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The map label for this gene is dapF [H]

Identifier: 138896544

GI number: 138896544

Start: 3013640

End: 3014512

Strand: Reverse

Name: dapF [H]

Synonym: GTNG_2907

Alternate gene names: 138896544

Gene position: 3014512-3013640 (Counterclockwise)

Preceding gene: 138896545

Following gene: 138896543

Centisome position: 84.91

GC content: 56.13

Gene sequence:

>873_bases
GTGTACTCGTTTTTGTTTACGAAAATGCATGGGTTGGGGAATAGTTATATATACGTCGATCTGTTCCGTGAAACGCTTCC
GGAAGAAGACCTGCCGGCGATCGCCCGCTCTGTGGCCGATGTCCACACCGGCATCGGTTCCGATGGCCTCATTCTCATTT
GCCCATCGGAGCAAGCGCCAGTGAAAATGCGCATTTTTAACAGCGATGGCTCGGAAGGAAAGAACTGTGGCAACGGCTTG
CGCTGTGTGGCGAAATACGCCTACGAGCATGGCATCGTCCGTGACCGCTCGTTTTTAATCGAAACGCTTTCCGGGCTCGT
CGAGGCTGAAGTGACCGTGGAAAACGGCGAGGTGACGAGCGTGACGATCGATATGGGCGAGCCGCGCCTTCGGCGGAGCG
CCATTCCAATGACCGGACCGGAAGCGGAGCAAGTCGTTGCCGAGTCGTTTGCGATTGACGGTCGTGAGTATGAAATTACG
GCTGTATCGATGGGCAACCCGCACGTCATTTTTTATGTGGATGATATTGAAAAGGCACCAGTGACTACACTCGGCCCAGT
CGTCGAAAAGGATGCCCGTTTTCCAGAAGGGGTGAACGTCGAATTTGTCGAAGTAGTCAGTGAGCGAGAGCTTCACTTTC
GCGTTTGGGAGCGCGGCTCAGGCGTCACGCAGGCGTGCGGCACCGGGGCATGTGCGGCGGTTGTTGCTTCTGTGTTAAAC
GGCAAAACGGCGCGTGGGGTGGAAACGGTCGTTCACTTAGCTGGCGGGGATTTGACGATCACCTGGGGACACGACGGAAA
AGTGCGCATGACCGGCCCAGCCGAAACGGTGTGCACCGGTGTGTATTATTACCGAGGCGGGCAGAACGGTTGA

Upstream 100 bases:

>100_bases
CCTCTTCAATGTATATGAAAAAACGGGGGATATTCCCATTTTGTCCAAGGGGCGGTATTGTTATACATAAGAAAGTGAAA
ATCATGAGGAGGGGCATACC

Downstream 100 bases:

>100_bases
GCATCCGAAAGACAAAACGATATACTATAAGTAAGGAGGGATCGGTATGACCGAAGCGATCATTACGCTGACGGAAGCGG
CAGCGTTTCAAATTAAAGAC

Product: diaminopimelate epimerase

Products: NA

Alternate protein names: DAP epimerase [H]

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MYSFLFTKMHGLGNSYIYVDLFRETLPEEDLPAIARSVADVHTGIGSDGLILICPSEQAPVKMRIFNSDGSEGKNCGNGL
RCVAKYAYEHGIVRDRSFLIETLSGLVEAEVTVENGEVTSVTIDMGEPRLRRSAIPMTGPEAEQVVAESFAIDGREYEIT
AVSMGNPHVIFYVDDIEKAPVTTLGPVVEKDARFPEGVNVEFVEVVSERELHFRVWERGSGVTQACGTGACAAVVASVLN
GKTARGVETVVHLAGGDLTITWGHDGKVRMTGPAETVCTGVYYYRGGQNG

Sequences:

>Translated_290_residues
MYSFLFTKMHGLGNSYIYVDLFRETLPEEDLPAIARSVADVHTGIGSDGLILICPSEQAPVKMRIFNSDGSEGKNCGNGL
RCVAKYAYEHGIVRDRSFLIETLSGLVEAEVTVENGEVTSVTIDMGEPRLRRSAIPMTGPEAEQVVAESFAIDGREYEIT
AVSMGNPHVIFYVDDIEKAPVTTLGPVVEKDARFPEGVNVEFVEVVSERELHFRVWERGSGVTQACGTGACAAVVASVLN
GKTARGVETVVHLAGGDLTITWGHDGKVRMTGPAETVCTGVYYYRGGQNG
>Mature_290_residues
MYSFLFTKMHGLGNSYIYVDLFRETLPEEDLPAIARSVADVHTGIGSDGLILICPSEQAPVKMRIFNSDGSEGKNCGNGL
RCVAKYAYEHGIVRDRSFLIETLSGLVEAEVTVENGEVTSVTIDMGEPRLRRSAIPMTGPEAEQVVAESFAIDGREYEIT
AVSMGNPHVIFYVDDIEKAPVTTLGPVVEKDARFPEGVNVEFVEVVSERELHFRVWERGSGVTQACGTGACAAVVASVLN
GKTARGVETVVHLAGGDLTITWGHDGKVRMTGPAETVCTGVYYYRGGQNG

Specific function: Biosynthesis of lysine from aspartate semialdehyde; sixth step. [C]

COG id: COG0253

COG function: function code E; Diaminopimelate epimerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the diaminopimelate epimerase family [H]

Homologues:

Organism=Escherichia coli, GI87082334, Length=283, Percent_Identity=40.2826855123675, Blast_Score=194, Evalue=8e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001653
- InterPro:   IPR018510 [H]

Pfam domain/function: PF01678 DAP_epimerase [H]

EC number: =5.1.1.7 [H]

Molecular weight: Translated: 31312; Mature: 31312

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: PS01326 DAP_EPIMERASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYSFLFTKMHGLGNSYIYVDLFRETLPEEDLPAIARSVADVHTGIGSDGLILICPSEQAP
CCHHHEEHHHCCCCCEEEEEEHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCC
VKMRIFNSDGSEGKNCGNGLRCVAKYAYEHGIVRDRSFLIETLSGLVEAEVTVENGEVTS
EEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEEEEEEECCEEEE
VTIDMGEPRLRRSAIPMTGPEAEQVVAESFAIDGREYEITAVSMGNPHVIFYVDDIEKAP
EEEECCCCHHHHCCCCCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCEEEEEECCCCCCC
VTTLGPVVEKDARFPEGVNVEFVEVVSERELHFRVWERGSGVTQACGTGACAAVVASVLN
CCHHCHHHHHCCCCCCCCCEEEEEEHHCCCEEEEEEECCCCCHHHCCCCHHHHHHHHHHC
GKTARGVETVVHLAGGDLTITWGHDGKVRMTGPAETVCTGVYYYRGGQNG
CCCCCCHHHEEEECCCCEEEEECCCCEEEECCCHHHHHEEEEEEECCCCC
>Mature Secondary Structure
MYSFLFTKMHGLGNSYIYVDLFRETLPEEDLPAIARSVADVHTGIGSDGLILICPSEQAP
CCHHHEEHHHCCCCCEEEEEEHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCC
VKMRIFNSDGSEGKNCGNGLRCVAKYAYEHGIVRDRSFLIETLSGLVEAEVTVENGEVTS
EEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEEEEEEECCEEEE
VTIDMGEPRLRRSAIPMTGPEAEQVVAESFAIDGREYEITAVSMGNPHVIFYVDDIEKAP
EEEECCCCHHHHCCCCCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCEEEEEECCCCCCC
VTTLGPVVEKDARFPEGVNVEFVEVVSERELHFRVWERGSGVTQACGTGACAAVVASVLN
CCHHCHHHHHCCCCCCCCCEEEEEEHHCCCEEEEEEECCCCCHHHCCCCHHHHHHHHHHC
GKTARGVETVVHLAGGDLTITWGHDGKVRMTGPAETVCTGVYYYRGGQNG
CCCCCCHHHEEEECCCCEEEEECCCCEEEECCCHHHHHEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA