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The map label for this gene is araC [C]

Identifier: 138895437

GI number: 138895437

Start: 1886620

End: 1887411

Strand: Reverse

Name: araC [C]

Synonym: GTNG_1781

Alternate gene names: 138895437

Gene position: 1887411-1886620 (Counterclockwise)

Preceding gene: 138895438

Following gene: 138895436

Centisome position: 53.16

GC content: 38.76

Gene sequence:

>792_bases
ATGTACGATAAGACGATCTTAGTCGTAGATGATGAACCAAGAGCGAGAGAGGGGATTAAAAGGGCGTTGGAAAAGTGGGC
CTCTGGCAAACATAGAATTATGACAGCCTCCAATGGGAAGGAGGCATTAACGATTTTACAACAAGAAAAGGTACATGTAT
TATTGACGGATATTCGAATGCCAGAGATCACGGGTCTTGAAGTGTTGGAAAGGATGAATGAAGAAGAAGTTTCTCCCGTT
GTGATTATCATCTCCGCCTATCCTGATTTTGATTATGCGCAAAAAGCCATCGGCCTTGGTGTATTGAATTATTTATTGAA
GCCCATTAAAAAAAGTGAGTTGATCGATGCGATTGAAAAAGCCATACATGTTTCTAATAAGAAAGAGAGAGAAAGGGTCA
TCGAAAAAGTGATTGATGATAAATTGATAAACGCTTTTGATCAAAGTAGCCAAACACGTGAGCCAGTCCGGGAAGCCATT
CAGTTTATTGATCACCATCTAAAGCAGGACTTATCGTTAAAAGATGTAGCAGAACATGTCCATTTGAACCCAAGTTATTT
TAGCACGCTGTTTAAAGAACAAATGAAACTGACATTTAGTGAATATCTTACAAGAAGGAGAATGCAGCGAGCGAAAGAAT
TGTTGATTACGACAAGAATGACTGTGTCGGAAATTGCTGAAGAATGCGGATACAAAACAACTAAATACTTCATTCGGTTA
TTTAAAGAAATGGAAGGAGAGACGCCGAATAGCTACCGAAAACGGCAAAATAAAGGGGTTTCAATTATCTGA

Upstream 100 bases:

>100_bases
ACTATAATGAGGAAATAAGTGATAGTATAACAATTTGCAGCCATAAAAACAAAGGAACGAAGATAACGCTGAAAATTCCT
GTTAACGGAGGTGAAACGTA

Downstream 100 bases:

>100_bases
AAATAATGGTACTTTCCCTAATCGTTGTTACCTTTTTTGCCTCCTGTTGCAATGGTACACTGTATTCGTAAGCAAGTTTA
TTAATTTTAAATAACAAAAA

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MYDKTILVVDDEPRAREGIKRALEKWASGKHRIMTASNGKEALTILQQEKVHVLLTDIRMPEITGLEVLERMNEEEVSPV
VIIISAYPDFDYAQKAIGLGVLNYLLKPIKKSELIDAIEKAIHVSNKKERERVIEKVIDDKLINAFDQSSQTREPVREAI
QFIDHHLKQDLSLKDVAEHVHLNPSYFSTLFKEQMKLTFSEYLTRRRMQRAKELLITTRMTVSEIAEECGYKTTKYFIRL
FKEMEGETPNSYRKRQNKGVSII

Sequences:

>Translated_263_residues
MYDKTILVVDDEPRAREGIKRALEKWASGKHRIMTASNGKEALTILQQEKVHVLLTDIRMPEITGLEVLERMNEEEVSPV
VIIISAYPDFDYAQKAIGLGVLNYLLKPIKKSELIDAIEKAIHVSNKKERERVIEKVIDDKLINAFDQSSQTREPVREAI
QFIDHHLKQDLSLKDVAEHVHLNPSYFSTLFKEQMKLTFSEYLTRRRMQRAKELLITTRMTVSEIAEECGYKTTKYFIRL
FKEMEGETPNSYRKRQNKGVSII
>Mature_263_residues
MYDKTILVVDDEPRAREGIKRALEKWASGKHRIMTASNGKEALTILQQEKVHVLLTDIRMPEITGLEVLERMNEEEVSPV
VIIISAYPDFDYAQKAIGLGVLNYLLKPIKKSELIDAIEKAIHVSNKKERERVIEKVIDDKLINAFDQSSQTREPVREAI
QFIDHHLKQDLSLKDVAEHVHLNPSYFSTLFKEQMKLTFSEYLTRRRMQRAKELLITTRMTVSEIAEECGYKTTKYFIRL
FKEMEGETPNSYRKRQNKGVSII

Specific function: Probable member of the two-component regulatory system SAB0162c/SAB0161c [H]

COG id: COG4753

COG function: function code T; Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=99, Percent_Identity=37.3737373737374, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1790391, Length=109, Percent_Identity=33.0275229357798, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790299, Length=135, Percent_Identity=33.3333333333333, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1788550, Length=133, Percent_Identity=30.8270676691729, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790559, Length=99, Percent_Identity=34.3434343434343, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788905, Length=133, Percent_Identity=30.8270676691729, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1788725, Length=158, Percent_Identity=24.0506329113924, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1789993, Length=122, Percent_Identity=29.5081967213115, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1789933, Length=120, Percent_Identity=27.5, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI87082052, Length=109, Percent_Identity=34.8623853211009, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790437, Length=117, Percent_Identity=29.9145299145299, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00165 HTH_AraC; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 30581; Mature: 30581

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYDKTILVVDDEPRAREGIKRALEKWASGKHRIMTASNGKEALTILQQEKVHVLLTDIRM
CCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHEECCCC
PEITGLEVLERMNEEEVSPVVIIISAYPDFDYAQKAIGLGVLNYLLKPIKKSELIDAIEK
CCCHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIHVSNKKERERVIEKVIDDKLINAFDQSSQTREPVREAIQFIDHHLKQDLSLKDVAEHV
HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
HLNPSYFSTLFKEQMKLTFSEYLTRRRMQRAKELLITTRMTVSEIAEECGYKTTKYFIRL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
FKEMEGETPNSYRKRQNKGVSII
HHHHCCCCCHHHHHHHCCCCCCC
>Mature Secondary Structure
MYDKTILVVDDEPRAREGIKRALEKWASGKHRIMTASNGKEALTILQQEKVHVLLTDIRM
CCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHEECCCC
PEITGLEVLERMNEEEVSPVVIIISAYPDFDYAQKAIGLGVLNYLLKPIKKSELIDAIEK
CCCHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIHVSNKKERERVIEKVIDDKLINAFDQSSQTREPVREAIQFIDHHLKQDLSLKDVAEHV
HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
HLNPSYFSTLFKEQMKLTFSEYLTRRRMQRAKELLITTRMTVSEIAEECGYKTTKYFIRL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
FKEMEGETPNSYRKRQNKGVSII
HHHHCCCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA