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The map label for this gene is nuoC [H]

Identifier: 138896931

GI number: 138896931

Start: 3409644

End: 3411188

Strand: Reverse

Name: nuoC [H]

Synonym: GTNG_3300

Alternate gene names: 138896931

Gene position: 3411188-3409644 (Counterclockwise)

Preceding gene: 138896932

Following gene: 138896930

Centisome position: 96.08

GC content: 60.97

Gene sequence:

>1545_bases
ATGGATGAGGAAAAAGATTTGGCCCAGCGCAAAAAAGAAGCAGCCGAGCGGGCGAGACAGCTAGCGCGCGAACGGCTGGC
CGCCAAGCAAGCAGCCGAACAGGCCAAGTCAGCCGCTGATCACGGCGACACGTCAACCGGAGAATTGAAAACGCCTTCTG
ACTTGTCCACCGATTCGGTAACTGAAGGATCGGATGCGGCGCAGCCGTCATCAGCGGAAGAGCTCGCTGCAGCAAAAAAG
CGGGCCGCAGAAGAAGCGCGAGCGAAAGCAGCGGAACTGCGGCGACAGCGTGAGGCGGCCGCGACCGGGGGCGCGACGGA
AGAAGACCTGGCTGCGGCGAAGAAAAAAGCGGCAGAAGAAGCGCGAGCGAAAGCGGCGGAACTGCGGCGACAGCGTGAGG
CGGCCGCGACCGGAGGCGCGACGGAAGAAGACATTGCCGCGGCGAAGAGAAAAGCGGCAGAAGAAGCACGGGCGAAAGCG
GCGGAACTGCGGCGACAGCGCGAGGCGGCCGCGACCGGAGGCGCGACGGAAGAAGACCTGGCTGCGGCGAAGAAAAAAGC
GGCAGAAGAAGCGCGAGCGAAAGCGGCGGAACTGCGGCGACAGCGTGAGGCGGCCGCGACCGGAGGCGCGACGGAAGAAG
ACCTGGCTGCGGCGAAGAAAAAAGCGGCAGAAGAAGCGCGAGCGAAAGCGGCGGAACTGCGGCGACAGCGTGAGGCCGCT
GCGGCCGGAGGCACGACGGAAGAAGACCTCGAGTTAGCGAAGAAAAAGGCGGCAGCGGCTGCCAAAGCGAAGGCAGCAGC
GCTAGCCAAACAAAAGGCGGCCGCGGCGGGAAGCGATGACGAGCTGGCGAAGAAAAAAGCTGCGGCTGCAGCGAAGGCGA
AAGCCGCTGCCGCGGCGAAAGCGCGGGCTGCCGCTATGGCAAAACAGCAAGGCGACGGTGCTGGCGATGATGATACGGCG
AAACAAAAGGCAGCCGCCGCTGCGAAGGCAAAAGCAGCAGCCGCCGCCCGCGCCAAGGCCAAAGCCGCTGGCGCTAGAGG
CGGAACGGAACAGCCGTCTTCCCCGTCGCCGAACGATCCGCTGCTGCAAAAGTATGTCCGCGTTATTGAGGAACATCTTG
GGCCGGATGTGCTCGAAGACGCCTATATCAACCGGTTGGCGAAAGACGTGCCGACGCTTGTTGTCAATAAAGAAGCGTAT
TACAAAGTGGCTGAGTTTTTAAAATACAATGAGCAACTCCGGTTTGATTATTTGTCCGAGTTGCACGGCACCGATTTTCA
GACACATATGGAAGTGTACGTCCATTTGTATTCCTATCCGAAACGGCAACCGGTGGCGCTCAAAGTGAAAATCGACCGCG
ACAACCCGGAAATCGATTCGCTCGTTCCGCTTTGGCCAGGGGCGAACTGGCCGGAATGCGAAGCGTACGATTTGCTTGGC
ATCCGATTCCGCGGCCACCCGAACTTAATCCGCATCTTCCTAGGGGAGCAATGGGTCGGGCATCCGCTGCGCAAAGATTA
CGAGCCGTATGATGCGGAGGTGTGA

Upstream 100 bases:

>100_bases
TGGCTGTCCGCCGAACCCTGCGGCACTGATTTATGGCATTCATAAATTAAAAGAAAAAATCCGTTTGGAAGCCAAAACGG
GGAAGAAGGTGTTGTAACCG

Downstream 100 bases:

>100_bases
ACGATGCTGCGCACAGAAGAAATGATCTTAAACGTCGGCCCCCAGCACCCAAGTACGCACGGGGTATTTCGCCTCATTTT
AAAAATTGACGGTGAAATCA

Product: NADH dehydrogenase subunit C

Products: NA

Alternate protein names: NADH dehydrogenase I subunit C; NDH-1 subunit C [H]

Number of amino acids: Translated: 514; Mature: 514

Protein sequence:

>514_residues
MDEEKDLAQRKKEAAERARQLARERLAAKQAAEQAKSAADHGDTSTGELKTPSDLSTDSVTEGSDAAQPSSAEELAAAKK
RAAEEARAKAAELRRQREAAATGGATEEDLAAAKKKAAEEARAKAAELRRQREAAATGGATEEDIAAAKRKAAEEARAKA
AELRRQREAAATGGATEEDLAAAKKKAAEEARAKAAELRRQREAAATGGATEEDLAAAKKKAAEEARAKAAELRRQREAA
AAGGTTEEDLELAKKKAAAAAKAKAAALAKQKAAAAGSDDELAKKKAAAAAKAKAAAAAKARAAAMAKQQGDGAGDDDTA
KQKAAAAAKAKAAAAARAKAKAAGARGGTEQPSSPSPNDPLLQKYVRVIEEHLGPDVLEDAYINRLAKDVPTLVVNKEAY
YKVAEFLKYNEQLRFDYLSELHGTDFQTHMEVYVHLYSYPKRQPVALKVKIDRDNPEIDSLVPLWPGANWPECEAYDLLG
IRFRGHPNLIRIFLGEQWVGHPLRKDYEPYDAEV

Sequences:

>Translated_514_residues
MDEEKDLAQRKKEAAERARQLARERLAAKQAAEQAKSAADHGDTSTGELKTPSDLSTDSVTEGSDAAQPSSAEELAAAKK
RAAEEARAKAAELRRQREAAATGGATEEDLAAAKKKAAEEARAKAAELRRQREAAATGGATEEDIAAAKRKAAEEARAKA
AELRRQREAAATGGATEEDLAAAKKKAAEEARAKAAELRRQREAAATGGATEEDLAAAKKKAAEEARAKAAELRRQREAA
AAGGTTEEDLELAKKKAAAAAKAKAAALAKQKAAAAGSDDELAKKKAAAAAKAKAAAAAKARAAAMAKQQGDGAGDDDTA
KQKAAAAAKAKAAAAARAKAKAAGARGGTEQPSSPSPNDPLLQKYVRVIEEHLGPDVLEDAYINRLAKDVPTLVVNKEAY
YKVAEFLKYNEQLRFDYLSELHGTDFQTHMEVYVHLYSYPKRQPVALKVKIDRDNPEIDSLVPLWPGANWPECEAYDLLG
IRFRGHPNLIRIFLGEQWVGHPLRKDYEPYDAEV
>Mature_514_residues
MDEEKDLAQRKKEAAERARQLARERLAAKQAAEQAKSAADHGDTSTGELKTPSDLSTDSVTEGSDAAQPSSAEELAAAKK
RAAEEARAKAAELRRQREAAATGGATEEDLAAAKKKAAEEARAKAAELRRQREAAATGGATEEDIAAAKRKAAEEARAKA
AELRRQREAAATGGATEEDLAAAKKKAAEEARAKAAELRRQREAAATGGATEEDLAAAKKKAAEEARAKAAELRRQREAA
AAGGTTEEDLELAKKKAAAAAKAKAAALAKQKAAAAGSDDELAKKKAAAAAKAKAAAAAKARAAAMAKQQGDGAGDDDTA
KQKAAAAAKAKAAAAARAKAKAAGARGGTEQPSSPSPNDPLLQKYVRVIEEHLGPDVLEDAYINRLAKDVPTLVVNKEAY
YKVAEFLKYNEQLRFDYLSELHGTDFQTHMEVYVHLYSYPKRQPVALKVKIDRDNPEIDSLVPLWPGANWPECEAYDLLG
IRFRGHPNLIRIFLGEQWVGHPLRKDYEPYDAEV

