLPEGPNGRVHYGATTQDIMD TGLVLQMTASLNALDKQIVRLGNALAARAEEHKDTVMPGRTHAQQAIPTTFGATLATFLDQIRRQRERLEEALERVRVIS LFGAGGNNAAQGEQAATVRAEMARLLDLKDPVVLWHVERDVLGDFGWVCSTLCGSMAKFGRNIVDLSRTEIGEVFEPYNS HRGASSTMPQKVNPISSELMIGISVVAGALTSTLPRLQESGHERAAGEWQGEWLVIPTLANLAGAALDEAIVVAEGMRVD TDRMSSNLAFDGGLIMAEAQMIQLAPALGREKAHDLVYEASTKTREEHTTLAEELPIIAVQHGVEDLLPKSFAQPADYVG EAQSMVNAAVAAWNAQL
Sequences:
>Translated_417_residues MASERALATALARHGVITEDDAAQINQAAVLSNIDREKLWKDAKNVGYPILGLVRQIASHLPEGPNGRVHYGATTQDIMD TGLVLQMTASLNALDKQIVRLGNALAARAEEHKDTVMPGRTHAQQAIPTTFGATLATFLDQIRRQRERLEEALERVRVIS LFGAGGNNAAQGEQAATVRAEMARLLDLKDPVVLWHVERDVLGDFGWVCSTLCGSMAKFGRNIVDLSRTEIGEVFEPYNS HRGASSTMPQKVNPISSELMIGISVVAGALTSTLPRLQESGHERAAGEWQGEWLVIPTLANLAGAALDEAIVVAEGMRVD TDRMSSNLAFDGGLIMAEAQMIQLAPALGREKAHDLVYEASTKTREEHTTLAEELPIIAVQHGVEDLLPKSFAQPADYVG EAQSMVNAAVAAWNAQL >Mature_416_residues ASERALATALARHGVITEDDAAQINQAAVLSNIDREKLWKDAKNVGYPILGLVRQIASHLPEGPNGRVHYGATTQDIMDT GLVLQMTASLNALDKQIVRLGNALAARAEEHKDTVMPGRTHAQQAIPTTFGATLATFLDQIRRQRERLEEALERVRVISL FGAGGNNAAQGEQAATVRAEMARLLDLKDPVVLWHVERDVLGDFGWVCSTLCGSMAKFGRNIVDLSRTEIGEVFEPYNSH RGASSTMPQKVNPISSELMIGISVVAGALTSTLPRLQESGHERAAGEWQGEWLVIPTLANLAGAALDEAIVVAEGMRVDT DRMSSNLAFDGGLIMAEAQMIQLAPALGREKAHDLVYEASTKTREEHTTLAEELPIIAVQHGVEDLLPKSFAQPADYVGE AQSMVNAAVAAWNAQL
Specific function: Catalyzes an anti cycloisomerization [H]
COG id: COG0015
COG function: function code F; Adenylosuccinate lyase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II fumarase/aspartase family [H]
Homologues:
Organism=Homo sapiens, GI68303547, Length=197, Percent_Identity=27.4111675126904, Blast_Score=67, Evalue=3e-11, Organism=Homo sapiens, GI31541964, Length=197, Percent_Identity=27.4111675126904, Blast_Score=67, Evalue=3e-11, Organism=Homo sapiens, GI68303542, Length=197, Percent_Identity=27.4111675126904, Blast_Score=67, Evalue=3e-11, Organism=Escherichia coli, GI1790398, Length=285, Percent_Identity=27.3684210526316, Blast_Score=72, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17553882, Length=213, Percent_Identity=29.1079812206573, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24640179, Length=219, Percent_Identity=30.5936073059361, Blast_Score=82, Evalue=7e-16, Organism=Drosophila melanogaster, GI24640177, Length=219, Percent_Identity=30.5936073059361, Blast_Score=82, Evalue=8e-16, Organism=Drosophila melanogaster, GI78710009, Length=360, Percent_Identity=26.3888888888889, Blast_Score=81, Evalue=1e-15, Organism=Drosophila melanogaster, GI24662684, Length=220, Percent_Identity=28.6363636363636, Blast_Score=71, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019468 - InterPro: IPR003031 - InterPro: IPR000362 - InterPro: IPR020557 - InterPro: IPR008948 - InterPro: IPR022761 - InterPro: IPR012789 [H]
Pfam domain/function: PF10397 ADSL_C; PF00206 Lyase_1 [H]
EC number: =5.5.1.2 [H]
Molecular weight: Translated: 45018; Mature: 44886
Theoretical pI: Translated: 4.98; Mature: 4.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASERALATALARHGVITEDDAAQINQAAVLSNIDREKLWKDAKNVGYPILGLVRQIASH CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHH LPEGPNGRVHYGATTQDIMDTGLVLQMTASLNALDKQIVRLGNALAARAEEHKDTVMPGR CCCCCCCCEEECCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC THAQQAIPTTFGATLATFLDQIRRQRERLEEALERVRVISLFGAGGNNAAQGEQAATVRA HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHH EMARLLDLKDPVVLWHVERDVLGDFGWVCSTLCGSMAKFGRNIVDLSRTEIGEVFEPYNS HHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHC HRGASSTMPQKVNPISSELMIGISVVAGALTSTLPRLQESGHERAAGEWQGEWLVIPTLA CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHH NLAGAALDEAIVVAEGMRVDTDRMSSNLAFDGGLIMAEAQMIQLAPALGREKAHDLVYEA HHHHHHHHHHHHHHCCCEECHHHHHCCCCCCCCEEEHHHHHHHHHHHHCHHHHHHHHHHC STKTREEHTTLAEELPIIAVQHGVEDLLPKSFAQPADYVGEAQSMVNAAVAAWNAQL CCHHHHHHHHHHHHCCCHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure ASERALATALARHGVITEDDAAQINQAAVLSNIDREKLWKDAKNVGYPILGLVRQIASH CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHH LPEGPNGRVHYGATTQDIMDTGLVLQMTASLNALDKQIVRLGNALAARAEEHKDTVMPGR CCCCCCCCEEECCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC THAQQAIPTTFGATLATFLDQIRRQRERLEEALERVRVISLFGAGGNNAAQGEQAATVRA HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHH EMARLLDLKDPVVLWHVERDVLGDFGWVCSTLCGSMAKFGRNIVDLSRTEIGEVFEPYNS HHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHC HRGASSTMPQKVNPISSELMIGISVVAGALTSTLPRLQESGHERAAGEWQGEWLVIPTLA CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHH NLAGAALDEAIVVAEGMRVDTDRMSSNLAFDGGLIMAEAQMIQLAPALGREKAHDLVYEA HHHHHHHHHHHHHHCCCEECHHHHHCCCCCCCCEEEHHHHHHHHHHHHCHHHHHHHHHHC STKTREEHTTLAEELPIIAVQHGVEDLLPKSFAQPADYVGEAQSMVNAAVAAWNAQL CCHHHHHHHHHHHHCCCHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1390752 [H]