Specific function: NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocat

COG id: COG0852

COG function: function code C; NADH:ubiquinone oxidoreductase 27 kD subunit

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the complex I 30 kDa subunit family [H]

Homologues:

Organism=Escherichia coli, GI145693162, Length=156, Percent_Identity=36.5384615384615, Blast_Score=94, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI32563621, Length=118, Percent_Identity=37.2881355932203, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI71990788, Length=118, Percent_Identity=37.2881355932203, Blast_Score=72, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010218
- InterPro:   IPR001268
- ProDom:   PD001581 [H]

Pfam domain/function: PF00329 Complex1_30kDa [H]

EC number: =1.6.99.5 [H]

Molecular weight: Translated: 54693; Mature: 54693

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEEKDLAQRKKEAAERARQLARERLAAKQAAEQAKSAADHGDTSTGELKTPSDLSTDSV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
TEGSDAAQPSSAEELAAAKKRAAEEARAKAAELRRQREAAATGGATEEDLAAAKKKAAEE
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
ARAKAAELRRQREAAATGGATEEDIAAAKRKAAEEARAKAAELRRQREAAATGGATEEDL
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
AAAKKKAAEEARAKAAELRRQREAAATGGATEEDLAAAKKKAAEEARAKAAELRRQREAA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAGGTTEEDLELAKKKAAAAAKAKAAALAKQKAAAAGSDDELAKKKAAAAAKAKAAAAAK
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
ARAAAMAKQQGDGAGDDDTAKQKAAAAAKAKAAAAARAKAKAAGARGGTEQPSSPSPNDP
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
LLQKYVRVIEEHLGPDVLEDAYINRLAKDVPTLVVNKEAYYKVAEFLKYNEQLRFDYLSE
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHHHH
LHGTDFQTHMEVYVHLYSYPKRQPVALKVKIDRDNPEIDSLVPLWPGANWPECEAYDLLG
HCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHCCCCCCCCCCCCCCCCEEEEE
IRFRGHPNLIRIFLGEQWVGHPLRKDYEPYDAEV
EEECCCCCEEEEEECCHHHCCHHHCCCCCCCCCC
>Mature Secondary Structure
MDEEKDLAQRKKEAAERARQLARERLAAKQAAEQAKSAADHGDTSTGELKTPSDLSTDSV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
TEGSDAAQPSSAEELAAAKKRAAEEARAKAAELRRQREAAATGGATEEDLAAAKKKAAEE
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
ARAKAAELRRQREAAATGGATEEDIAAAKRKAAEEARAKAAELRRQREAAATGGATEEDL
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
AAAKKKAAEEARAKAAELRRQREAAATGGATEEDLAAAKKKAAEEARAKAAELRRQREAA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAGGTTEEDLELAKKKAAAAAKAKAAALAKQKAAAAGSDDELAKKKAAAAAKAKAAAAAK
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
ARAAAMAKQQGDGAGDDDTAKQKAAAAAKAKAAAAARAKAKAAGARGGTEQPSSPSPNDP
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
LLQKYVRVIEEHLGPDVLEDAYINRLAKDVPTLVVNKEAYYKVAEFLKYNEQLRFDYLSE
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHHHH
LHGTDFQTHMEVYVHLYSYPKRQPVALKVKIDRDNPEIDSLVPLWPGANWPECEAYDLLG
HCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHCCCCCCCCCCCCCCCCEEEEE
IRFRGHPNLIRIFLGEQWVGHPLRKDYEPYDAEV
EEECCCCCEEEEEECCHHHCCHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA